Task

Task #2582 - 237.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	5 years ago	5 years ago	5 years ago	3 minutes (186sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TGGAAAGA	10.4	0.368585	1097.43
GGAAAGAN	11.22	1.46624	591.547
CTTTCCAN	11.22	1.46624	591.547
GAAAGANN	14.95	5.73774	243.859
TTTCCANN	14.9	5.73774	241.375
AAAGANNN	29.85	21.057	94.2326
TTCCANNN	28.67	21.057	72.1754
AAGABHDN	37.06	32.9098	17.919
TCCADNWN	33.25	29.8653	13.7096
ASAGMRKV	18.69	16.2481	11.1488
DMCMCTBD	35.57	32.9098	8.94878
AAGANNCN	23.5	21.057	8.7457
MYNCTGTN	23.35	21.057	8.72156
VAGBRKTB	35.5	32.9098	8.59393
CWSYBTRG	18.29	16.2481	8.42877
KWGDANGS	32.32	29.8653	8.22276
ARAHSNMT	32.29	29.8653	8.07421
KDTKRWMG	32.28	29.8653	8.02509

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]