Task

Task #2663 - 95.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	4 years ago	4 years ago	4 years ago	8 minutes (528sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
ACRTWCNG	62.32	5.73774	4957.2
CRTWCNGN	68.25	21.057	2231.65
NACRTWCN	67.86	21.057	2196.46
GWAYGTNN	67.52	21.057	2166.02
RTWCHGVV	50.16	32.9098	276.557
WAYGTSVN	45.49	29.8653	236.774
RTWCGGNN	33.04	21.057	169.727
WATGTWNN	31.72	21.057	136.182
RTWCHGTN	25.62	16.2481	125.4
TWCVGVSH	42.03	32.9098	80.7408
ABCDGWAY	18.87	12.451	74.4292
ATGTHNHV	41.1	32.9098	65.7308
WAYGTSTN	16.73	11.1475	62.287
TWCNGNBG	37.41	29.8653	58.6622
TWCNGTBH	29.05	23.3573	39.4155
TWCNGSWH	35.77	29.8653	37.0188
AYGTNDGN	35.72	29.8653	36.4383
WACGTWDK	11.94	8.48244	31.9125
ADNNACRT	34.67	29.8653	25.3444
AYGTGNHV	27.68	23.3573	23.8362
WACGTWWM	7.94	5.73774	19.3315
TWCTGVSH	15.32	12.451	17.3848
ACANNACG	7.8	5.73774	17.2677
ACANNTAC	7.76	5.73774	16.6996
ACGTWHYM	10.85	8.48244	16.4079
ACGKCBMV	14.97	12.451	13.9286
ACGNNATG	7.45	5.73774	12.63
ACGNNACG	7.44	5.73774	12.5086
AYGTSCGD	5.81	4.3348	12.105
ACANNATG	7.4	5.73774	12.0296
GKVKNACR	32.99	29.8653	12.0042
TWCRGWAR	7.32	5.73774	11.102
TGANNTTC	7.29	5.73774	10.7647
TWCVGATH	8.02	6.4315	10.3157
AGANNTAC	7.17	5.73774	9.47354
CANNNACG	23.45	21.057	9.31125
TWCYGWAR	7.13	5.73774	9.06394
TGTHHYVR	35.43	32.9098	8.24837
RNTVSACR	32.28	29.8653	8.02509

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]