Task

Task #2530 - 190.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	5 years ago	5 years ago	5 years ago	3 minutes (215sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
CAGAAGAG	30.28	0.368585	4718.59
AGAAGAGN	30.86	1.46624	3021.66
TCTTCTGN	30.62	1.46624	2986.27
CTTCTGNN	33.6	5.73774	1570.8
GAAGAGNN	33.54	5.73774	1565.23
TTCTGNNN	44.71	21.057	608.824
AAGAGNNN	43.99	21.057	574.592
AGAGDHND	42.21	32.9098	83.8244
TCTGHNDH	42.09	32.9098	81.7623
TCTGNNCN	26.52	21.057	38.8644
AGAGCNNN	26.02	21.057	31.9611
TCTGGNDN	20.33	16.2481	27.0031
AGAGDNNC	19.47	16.2481	17.7612
TCTGHNDG	15.22	12.451	16.3551
GAGYSBHM	26.68	23.3573	14.2458
AGAGKGND	10.63	8.48244	13.9109
CTGVDWYD	36.34	32.9098	12.6188
RDSNMCAG	32.84	29.8653	11.0807
AGBVVAMM	35.45	32.9098	8.34615

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]