Task

Task #2531 - 191.fst, group: 240b8c1_c95d1eab

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	5 years ago	5 years ago	5 years ago	5 minutes (338sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
CAGAAGAG	60.14	0.368585	11723.0
TCTTCTGN	60.08	1.46624	8123.69
AGAAGAGN	60.0	1.46624	8107.66
CTTCTGNN	61.46	5.73774	4834.56
GAAGAGNN	61.2	5.73774	4797.73
TTCTGNNN	67.3	21.057	2146.45
AAGAGNNN	67.17	21.057	2134.93
AGAGVHNV	50.56	32.9098	289.187
TCTGDNDV	49.78	32.9098	265.112
AGAGTNNN	32.9	21.057	166.006
TCTGNNCN	31.39	21.057	128.338
AGAGVNNT	24.4	16.2481	96.6907
AHNNCAGA	24.27	16.2481	93.836
TCTGCNDV	18.5	12.451	66.7164
AGAGVGNV	17.86	12.451	54.3097
GAGHRDYH	38.07	32.9098	26.9592
GAGHHHAN	37.43	32.9098	21.7542
CTGRHDVS	37.39	32.9098	21.4108
GAGWYVBB	37.41	32.9098	20.84
WHBHMCAG	36.76	32.9098	16.3953
GAGGDDNH	36.73	32.9098	16.1749
CTGCNHHV	36.16	32.9098	12.3078
GAGNRCBR	18.66	16.2481	10.9289
TCNNNAAG	23.5	21.057	9.61518
AYNNKCAG	23.42	21.057	9.1318
GAGHRKGN	18.36	16.2481	8.87144
CTGTHNVS	25.72	23.3573	8.66117
GCNNNAAG	23.3	21.057	8.43581

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]