Task #3659 - 02f7e40c Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 8 minutes (526sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TTRNGHAA 68.64 22.6872 1028.08 TDCNYAAY 60.34 26.2104 550.263 TRNGMAAY 53.36 26.8118 333.478 TTDCRWCA 28.84 10.7293 261.208 TKCDWCAY 32.06 15.948 164.449 GRMCTYBG 26.66 12.6041 146.714 RYGCAAYN 32.52 17.2562 140.946 TGDMCTYK 36.06 20.5669 130.679 GWYGHAAY 24.72 12.0365 124.018 RAGKYCAN 42.08 26.3638 117.549 GCWYAAYN 31.42 17.537 115.561 GGDCRNVG 34.36 20.4878 104.737 AGKTCANN 39.24 25.527 90.062 TRTYKAYH 37.38 23.9496 89.3331 YGMAATMN 33.98 21.0837 88.5624 TTTDGHAA 25.86 14.5877 85.8225 DMCTTYGD 30.22 18.7791 74.3195 ATYGATYN 14.26 6.51822 73.6126 DHCRAAGK 30.02 19.0388 67.5143 TDCVHAAG 29.18 18.5507 64.1215 TTKRTYTW 25.34 15.3894 63.7191 GGVDGNGG 26.22 16.1671 62.8044 WTRTYKAY 25.2 15.4169 61.3805 TDKGTAAY 15.74 8.258 56.9222 GCRAYVBY 40.32 29.1272 54.07 TTGCYTCA 8.72 3.58599 51.8717 GRGGHRGR 21.18 12.8967 49.2312 AAAMARAA 14.44 7.70053 48.3626 GTTTRYWY 22.7 14.2505 47.466 CBTGGCHB 28.74 19.6958 43.0274 GWHCRARG 16.68 9.71456 42.6165 KYGWAAYB 30.26 21.3743 38.8926 DCSSYGSS 20.9 13.3844 38.4219 AMTRTYKA 16.68 10.0592 36.8892 RRVGRCRG 28.48 20.0802 35.727 TDCHAAAY 25.84 17.8017 35.4246 TRTTYGYW 20.32 13.2572 33.5417 KRDGMAMG 35.5 26.6963 32.5549 TGWMCTHM 22.56 15.3466 31.0191 DCTCNGYS 29.52 21.5354 29.9506 CBCNSCCK 19.04 12.4894 29.5829 DAKCRATS 17.44 11.1817 29.3644 KRNCTYAG 26.76 19.2453 28.239 CVGYGDBK 33.7 25.5439 27.7736 TCYGTCBY 9.66 5.2291 26.8104 RDCTCNGY 32.34 24.4274 26.5807 CDBGGTBR 26.1 18.8708 26.0589 ATTBCWAA 13.22 8.05348 25.3025 DGCCAAGN 17.98 11.9765 24.8293 AGTMYANR 21.68 15.1799 24.2022 CDGCCYBG 15.6 10.1028 23.5243 GRTGRBGM 14.1 8.91112 23.0844 GGSRNGMG 14.52 9.27198 22.8121 ATCRATAS 3.36 1.15375 22.5407 AWAMAAAK 15.3 9.95269 22.2548 TTKTTTTM 10.44 6.09789 21.7987 GYHCTYBG 25.2 18.5381 21.4156 GRRTTRDG 18.66 12.9098 20.6066 RRCNCYGR 35.6 28.1539 20.3833 ACRAABAH 17.06 11.6068 19.9697 GAADYCRN 28.06 21.2844 19.771 RBGMAMGM 26.14 19.5766 19.5558 AAAKHMAA 22.98 16.8291 18.9218 GYAMDCAS 25.3 18.913 18.7396 AGMCDKNG 31.7 24.9138 17.2963 AAWVRTTA 12.58 8.16698 16.471 GGKMRVTG 19.62 14.158 16.2085 STCVSYGB 27.2 20.9982 15.5574 WGGGSASR 17.92 12.7622 15.4049 DMATTSCR 20.72 15.2271 15.2087 AWVRTTAA 10.92 6.93956 14.8738 GWGGGHGG 5.72 2.96648 14.5234 DRRTRTYG 29.82 23.6102 13.9303 GAAGCRAY 5.08 2.54987 13.7054 WCHABGYC 20.84 15.5063 13.6302 CWMYGYTB 35.56 29.021 13.603 TYGCAATM 7.4 4.27007 13.4191 TGCCCTBK 10.96 7.13385 12.7598 RSDKGGTG 17.42 12.6077 12.655 WWTRTTYG 16.8 12.07 12.65 CVCYGKRB 30.98 24.8648 12.6192 TAKYTMRY 16.38 11.7146 12.5734 RGAADHCR 26.66 20.8825 12.5683 DAGKACAH 15.46 10.9658 12.139 ASSSMGGM 15.32 10.8538 12.0563 CCADCYCB 15.12 10.693 11.9471 AGATAARN 8.54 5.27747 11.5418 TRDCTHYG 23.14 17.8137 11.5342 GCDWCAYR 16.28 11.7791 11.11 CTRSGRWB 22.98 17.7345 11.0162 ACTMNGNW 33.08 27.0785 10.9081 RGAKGRMG 12.44 8.52335 10.8364 AACWRAAM 15.54 11.2783 9.77485 TTAAAAAW 4.22 2.12253 9.77332 YRGGTCAN 16.34 12.0044 9.50916 TTTAAAAA 3.04 1.3491 9.05891 TDRTYTTG 16.34 12.0566 9.04324 TCHYAAYY 20.62 15.872 8.93375 TYKATYGM 10.98 7.47442 8.91192 RTGGBGMR 12.98 9.16829 8.86201 RGSAWVGG 18.32 13.8658 8.52409 AATTCYAN 7.44 4.62397 8.46413 TCCHKCCC 6.98 4.27032 8.33442 TCRGYGRY 7.24 4.48447 8.20038 ACDTRGWM 12.98 9.24082 8.14277 RVCTYRGR 31.2 25.7473 8.07632 AYRCRCAC 5.78 3.36516 7.96396 YYTATCTS 7.56 4.76102 7.89002 YGTAAYYN 17.24 13.0051 7.71812 TBATCTBY 18.7 14.3328 7.50041 CBHAGCAB 17.84 13.5853 7.33842 WACCWTKR 13.64 9.91016 7.18698 GGTGRBRG 8.5 5.58135 7.10209 AWRAAAWC 11.9 8.42527 7.08415 WTCTVTCY 14.1 10.3299 7.00199 CRKCTCHG 10.02 6.86514 6.79177 GCRDAGGB 11.98 8.53872 6.64244 SCMSGARS 15.38 11.5042 6.53662 TCTGYTTV 12.12 8.6773 6.46323 TGAMCYGW 8.16 5.36223 6.39245 TKAGTHAY 10.48 7.29896 6.29068 WKCSTGSC 13.94 10.2796 6.21467 WMCVCMGH 31.2 26.0593 6.18363 AAVCAAGM 10.28 7.14474 6.14099 ADHTACYA 10.94 7.7064 6.10791 KMACTRDR 34.06 28.8076 5.98928 AGCRGHGV 11.74 8.42179 5.79294 TCVVTTCY 13.06 9.58644 5.57089 KCVTAMGH 9.82 6.84737 5.20699 CCDGCCTK 8.22 5.5177 5.14336 TWTACNHA 13.4 9.93977 5.07815 GGGTCAVD 9.38 6.49108 5.06175 GRSCBGNG 19.46 15.3484 5.0592 ARYKAWYG 15.52 11.8257 4.93794 AYYCHASG 12.58 9.26256 4.75128 AGRMCDTK 21.36 17.1294 4.7342 CGCAASVS 3.78 2.05904 4.61667 ATTWAYTY 9.02 6.23644 4.56411 AATTGATY 2.9 1.43305 4.55413 RCNKHGTG 28.28 23.5901 4.54005 ATGMGGMA 4.02 2.24804 4.40309 AGRACRAA 5.32 3.26255 4.08684 AAVABGAA 12.44 9.22544 4.02319 KAGAYGRB 10.02 7.15617 3.83383 RACATTYB 15.48 11.9411 3.78835 STAWVTAS 9.04 6.33712 3.70391 AAWKMGAA 7.82 5.32156 3.63543 ATRWTTGM 11.26 8.27583 3.36094 TTRCYACA 7.1 4.76383 3.21506 TGGKGVWR 21.36 17.3721 3.19352 AARAAYVA 16.12 12.6236 3.00614 GKCMRYMG 16.16 12.6606 2.99918 TGCTYAAG 3.14 1.68273 2.88704 TWCNTABC 9.12 6.48996 2.87079 CACVCACR 6.46 4.27785 2.76384 ACCWDGAM 11.32 8.40702 2.68844 CHYAACYD 25.12 20.9552 2.67669 GSWATVBG 16.9 13.4181 2.39543 CGSNGCGK 1.06 0.338309 2.36382 GRRCCTKG 9.54 6.90575 2.34364 TARAAWTS 8.3 5.85303 2.29952 VASTCACB 13.32 10.2261 2.2328 ASMCRMAG 15.76 12.4156 2.20312 WCAMAAYR 21.04 17.2702 2.03492 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete