Task #3646 - a36b1d4f Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 14 minutes (846sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) RCSAATSR 54.18 11.7987 1134.25 ATTSGHYV 62.52 17.9047 1051.91 RRCSAATV 59.24 15.873 1045.25 CSAATSRV 60.9 18.8879 921.079 DRGGYGGG 54.94 20.9371 593.205 RGGYGGGR 45.84 15.4225 552.547 GGYGGGRC 30.38 7.34678 496.781 RKRGGCGG 40.9 15.013 416.304 TNYGAWTG 25.98 6.47043 400.579 AATBARMR 32.2 11.438 322.775 TTGGHTRN 40.06 17.3499 302.124 GCGGGRCB 25.22 9.76586 206.838 DRKGGGCG 33.16 15.8749 188.875 ATTWRCAT 6.2 0.636634 181.254 RGGYSGAG 22.84 9.69383 153.722 RKGSGTGG 21.58 9.13665 144.215 GGCSGWGC 13.96 4.4263 144.093 CAMTCARS 18.0 7.54488 118.401 TWATTBRY 14.24 5.26477 114.527 KGSGCRTG 15.18 6.02813 107.906 CGGGRCBK 22.92 11.5012 104.186 RCCRATAG 8.78 2.4864 100.542 RGKAKGBG 33.52 20.3051 95.3416 GCGCABGC 8.16 2.26991 94.8966 TYYYATTG 17.0 7.73637 92.109 TGGMTRND 42.7 28.6808 88.881 YTWATTBR 15.32 6.76684 87.0701 GTSACRTV 11.48 4.3283 85.9758 TCSRCCYM 24.06 13.2219 84.9728 ATNMRAAH 21.62 11.4155 83.7036 TRATTSGA 6.82 1.79471 83.5441 CGCANGCG 7.12 2.00297 80.0408 ACTTCCGK 5.44 1.22136 78.9303 RGGBASGG 21.66 11.8033 76.104 GATTSGAY 6.5 1.76272 75.9423 GGYGTGGY 11.82 4.89052 73.7958 TTGGHCRR 18.6 9.65317 72.7367 TGTMDNTM 22.32 12.5769 70.8612 TGANYGAC 8.46 2.928 70.3959 GATYSGTR 7.12 2.21223 68.9715 AVHGRMAG 38.84 26.6268 68.7759 GGATHGGY 10.58 4.32449 66.3671 GCGKWGCB 17.56 9.18235 66.1036 AAYWAMRD 21.22 12.0137 65.2167 GARGSMGG 24.1 14.3065 65.0409 GGGNNTGG 32.82 21.6027 64.9492 AYGTSACY 8.82 3.35343 62.0286 TDCAAAYN 13.28 6.30068 61.3667 TGACRTMA 5.22 1.38011 61.1177 CSAATAGN 11.5 5.1483 59.6036 CGGAAGTV 6.78 2.2433 58.7214 RGGYGKGY 29.26 19.063 57.5219 GGHGGGGD 26.26 16.539 57.4744 ATTNNCAT 10.54 4.59768 57.0477 AWVRCAAV 19.0 10.8839 54.0282 DAAYWAAV 16.56 9.01876 53.8574 GGGNNCGG 24.68 15.6515 51.0216 AHCYGGAA 8.68 3.63529 49.489 TTSGYTCN 18.96 11.1702 48.4189 TTRHATWH 10.94 5.2524 46.6605 GSAWRYGD 26.88 17.8597 46.0314 GYGTGKCY 13.24 7.01826 44.082 ACGCCCMY 8.76 3.96456 41.3684 HRGCAASN 29.24 20.2842 41.1634 AYGAWTGG 5.76 2.09052 40.6207 WGCGHDCG 9.6 4.59076 39.9665 ATTBGYYT 12.12 6.41493 39.4721 AWKCRYAN 22.52 14.6746 39.2345 RGCAASNR 23.22 15.2775 39.0352 AMTCARGW 8.96 4.2446 37.5703 AATTSGYT 5.36 1.95615 36.7104 RYAARSAH 21.98 14.545 34.9103 GRAGGGGC 9.26 4.59679 34.1064 GCRMGCKC 10.82 5.7675 33.1334 GGGACTTB 6.34 2.67656 32.6883 RGAKSGMG 23.4 16.0054 31.7483 ATYSGTRV 11.84 6.60254 31.7019 TCMAGKYH 20.06 13.1798 31.6919 TCABTCAH 7.74 3.67022 30.9322 AATVGRAA 7.16 3.3105 30.0307 MAAGATGS 4.72 1.75344 30.0307 AABATGGC 3.94 1.30868 29.8878 WGKGKGTG 12.24 7.01107 29.831 CTTMCGGV 8.76 4.45714 29.2352 RSAARGSR 36.04 27.5482 29.1715 CGRRKKCG 12.48 7.24875 28.9201 BTTGYTWV 17.42 11.2223 28.5855 TGSGYAGD 12.88 7.62596 27.8181 TDCMDKTC 21.34 14.5789 27.734 ADAATWHA 7.32 3.51196 27.6923 WWTWCAAR 7.82 3.86497 27.5707 TMAAVATR 5.86 2.54203 27.4448 CGTYACKN 7.6 3.72753 27.1827 GGWSGAGB 20.58 14.012 26.7739 CGGWGCYD 15.06 9.42873 26.7515 GGCHGGRH 28.56 20.9933 26.7375 VAATKAGV 14.78 9.241 26.2006 WYDCWAAS 19.16 12.8599 26.1633 TSGCTRBC 15.2 9.61994 25.6465 RKGGGAGG 13.8 8.52249 25.1983 GGCGKGYC 11.1 6.42251 24.8824 ATSARMGH 15.44 9.90465 24.4197 ATGACGWM 2.78 0.806163 24.2099 TATBYATW 3.72 1.32355 24.0097 CTGGGMDD 30.26 22.8512 23.6366 AATBARMT 8.68 4.6758 23.4789 AMTVRCTG 12.8 7.87931 22.9032 ARGVHSGA 30.22 22.9401 22.4978 GSAAGTNC 9.12 5.06957 22.2122 ACWACRAM 3.62 1.31353 22.1176 TCACRTGR 5.08 2.22135 22.0342 TARCATHW 4.94 2.13416 21.927 ACGKCACR 3.04 1.02164 20.5088 ATVRRAWG 14.42 9.41794 19.8006 KCKTMCGG 6.82 3.53068 19.249 GCTGSGMD 20.52 14.6637 19.0 YMGGYADS 23.96 17.6977 18.9216 GGNCGGTG 5.7 2.76414 18.7325 AVYGAWTG 8.96 5.15 18.6456 AWYAAGDW 10.56 6.39822 18.5176 WCRRANSC 37.2 29.9239 18.293 GTARTTHN 7.38 4.00906 17.8292 TGACWGGY 6.58 3.42924 17.7592 RGCCTATV 5.42 2.61659 17.6397 RKBCTGGG 21.84 16.0105 17.1269 AYYNACCA 11.9 7.56882 17.0655 RGKWMGWR 29.86 23.2535 17.0073 RGRCARAG 12.6 8.19534 16.317 CGTSRYCD 15.2 10.3556 16.3166 TCYGGGWH 13.34 8.8336 15.9526 TTRYYWTD 18.44 13.1643 15.8886 GVGCRAGS 14.56 9.85626 15.876 GRMMGAKR 24.54 18.5566 15.8476 TYKGTCYV 19.32 13.9549 15.6339 TGGGGYSG 8.58 5.04298 15.5843 ANWTGTAG 4.76 2.25308 15.4791 CCABTCAV 10.22 6.33733 15.4489 RDAGGTRG 14.06 9.55576 14.5096 KGYWTSYK 36.48 29.8572 13.839 TGTKTAYW 4.56 2.18639 13.7628 KMRCTSRG 27.92 21.8941 13.6697 AATKASGW 5.08 2.55417 13.6098 GGRAKKAG 14.0 9.60049 13.4384 WCGTSATC 2.82 1.07363 13.4078 RGVWAAKR 31.18 24.9485 13.3598 AYTTRAAR 5.26 2.7131 12.9318 RSAWRCYR 33.5 27.2053 12.7349 AAVNGAMA 16.16 11.5108 12.7131 GASDAVGR 28.96 23.0161 12.4346 AATGTAGT 1.2 0.247425 12.3389 MWAATGAR 5.8 3.14298 12.1545 GCCTATVR 5.06 2.61569 11.9748 GAKKGGGY 14.34 10.0271 11.9434 ANACWACA 4.66 2.33493 11.9194 SCRGRTCB 18.06 13.2486 11.8872 GYCGHDCG 7.62 4.53409 11.8823 KACGSAHG 5.1 2.66736 11.4974 ARTTTMRA 4.42 2.19094 11.38 WGTGYGYW 8.98 5.64612 11.2803 GTGGGRYN 18.04 13.3038 11.2261 TBTGASTG 6.66 3.8423 11.1517 TRRGAWMB 23.56 18.2436 11.1406 GCGHRCGD 9.94 6.4433 10.9763 AAARAAAA 4.0 1.92861 10.7204 GMGCDHCG 12.64 8.72978 10.4219 RAAGHGAV 16.56 12.1012 10.3772 TBCTGGGW 10.36 6.84002 10.3138 KCAAGAMH 7.86 4.83247 10.2188 ATAGGCYR 3.86 1.86121 10.0336 ATTMAYTW 3.06 1.32806 10.0249 TATDTAMC 2.0 0.684372 10.006 TMCGGTYB 5.6 3.11263 9.97064 KYGCGCAS 7.22 4.35965 9.79071 AGYGASKS 12.9 9.01134 9.77048 TATSGCGA 1.18 0.272362 9.71204 GGYGSGAK 12.56 8.73441 9.65316 WAATTMYN 9.5 6.1904 9.64944 ATNGRCAG 7.98 4.97501 9.54384 ACABMSAC 8.56 5.43825 9.54294 ACSGYCCM 7.16 4.33302 9.48797 TTMRGKWW 12.66 8.84317 9.40183 CGCGCANG 4.42 2.28133 9.40179 DAGGBGTG 11.26 7.67511 9.28169 TRCATAHN 5.32 2.95182 9.11368 RVCTKGAG 16.28 12.0175 8.92337 TGAWTGGG 4.72 2.52808 8.78265 AYTVGGYA 6.3 3.7248 8.58755 YSAGYRWS 31.9 26.3524 8.41498 GYRACKCR 7.66 4.8087 8.32612 ASWTMCWK 16.3 12.1381 8.02599 CCTGGRHN 29.72 24.3724 7.9848 GGGGTGTG 2.52 1.05437 7.89905 CVGYAGCS 14.82 10.863 7.84251 CGGATWSG 3.78 1.90163 7.82535 GRYCGTWS 4.28 2.27926 7.39391 ACACTSTA 1.76 0.614135 7.27903 GCKCAGYS 12.62 9.03385 7.15691 WTGTAGTC 1.64 0.55086 7.10399 GCGKRGTY 9.42 6.33927 7.08629 GAKWSGMR 26.06 21.1223 6.95232 WDACAAGB 9.34 6.28542 6.94518 TCKMKCTH 12.92 9.33208 6.778 GGWRCCKG 11.02 7.71467 6.70965 CGDAASCG 3.78 1.95551 6.66792 TSAAATWH 4.22 2.2742 6.64292 RTHTCTAD 7.16 4.53818 6.59248 TMATTAGC 1.44 0.454801 6.50922 GGTGDGTR 6.04 3.66069 6.48807 WGYCRTTG 6.88 4.32716 6.4257 TCSRATMG 3.88 2.03972 6.40886 ACTSAAAA 2.14 0.86662 6.31725 TYGGTRRA 6.28 3.86223 6.28938 KDGACARG 11.84 8.45592 6.28507 AATVGGAK 6.24 3.83539 6.22352 AVGADCCA 9.84 6.77665 6.12253 AKCRCRTG 5.12 2.98396 5.97884 ATACWYAS 2.62 1.18646 5.95974 ACDMAYTY 8.9 6.01813 5.84575 GSDACGGV 9.48 6.50225 5.83325 KRYCTKWG 21.34 16.9788 5.619 GAARDGGR 18.24 14.1771 5.55074 AASGGHSG 10.48 7.38284 5.4392 AGDDCAAV 14.84 11.2023 5.10493 GRTCKMTV 9.48 6.58506 4.95831 KGARYTYG 10.16 7.16096 4.94512 TKCWARRY 15.18 11.5287 4.90153 RVGAKAKG 20.32 16.1563 4.88367 DACTCWRR 13.94 10.438 4.87008 AGVSWTGC 8.68 5.93868 4.7066 GSADSMAG 28.82 24.0716 4.69248 TGTGYHTD 10.2 7.22673 4.63207 TWGMTAGG 2.82 1.37513 4.61469 TCYRGATC 2.74 1.32048 4.60816 AWSGAWRM 13.04 9.68739 4.54926 TGAYRGAY 4.88 2.89129 4.53098 AAKTCYSA 6.2 3.93132 4.46609 TTGATYGA 1.84 0.738297 4.45009 ACTCSGYC 3.94 2.19605 4.27003 ACRTGAMA 2.66 1.28072 4.24998 TAACCCTW 1.56 0.575668 4.24278 TGGMCAGY 6.64 4.32149 4.00322 GGCGMRCG 5.02 3.03539 3.98516 VCTKGAGV 23.14 18.8899 3.96857 CAASAAMV 8.46 5.82404 3.96773 AGGSCGTG 3.28 1.7299 3.95345 ADCSAACC 5.14 3.13973 3.82662 TKBGCAAG 4.62 2.73967 3.78027 RRGKTAGR 10.76 7.79976 3.75014 GDATTCTR 3.76 2.09198 3.74167 GCTHAGRK 10.94 7.96224 3.68424 ATSGCKRS 11.02 8.04484 3.56388 AAGMAAAV 6.0 3.8412 3.5529 ATGYHGAT 2.42 1.14953 3.46641 ACGGCMRC 2.74 1.37502 3.35167 TTAADAWA 3.0 1.56145 3.29645 GTGWATTY 1.98 0.864607 3.28548 AGMGASVA 11.82 8.78943 3.1385 TCSMTCCC 6.18 4.02161 3.10735 GGACTACR 1.68 0.682275 3.04874 TDGYCCCG 7.62 5.21688 2.96816 TACRACTC 1.08 0.338683 2.85648 TTSYGTTW 4.4 2.63163 2.83556 AGCATNHG 7.12 4.82376 2.72891 CGWRMCGV 8.64 6.09735 2.72615 TWCBGHCY 20.64 16.7991 2.64045 GGCSGAAS 6.24 4.11815 2.52915 ATNARATA 2.36 1.14902 2.49363 TGCTAWKG 3.18 1.74211 2.31496 TAGTTTDA 1.56 0.636207 2.1314 MAGASKCR 14.62 11.4087 2.07435 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete