Task #3350 - 7580633c Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 38 minutes (2337sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) HGATWASV 67.2851 24.5708 1308.75 CKWATCDN 57.9818 19.3259 1173.47 TTAWCTNH 54.9519 25.3003 638.031 GGGYGKGG 12.9071 3.20973 277.595 ATWMGVRN 46.0358 27.7925 236.93 DGGGYGKG 21.6231 10.8327 149.649 DCKGATHR 26.5483 14.6694 146.448 GGYGKGGY 13.5344 5.36418 145.813 KTWATCWN 41.9915 27.9644 138.968 TATMTNYV 43.2862 29.7601 125.246 GGVHSGAG 19.8478 11.2716 92.5088 GRGGNHGG 28.15 18.047 91.8406 AKYAKATA 11.9194 5.65597 84.4154 RGGHWSGR 36.8126 26.2497 79.4656 ARWTMAAV 24.733 15.8039 78.0786 GTATDYDH 16.7112 9.81455 65.9535 AAWABNAA 19.8879 12.3693 65.6404 TGAGYCAY 7.79498 3.38401 63.5623 WDCKGATH 24.4661 16.3483 62.2241 CYGAGYCR 8.56914 4.11159 55.2493 WRWRTATK 14.7624 8.7828 53.5167 AAASNVAA 25.6407 17.8652 52.9621 TYSVWTYC 25.0133 17.425 51.152 TTAWCTNG 12.7469 7.40719 48.6189 GRTSGMDB 32.3145 24.1144 48.0381 CSRHCYCK 18.9936 12.4846 47.726 GGKMSGKR 15.3897 9.55353 47.2258 AHATACNN 17.3518 11.245 45.3064 TGRMYTYD 36.292 28.0886 43.6037 GRASGNMG 20.8756 14.4416 41.1025 ATWMGVYN 35.4912 27.5665 40.6949 HRCSATCB 15.63 10.0937 39.9957 GGABBHGR 35.2643 27.4442 39.5547 GATHAARN 22.5974 16.0255 39.5273 CGCNCSGS 3.48372 1.22947 37.5617 CKGATHGS 7.4079 3.81327 37.3644 CGCVSBCG 3.10998 1.03278 36.6744 HGTATKYD 13.9349 8.88207 36.5036 AYRCRCAC 7.44794 3.88047 36.1501 RCSATCYB 15.1095 9.88328 35.7324 GCWGAGBC 12.9471 8.19297 34.2162 AWNMAAAY 24.0523 17.7062 33.478 AWATGHWW 15.7368 10.5595 32.8624 YNDGGATB 35.4378 28.2395 31.8176 AVCRAHCR 12.787 8.27269 30.009 VTGGRTGB 19.8879 14.2827 29.9975 TWRTCRHY 20.8089 15.1413 29.2124 GMVCTSGR 17.5654 12.33 29.1496 TDCWKAGY 22.3038 16.5415 28.0796 GGGGAGGR 5.37907 2.66225 27.945 RGKBASMG 36.6124 29.6942 27.8939 TCHCYRSC 27.3225 21.0868 27.6906 GCAYRCRC 5.87293 3.0203 27.6366 GYGKGGYB 19.6076 14.2286 27.1983 RGGAYYNR 33.7694 27.0874 27.1677 WHNGTMAY 35.9183 29.1422 26.7801 RMATATRD 9.54351 5.86344 25.9046 GARBYSAG 24.5195 18.7217 25.5116 CSDNCCTK 32.2744 25.8803 25.083 GNABVGAY 33.8761 27.3966 24.8968 GGCHGRGB 22.6775 17.1278 24.7336 TGYGDKYG 15.6033 10.931 24.7278 TCBRCCYH 26.8553 20.9123 24.6689 TGBMTKYC 25.5739 19.8577 23.3294 TATWYWWW 13.0005 8.83514 23.0028 GCGDBCGV 3.43033 1.47934 22.9782 WWAVCAAB 23.0646 17.6494 22.5595 TAARVRMA 24.2258 18.7461 21.9953 TTGTTTTN 6.16658 3.43157 21.8584 CGGMSCGB 2.20235 0.760575 21.5345 AHWTDGWA 18.1527 13.4022 20.9476 RRGMCAGR 27.7896 22.1026 20.9184 WSTMAYTB 32.1676 26.2408 20.2636 AANCAABH 23.6652 18.4095 19.9953 TTTAATYN 5.35238 2.90163 19.8581 TYGAACTY 2.62947 1.04579 19.688 THRCTWTR 12.1463 8.33781 19.3581 TTTRRAAW 8.32888 5.24488 18.6008 GGYGBGBG 12.2664 8.50668 18.2706 GTMACYNH 25.1869 19.9705 18.0915 ACRVACRD 19.6743 14.9909 17.9066 RMGTCAYB 12.5467 8.76728 17.9052 GATYGGMY 3.5638 1.70873 17.3736 AGGTCHBR 14.3219 10.3238 17.3636 WRTATRGH 8.74266 5.65215 17.1403 KRSARWYG 32.3545 26.7775 16.7726 AASKVAAV 26.8687 21.6555 16.6951 KCCRATCR 2.86973 1.27162 16.3285 TGGGGYKG 6.66044 4.04384 16.1119 CTAKGWMN 15.4698 11.4241 15.9732 WGCRYWYG 12.3465 8.73092 15.8723 ATCMGYDV 19.2872 14.8373 15.6288 GMYTYGRR 17.5654 13.3265 15.3064 TTBGWTYG 4.51148 2.44849 15.2218 RRCYYTGR 33.2888 27.8475 15.079 DCWTCCKK 19.5942 15.1684 14.9986 WAHGAAHK 17.3385 13.2398 13.9372 TGYCTNTG 13.9349 10.2418 13.895 AGDAARYR 23.3316 18.6985 13.6251 TCANTTYC 9.32995 6.33494 13.5828 TBACTMAY 8.16871 5.389 13.3773 TAATCTHN 9.81046 6.75916 13.2099 GCCKGSSY 14.7624 11.046 12.8768 YGGGGASR 8.71596 5.89867 12.3602 CSTGVGYB 22.2637 17.853 12.2827 CGKSGCYN 8.91618 6.0948 11.8735 ACVMAYSC 12.5467 9.19461 11.7873 SGCGRCGV 1.9087 0.763558 11.7038 STGGRGAB 19.8078 15.6709 11.6651 TGGTRRCD 10.8783 7.77634 11.5178 TNGRTYGK 9.50347 6.61211 11.4764 ACYGARBB 19.354 15.2883 11.3588 YSCKATCD 11.6391 8.4428 11.3381 GATMGBRV 15.2296 11.5963 11.223 RTTMMAGG 7.72824 5.15139 11.2043 KGARWBMG 31.1265 26.2682 11.042 GGABSGGS 7.30112 4.83177 10.6712 TATYMGTS 5.03203 3.02154 10.6643 GCWSGRHG 18.1393 14.2586 10.6239 WWRAATAK 8.40897 5.77385 10.2324 AGDASGNA 18.3129 14.4908 9.8517 ATCBGATG 2.496 1.19116 9.7523 GGATGHYD 11.4923 8.43613 9.73863 AASAVMWA 23.772 19.5349 9.57678 GTVMYBGG 19.4608 15.6153 9.07209 TTTYAAAN 7.98185 5.49195 9.04733 CVAYCRHS 20.3684 16.4567 8.9795 TGWKYGYA 9.8772 7.11746 8.74679 ACGCCCVV 3.5638 1.99304 8.54668 TTARAAAN 7.64816 5.25086 8.45612 CGMCGCSS 1.17459 0.399269 7.8956 GCKGSGRY 9.47678 6.86098 7.56164 CWGRGCTR 16.1506 12.7599 7.5614 TRTGCRTK 4.9653 3.11508 7.55301 RGACAGRR 13.8014 10.6531 7.53682 GNVCTHTG 28.3502 24.0821 7.50097 DGCCTGGV 16.7379 13.3032 7.44703 TTTYYTTC 7.56807 5.24889 7.44236 RCYCMGDG 21.9968 18.1425 7.34771 AGHACHBA 24.0657 20.07 7.34595 GCVAYCRH 11.866 8.95992 7.29993 AGDGCTVG 10.6647 7.91304 7.24397 GARGHGSG 9.81046 7.17311 7.23316 AHYTACDW 13.0272 9.9964 7.18503 AKTGRNTG 12.9872 9.97253 7.05553 WGSGASGN 19.1137 15.5199 6.99827 TGGADVGA 10.024 7.38544 6.87849 RYATRGYB 19.1137 15.5393 6.82429 TRGGATBV 9.45008 6.89602 6.79078 ASTTRKCW 16.7512 13.3831 6.78974 DACATWTK 7.38121 5.13522 6.78537 AGDGGGCG 2.53604 1.31031 6.67424 TRVCRAYC 8.35558 5.97768 6.52021 ACCWWGHV 20.7822 17.138 6.31103 CSATCYGN 8.43566 6.06987 6.19125 AWBMAAWG 18.2595 14.8573 5.90692 AHAKGHAS 27.3492 23.369 5.73544 AKRWATGM 11.2787 8.58111 5.7015 MRCATSCR 8.04859 5.77626 5.68395 GGWATWTG 2.42926 1.26838 5.62102 CATRCSTD 6.01975 4.0771 5.59374 CTGYMTRS 18.2061 14.8516 5.5252 AAAAAWAA 4.13775 2.57401 5.25967 AMTTKAAH 6.21997 4.26669 5.21369 AGMGRMWG 19.5275 16.1238 5.07156 TTTDCATW 4.81847 3.12862 5.03008 AKRAASAA 10.8783 8.28782 5.0243 CGGKCSGV 1.80192 0.850622 4.98936 AGGTSGVK 8.19541 5.95597 4.95595 TRYHTTGW 17.3518 14.132 4.95549 CATAYWTS 3.88414 2.38995 4.94579 RGSMAAGV 29.5115 25.5469 4.87526 RTCKSTMK 16.8713 13.7071 4.8174 TAAYTNCA 5.99306 4.10543 4.78184 RTGGMTTB 9.54351 7.13963 4.75399 CTCRSYMK 21.3828 17.8888 4.74238 CGCTKCGV 1.05446 0.384572 4.62987 GCGVCGGR 1.3481 0.564744 4.53895 WCHGTATD 7.55473 5.44618 4.43413 KTAGSTHD 14.8825 11.9411 4.37672 GASMTAGB 9.12974 6.8149 4.32018 GRCGGAGB 3.01655 1.75141 4.26278 AGCRMGYR 7.24773 5.19996 4.21976 TMKGKKYG 16.551 13.4888 4.15847 ACTYRGGW 6.47357 4.57572 3.76197 TTYGARAC 2.65617 1.50281 3.7009 CGCTYBCG 1.02776 0.387981 3.5604 TAKKTACV 3.89749 2.4712 3.50865 GYTSGMTY 8.26215 6.12776 3.50309 GAASBWGR 21.6765 18.3362 3.42639 TCTAKGWM 5.04538 3.41254 3.31374 ARTWCBAK 9.99733 7.67007 3.2515 CSMCGMCK 3.51041 2.18305 3.14742 WMWRTAGB 20.8089 17.5655 3.11699 TWATCMGG 4.27122 2.79594 3.04308 TTSVSTYS 23.2248 19.8595 2.94315 GGAWSCAG 5.65937 3.94999 2.89225 TAWAGWAY 3.77736 2.41764 2.69438 KSCSGCCG 1.58836 0.768769 2.6935 KAGCRMKK 13.7613 11.1299 2.49228 TGGKGGTG 3.57715 2.2696 2.47185 TTAMAGRY 7.35451 5.42686 2.45235 GKASGABY 10.9183 8.56657 2.44972 ATTAAMVA 3.64389 2.32463 2.43537 GNCGYCGK 1.89536 0.99221 2.41441 TCVCTVGG 6.74052 4.9142 2.24651 DCACTGWR 15.1628 12.4459 2.20191 GWATGAAD 3.65723 2.3511 2.13475 TAYYTCAN 14.0683 11.4607 2.05328 HGCKGGGV 15.7902 13.0418 2.04982 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete