Motif finder

Task #3348 - a493f6ac

Status Start End Updated Duration Sequences Logs Task Bundle
finished 4 months ago 4 months ago 4 months ago 20 minutes (1259sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
WTGTAGTY 15.7862 1.69603 302.358
RCSAATSR 26.3518 6.62124 256.669
DGGGYGGG 37.3213 12.9728 255.977
TGTAGTYY 17.2778 2.68671 253.853
ATTSGHYR 25.5127 6.35826 249.463
GGGHGGGG 29.0864 8.38402 244.101
GATTSGHY 19.7328 3.99272 232.033
TACAWNTC 14.5743 2.18253 217.263
ACTACAWH 14.885 2.36845 211.408
GGCGGGRC 21.0068 5.06591 206.89
CSAATCRV 19.3909 4.57105 193.726
ANWTGTAG 15.4755 2.97429 185.982
RKGGGYGG 33.903 13.7872 173.145
RCWTMCKG 28.6513 11.1038 152.54
ACAWNTCC 16.8738 4.55643 140.421
GGGANWTG 20.0435 6.44154 134.628
GTAGTYYN 21.9702 8.08588 120.526
MGSAWGYR 37.9739 19.5395 119.281
RCMGKAWG 26.5693 11.1986 117.966
RRCSAATR 17.4021 6.21985 95.8124
TTCCKGTB 18.3033 6.95166 91.2462
AWYTCCCA 12.3679 3.54269 90.7157
TNYGATTG 11.4667 3.08438 90.6264
CSAATRRR 18.3033 7.18437 85.6748
GCGCABGC 10.5656 2.95303 78.2324
GCGGGRCB 22.8403 10.635 77.7803
TKCTGGGA 10.2859 2.91504 74.3518
AATBARMR 18.5208 7.99174 71.2868
TTGGYTRN 21.0379 9.77485 70.3501
DRKGGGYG 41.734 26.3093 70.0046
GGGYGGGH 23.2753 11.6661 65.7166
GGARGBGG 28.5581 15.878 63.2774
GAGGBSGG 22.9335 11.7201 60.9571
AABATGGC 6.05966 1.31659 56.6386
GGGYSGAG 13.7352 5.61924 55.2419
TRCGCAYG 4.94096 0.940579 51.7762
ATTSGYYY 14.7607 6.66249 48.0438
WHTCCCAG 15.6308 7.44157 44.9536
RCSAATAR 7.8931 2.59542 42.7194
GGCSGWGC 11.8086 5.01483 41.907
TCSGCCCH 15.9105 7.91004 40.6335
CGCASGCG 6.86762 2.11739 40.1803
GSAMGYRM 28.8067 18.2374 38.3669
CGGKRCBD 32.5979 21.5334 37.7744
AHDCRMAB 38.6576 26.9913 36.8654
RTGACRTM 6.92977 2.26851 36.5731
AGATAAGV 4.66128 1.11551 36.4553
KCTGGGAD 17.4643 9.37813 35.983
GGGGAGGG 8.32815 3.16485 34.4046
TGASRTMA 7.1473 2.5735 31.6093
TCCKGYYY 27.5948 17.934 31.4785
ACGTSAYY 7.86203 3.03228 30.8713
AYRRGAAH 19.2666 11.1851 30.7968
ATKCTGGG 5.25171 1.574 29.9579
TCTMATTD 5.93536 1.9619 29.3901
TARTTYDH 13.207 6.71706 29.3182
KGKGYGTG 13.6731 7.0865 28.8793
RASBGACR 17.9304 10.3807 28.0235
TTMCKGCY 14.8539 8.05518 27.6168
TCSAATCR 4.07085 1.04707 27.5624
AGGYGGGR 14.2946 7.6802 27.0514
RTTWCCTG 8.0174 3.30476 27.0361
CTTATCTN 5.00311 1.53663 26.8888
TCGCGAKA 2.82784 0.532295 26.1711
GGGCGTGG 5.56246 1.87264 25.9842
GSAHRCHG 35.9851 26.016 25.658
ADMGVAAG 20.6029 12.7446 25.5737
AGGWAAYR 10.0062 4.71419 25.3513
GRGGSAGG 17.0292 9.97466 24.6593
GGATTSGY 5.62461 1.97099 24.2609
GGTGGRGB 14.481 8.13922 23.074
AMGSAWGY 14.7296 8.38663 22.4057
CATKCTGG 4.66128 1.50993 22.0094
WCCCCKCC 14.5432 8.2911 21.8509
AKATGGCG 3.79117 1.07438 21.2538
TGGHTVHK 36.5755 27.3605 20.1027
RRCWTMCK 27.0354 18.8913 19.4954
TCYRGGTH 10.7831 5.70159 18.9003
CCATVTTN 9.32256 4.65026 18.8769
CWTMCKGR 20.1678 13.1434 18.5469
AYGATTSG 3.1386 0.825569 18.4911
CSAATCCV 6.96085 3.07758 18.141
CAMTCAVS 13.0516 7.47509 18.061
GATTSGTR 3.54257 1.0478 17.7537
RTCRNTCR 11.5289 6.38815 17.2233
AAHDSAAA 14.2014 8.4462 17.2176
TTGGWCNR 12.7719 7.34012 17.1569
TGCGCAGD 5.71784 2.35795 16.5374
ACTACAAG 2.48602 0.568874 16.5343
GCSGAGCB 13.6731 8.10082 16.493
ARYRACRR 16.3145 10.2143 16.411
GCMAVGCM 17.3089 11.0945 15.7812
GATAAGVN 8.0174 3.95245 15.5622
TATKYDWA 5.87321 2.51158 15.4533
GAARKGRV 35.7676 27.3845 15.3161
ATGGCBRC 8.04848 4.02454 14.8159
GSWAABGR 20.4475 13.8489 14.6825
TYCYATTG 6.80547 3.21998 13.8911
GAWVSMGR 38.036 29.7642 13.7699
CATCTTGV 3.6358 1.23941 13.4465
ACCYRGAH 10.0373 5.60014 13.2188
RMGHWMGR 35.7054 27.8048 12.5717
HDCAAASV 28.4649 21.2073 12.3916
ACACWTMC 4.84773 2.02331 12.1537
ATTSGTRR 5.18956 2.26704 11.6923
CGTCAYCR 4.28838 1.69595 11.6918
GKKMGGTG 9.32256 5.2124 11.4501
GCSTKGCY 14.0149 8.90543 11.3419
TKMGTCAY 5.62461 2.57771 11.2794
CGCGCAYG 3.1386 1.04153 11.2087
GVATTCKG 4.84773 2.09191 10.8159
YDMGCRAS 22.716 16.3532 10.7774
GTCACGTG 2.14419 0.543467 10.7239
TDWGGTWH 13.3002 8.40573 10.6341
ARYRCRCA 10.7831 6.42797 10.4088
AADMBGAA 14.885 9.76516 10.0878
TCRCTCDV 12.6787 8.03806 9.43216
ACSCCCHC 11.0628 6.77763 9.12608
ANWGATAA 4.5059 1.9771 8.81545
WGCGHKCG 8.73213 5.00318 8.74082
MGTTCKHD 13.5488 8.82956 8.7275
HRGCAACV 11.7464 7.38902 8.51609
GGCGKGYC 10.4102 6.32548 8.51483
AGWAWRSA 10.8142 6.64733 8.49028
GMGBAAGY 16.9049 11.6819 8.38552
RRKACCBR 22.9335 16.9577 8.1879
AAAMAAAA 4.3816 1.93197 8.15572
YYRGVTCS 31.7589 25.0023 8.00058
ACCKMMCM 13.0827 8.54019 7.95692
AWRTYCCA 7.3959 4.09288 7.63423
CGCDAGRB 14.6053 9.85192 7.5715
CMGKAMGR 17.2157 12.1281 7.13103
TCAGTBWH 11.8086 7.61015 7.02726
AWRRHAAC 13.6731 9.14764 7.00818
GGGHWVGG 23.7415 17.9351 6.70428
TAAWHAAA 3.6358 1.52775 6.70348
TGCGCBTG 5.00311 2.44422 6.60523
AWGSCRRG 18.179 13.0409 6.59792
GATYGRCR 5.56246 2.84529 6.48684
WGACRBAY 11.5289 7.44856 6.47144
TYAAAGRB 8.04848 4.69238 6.44614
GCCSCTCS 10.4723 6.60203 6.40283
GRMSGAAG 16.8117 11.9059 6.29514
RVGTMACG 6.37042 3.44763 6.25347
CGGSDKCG 14.2946 9.7881 6.11389
RBTCHAGV 33.3748 26.9018 6.07844
AYDGAYAG 7.73773 4.48929 6.07383
AGSYRKAG 19.2045 14.0311 6.00049
KTTYAAAB 6.74332 3.75565 5.87109
CCCAGMAV 14.046 9.6214 5.80552
DTGMTADG 7.6445 4.45079 5.72343
TMCBGTYR 12.0572 7.99411 5.56373
TGMTARGN 9.41579 5.85213 5.55227
TTTRAAAD 4.84773 2.41284 5.46149
CGVCTCCN 21.8148 16.4609 5.3137
TKCCKKKA 14.6675 10.2309 5.22085
GYGYMTGY 14.45 10.0631 5.10313
RAVGGTGG 8.73213 5.37665 4.93686
WACCWHAN 17.6507 12.8543 4.89334
GGAAKTHG 7.30267 4.27057 4.85924
TAATTGGY 1.80236 0.535615 4.69721
GTKCDYWG 15.5687 11.0942 4.61168
TATRKCWA 2.33064 0.827907 4.61124
GRCARMSR 28.3095 22.511 4.57812
GAAKTMRV 12.2436 8.28669 4.51724
CCGHMTCK 10.6277 6.95147 4.5124
AATTVGHT 3.6358 1.6493 4.45261
RDCAAGAH 9.97514 6.46077 4.1737
TGGYTNGH 18.9559 14.126 4.16289
GKRTRTGR 9.85084 6.36464 4.13349
AGGDASGR 17.4021 12.7711 4.09091
TTCRAVTY 4.69236 2.39967 4.08963
RCYATTSG 6.30827 3.59136 4.01996
ACTSAAAA 2.42387 0.907707 3.98232
CTAATWSG 1.89559 0.609133 3.93122
AATTTAGA 1.02548 0.195561 3.85903
AVDYACTK 16.8117 12.3179 3.71725
GCWMRGHK 32.629 26.764 3.57397
TTCSKTMY 12.0261 8.23941 3.541
GAARTAYG 2.29956 0.855415 3.47281
GVNCTHTG 30.3294 24.6392 3.43799
CAGRCABV 19.0491 14.3505 3.37717
GCWCTGSV 18.179 13.6064 3.22706
TACMSWTC 4.133 2.06915 3.18235
CTRGAGHS 14.6986 10.5718 3.17346
TATCTNWN 10.0994 6.7096 3.00263
GCWGWGCR 11.4978 7.87864 2.95596
TTDKATAN 5.96644 3.43027 2.94826
TACGDBTC 3.23182 1.46959 2.92839
WKAAWTAV 6.40149 3.77199 2.84827
GBCKGGAK 18.3344 13.8889 2.44561
TGYAWWTM 6.05966 3.55804 2.34741
YCTTTAAS 3.44935 1.65148 2.34602
TGGGGYGG 6.49472 3.91597 2.12938
CAARGCMD 11.6221 8.10641 2.10774
TCSRCCTY 9.81976 6.60778 2.02757

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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