Task #3348 - a493f6ac Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 20 minutes (1259sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) WTGTAGTY 15.7862 1.69603 302.358 RCSAATSR 26.3518 6.62124 256.669 DGGGYGGG 37.3213 12.9728 255.977 TGTAGTYY 17.2778 2.68671 253.853 ATTSGHYR 25.5127 6.35826 249.463 GGGHGGGG 29.0864 8.38402 244.101 GATTSGHY 19.7328 3.99272 232.033 TACAWNTC 14.5743 2.18253 217.263 ACTACAWH 14.885 2.36845 211.408 GGCGGGRC 21.0068 5.06591 206.89 CSAATCRV 19.3909 4.57105 193.726 ANWTGTAG 15.4755 2.97429 185.982 RKGGGYGG 33.903 13.7872 173.145 RCWTMCKG 28.6513 11.1038 152.54 ACAWNTCC 16.8738 4.55643 140.421 GGGANWTG 20.0435 6.44154 134.628 GTAGTYYN 21.9702 8.08588 120.526 MGSAWGYR 37.9739 19.5395 119.281 RCMGKAWG 26.5693 11.1986 117.966 RRCSAATR 17.4021 6.21985 95.8124 TTCCKGTB 18.3033 6.95166 91.2462 AWYTCCCA 12.3679 3.54269 90.7157 TNYGATTG 11.4667 3.08438 90.6264 CSAATRRR 18.3033 7.18437 85.6748 GCGCABGC 10.5656 2.95303 78.2324 GCGGGRCB 22.8403 10.635 77.7803 TKCTGGGA 10.2859 2.91504 74.3518 AATBARMR 18.5208 7.99174 71.2868 TTGGYTRN 21.0379 9.77485 70.3501 DRKGGGYG 41.734 26.3093 70.0046 GGGYGGGH 23.2753 11.6661 65.7166 GGARGBGG 28.5581 15.878 63.2774 GAGGBSGG 22.9335 11.7201 60.9571 AABATGGC 6.05966 1.31659 56.6386 GGGYSGAG 13.7352 5.61924 55.2419 TRCGCAYG 4.94096 0.940579 51.7762 ATTSGYYY 14.7607 6.66249 48.0438 WHTCCCAG 15.6308 7.44157 44.9536 RCSAATAR 7.8931 2.59542 42.7194 GGCSGWGC 11.8086 5.01483 41.907 TCSGCCCH 15.9105 7.91004 40.6335 CGCASGCG 6.86762 2.11739 40.1803 GSAMGYRM 28.8067 18.2374 38.3669 CGGKRCBD 32.5979 21.5334 37.7744 AHDCRMAB 38.6576 26.9913 36.8654 RTGACRTM 6.92977 2.26851 36.5731 AGATAAGV 4.66128 1.11551 36.4553 KCTGGGAD 17.4643 9.37813 35.983 GGGGAGGG 8.32815 3.16485 34.4046 TGASRTMA 7.1473 2.5735 31.6093 TCCKGYYY 27.5948 17.934 31.4785 ACGTSAYY 7.86203 3.03228 30.8713 AYRRGAAH 19.2666 11.1851 30.7968 ATKCTGGG 5.25171 1.574 29.9579 TCTMATTD 5.93536 1.9619 29.3901 TARTTYDH 13.207 6.71706 29.3182 KGKGYGTG 13.6731 7.0865 28.8793 RASBGACR 17.9304 10.3807 28.0235 TTMCKGCY 14.8539 8.05518 27.6168 TCSAATCR 4.07085 1.04707 27.5624 AGGYGGGR 14.2946 7.6802 27.0514 RTTWCCTG 8.0174 3.30476 27.0361 CTTATCTN 5.00311 1.53663 26.8888 TCGCGAKA 2.82784 0.532295 26.1711 GGGCGTGG 5.56246 1.87264 25.9842 GSAHRCHG 35.9851 26.016 25.658 ADMGVAAG 20.6029 12.7446 25.5737 AGGWAAYR 10.0062 4.71419 25.3513 GRGGSAGG 17.0292 9.97466 24.6593 GGATTSGY 5.62461 1.97099 24.2609 GGTGGRGB 14.481 8.13922 23.074 AMGSAWGY 14.7296 8.38663 22.4057 CATKCTGG 4.66128 1.50993 22.0094 WCCCCKCC 14.5432 8.2911 21.8509 AKATGGCG 3.79117 1.07438 21.2538 TGGHTVHK 36.5755 27.3605 20.1027 RRCWTMCK 27.0354 18.8913 19.4954 TCYRGGTH 10.7831 5.70159 18.9003 CCATVTTN 9.32256 4.65026 18.8769 CWTMCKGR 20.1678 13.1434 18.5469 AYGATTSG 3.1386 0.825569 18.4911 CSAATCCV 6.96085 3.07758 18.141 CAMTCAVS 13.0516 7.47509 18.061 GATTSGTR 3.54257 1.0478 17.7537 RTCRNTCR 11.5289 6.38815 17.2233 AAHDSAAA 14.2014 8.4462 17.2176 TTGGWCNR 12.7719 7.34012 17.1569 TGCGCAGD 5.71784 2.35795 16.5374 ACTACAAG 2.48602 0.568874 16.5343 GCSGAGCB 13.6731 8.10082 16.493 ARYRACRR 16.3145 10.2143 16.411 GCMAVGCM 17.3089 11.0945 15.7812 GATAAGVN 8.0174 3.95245 15.5622 TATKYDWA 5.87321 2.51158 15.4533 GAARKGRV 35.7676 27.3845 15.3161 ATGGCBRC 8.04848 4.02454 14.8159 GSWAABGR 20.4475 13.8489 14.6825 TYCYATTG 6.80547 3.21998 13.8911 GAWVSMGR 38.036 29.7642 13.7699 CATCTTGV 3.6358 1.23941 13.4465 ACCYRGAH 10.0373 5.60014 13.2188 RMGHWMGR 35.7054 27.8048 12.5717 HDCAAASV 28.4649 21.2073 12.3916 ACACWTMC 4.84773 2.02331 12.1537 ATTSGTRR 5.18956 2.26704 11.6923 CGTCAYCR 4.28838 1.69595 11.6918 GKKMGGTG 9.32256 5.2124 11.4501 GCSTKGCY 14.0149 8.90543 11.3419 TKMGTCAY 5.62461 2.57771 11.2794 CGCGCAYG 3.1386 1.04153 11.2087 GVATTCKG 4.84773 2.09191 10.8159 YDMGCRAS 22.716 16.3532 10.7774 GTCACGTG 2.14419 0.543467 10.7239 TDWGGTWH 13.3002 8.40573 10.6341 ARYRCRCA 10.7831 6.42797 10.4088 AADMBGAA 14.885 9.76516 10.0878 TCRCTCDV 12.6787 8.03806 9.43216 ACSCCCHC 11.0628 6.77763 9.12608 ANWGATAA 4.5059 1.9771 8.81545 WGCGHKCG 8.73213 5.00318 8.74082 MGTTCKHD 13.5488 8.82956 8.7275 HRGCAACV 11.7464 7.38902 8.51609 GGCGKGYC 10.4102 6.32548 8.51483 AGWAWRSA 10.8142 6.64733 8.49028 GMGBAAGY 16.9049 11.6819 8.38552 RRKACCBR 22.9335 16.9577 8.1879 AAAMAAAA 4.3816 1.93197 8.15572 YYRGVTCS 31.7589 25.0023 8.00058 ACCKMMCM 13.0827 8.54019 7.95692 AWRTYCCA 7.3959 4.09288 7.63423 CGCDAGRB 14.6053 9.85192 7.5715 CMGKAMGR 17.2157 12.1281 7.13103 TCAGTBWH 11.8086 7.61015 7.02726 AWRRHAAC 13.6731 9.14764 7.00818 GGGHWVGG 23.7415 17.9351 6.70428 TAAWHAAA 3.6358 1.52775 6.70348 TGCGCBTG 5.00311 2.44422 6.60523 AWGSCRRG 18.179 13.0409 6.59792 GATYGRCR 5.56246 2.84529 6.48684 WGACRBAY 11.5289 7.44856 6.47144 TYAAAGRB 8.04848 4.69238 6.44614 GCCSCTCS 10.4723 6.60203 6.40283 GRMSGAAG 16.8117 11.9059 6.29514 RVGTMACG 6.37042 3.44763 6.25347 CGGSDKCG 14.2946 9.7881 6.11389 RBTCHAGV 33.3748 26.9018 6.07844 AYDGAYAG 7.73773 4.48929 6.07383 AGSYRKAG 19.2045 14.0311 6.00049 KTTYAAAB 6.74332 3.75565 5.87109 CCCAGMAV 14.046 9.6214 5.80552 DTGMTADG 7.6445 4.45079 5.72343 TMCBGTYR 12.0572 7.99411 5.56373 TGMTARGN 9.41579 5.85213 5.55227 TTTRAAAD 4.84773 2.41284 5.46149 CGVCTCCN 21.8148 16.4609 5.3137 TKCCKKKA 14.6675 10.2309 5.22085 GYGYMTGY 14.45 10.0631 5.10313 RAVGGTGG 8.73213 5.37665 4.93686 WACCWHAN 17.6507 12.8543 4.89334 GGAAKTHG 7.30267 4.27057 4.85924 TAATTGGY 1.80236 0.535615 4.69721 GTKCDYWG 15.5687 11.0942 4.61168 TATRKCWA 2.33064 0.827907 4.61124 GRCARMSR 28.3095 22.511 4.57812 GAAKTMRV 12.2436 8.28669 4.51724 CCGHMTCK 10.6277 6.95147 4.5124 AATTVGHT 3.6358 1.6493 4.45261 RDCAAGAH 9.97514 6.46077 4.1737 TGGYTNGH 18.9559 14.126 4.16289 GKRTRTGR 9.85084 6.36464 4.13349 AGGDASGR 17.4021 12.7711 4.09091 TTCRAVTY 4.69236 2.39967 4.08963 RCYATTSG 6.30827 3.59136 4.01996 ACTSAAAA 2.42387 0.907707 3.98232 CTAATWSG 1.89559 0.609133 3.93122 AATTTAGA 1.02548 0.195561 3.85903 AVDYACTK 16.8117 12.3179 3.71725 GCWMRGHK 32.629 26.764 3.57397 TTCSKTMY 12.0261 8.23941 3.541 GAARTAYG 2.29956 0.855415 3.47281 GVNCTHTG 30.3294 24.6392 3.43799 CAGRCABV 19.0491 14.3505 3.37717 GCWCTGSV 18.179 13.6064 3.22706 TACMSWTC 4.133 2.06915 3.18235 CTRGAGHS 14.6986 10.5718 3.17346 TATCTNWN 10.0994 6.7096 3.00263 GCWGWGCR 11.4978 7.87864 2.95596 TTDKATAN 5.96644 3.43027 2.94826 TACGDBTC 3.23182 1.46959 2.92839 WKAAWTAV 6.40149 3.77199 2.84827 GBCKGGAK 18.3344 13.8889 2.44561 TGYAWWTM 6.05966 3.55804 2.34741 YCTTTAAS 3.44935 1.65148 2.34602 TGGGGYGG 6.49472 3.91597 2.12938 CAARGCMD 11.6221 8.10641 2.10774 TCSRCCTY 9.81976 6.60778 2.02757 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 0 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete