Motif finder

Task #3336 - 1aa73828

Status Start End Updated Duration Sequences Logs Task Bundle
finished 4 months ago 4 months ago 4 months ago 4 hours (16092sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
TRTTKACH 46.6707 12.9314 1682.0
GTMAAYAN 47.4649 13.8824 1613.82
RTTKAYHY 55.2404 29.5329 712.649
TTTRYHTW 44.5589 24.0844 499.046
TMAAYADB 48.931 28.7039 452.946
AAYMAAYA 21.0228 9.65303 287.496
TGRMCTYD 32.289 18.4247 275.921
GVMCTYDG 36.9753 22.3831 272.253
RAGKYCAN 38.4501 24.0076 257.705
AARCAARS 22.8903 11.7095 246.042
GGGHGGGG 7.60974 2.06962 227.192
TTRHTTWK 35.6837 22.6347 219.226
GGGGHGGG 7.4352 2.06962 215.48
KACHTWGN 32.2541 20.3991 193.488
GRGGBHGG 21.4242 11.9439 179.585
AGKTCRND 29.1736 18.4823 169.247
AAAVAAAA 15.6645 7.93258 164.26
TTGACWTW 8.49987 3.31207 149.423
RGDCHRAG 36.7222 25.7071 148.464
WTGTWTGY 14.1897 7.26901 143.092
TRWTTGCW 14.085 7.49521 128.185
ACTTDGNH 32.2018 22.4019 128.106
TVRCTHWG 30.3168 20.9787 121.492
GGYVGRVG 21.5638 13.7185 115.281
GTHBACAR 19.7836 12.4101 110.115
RSGHWSGR 35.2649 25.9878 106.38
CTWKGYWV 37.7084 28.7354 94.9069
GVASGNMG 22.4016 15.1694 92.5519
RRGAHAGR 29.1299 21.0547 92.1334
RCCTYDGY 24.5309 17.0359 91.1317
TTYGTTYG 6.10001 2.5964 89.9224
GAGNNAGG 20.8482 14.001 88.3026
TRYGTAYN 15.4464 9.60297 86.1583
TTRDGYAA 14.8617 9.21932 83.2454
WGVGRYRG 32.6294 24.6051 83.153
CGCSBSCG 2.09442 0.442022 82.1868
RCTCRSKV 23.8764 16.8857 80.8514
ATMRAYAB 17.5583 11.5072 80.6379
TTKYTTTC 11.5193 6.66857 80.2763
TTKAYWSA 22.803 16.0029 79.585
AGMYARGV 25.7003 18.5875 78.4402
AAYWARRM 32.6206 24.8453 77.9102
ACWRAGMH 29.4354 21.9947 76.9046
TAAYCCYA 4.67755 1.88359 76.4455
GCMCYGNS 21.2933 14.8434 75.904
ARAMHGAA 17.3924 11.6032 73.8823
AARAAAAB 16.1707 10.601 73.4417
WYCSYABC 21.7122 15.32 73.0465
GCGNGCGS 1.94607 0.435568 71.9438
CWCCDCCS 9.55581 5.37575 71.765
TSVMYTYC 37.08 29.3835 70.0686
TAMRYABA 20.6039 14.4708 69.8865
GTDYGYAY 11.7375 7.21307 66.763
GTYCAARG 6.10874 3.01317 65.0894
AWTCVATB 10.4023 6.22094 64.6759
YTGYCCTB 19.4083 13.703 63.9017
AGSSCMGV 20.9617 15.073 63.4167
AANHGAAA 17.2528 11.9188 62.3197
RCAWRCAS 21.3806 15.5303 61.3779
MTSGRATB 14.3381 9.52236 60.8468
TRTYKATM 10.4983 6.42529 60.2066
CGBKCGSB 3.57797 1.41679 60.0763
TCNGCYTC 9.5209 5.6942 58.9351
ACRCRCAC 6.34436 3.31229 58.5158
VKCACYGN 25.744 19.5711 58.2009
AWTVABTA 11.5891 7.36159 58.1435
GTSSKNGG 16.8514 11.7525 57.9402
ACCMCSMC 6.46653 3.43311 57.0181
GAAYKVAH 18.012 12.7917 56.936
TTAWCTWD 9.18056 5.52097 55.6786
SGCGDCGS 1.64936 0.403763 55.4497
RRWKAAMG 22.7158 17.0278 54.7315
CACSCMCV 9.50345 5.81851 54.18
CCABCACB 9.49472 5.83859 53.2822
TGYMCTKK 21.1537 15.727 52.9311
CRGCCYBG 11.3273 7.32904 52.7334
GSASGHGG 9.7827 6.08516 52.6967
TSCSTSCS 9.95724 6.23244 52.4404
ATSAAYDA 8.52605 5.11958 51.848
SCTMASCB 16.6245 11.8412 51.2391
ATTYGYWT 7.45266 4.32794 50.4812
GGKCRYNG 14.1548 9.81212 49.2693
GCMMGSCY 14.4777 10.0885 49.2151
KACRGAKN 18.876 13.8983 49.1715
GSCTGGSC 8.07226 4.85435 48.7604
AARBAHGA 17.3488 12.5829 48.7187
CRGGCHSG 9.33764 5.90601 47.1362
TAYVYAAB 15.9002 11.4057 46.9708
GGWYRGKG 11.6502 7.82857 46.236
CSYTCCSK 7.33048 4.38547 44.9824
TTARAAAW 8.10716 4.99413 44.9785
AKAGYRAR 15.1671 10.8681 44.8581
GCSGYCGS 1.38756 0.354338 44.606
DRCTCAGV 21.2671 16.2733 44.3427
AGMCYTKG 12.3309 8.5165 43.2491
TAAAAWWA 8.25552 5.18503 42.65
GRAGHYVG 21.7035 16.8431 41.2104
TAMHYACB 18.204 13.7158 41.0333
GGAWVGAN 15.682 11.497 40.9888
TCACTGNV 13.4392 9.55908 40.9212
AWRTACAH 10.891 7.40681 40.7936
YGAVCBAN 24.496 19.4323 40.456
WMYTAACY 9.18056 6.01644 40.1783
GASNTGGV 21.5551 16.775 40.0754
CGVMGCGS 1.597 0.496047 39.9655
ACMTWGHH 23.7543 18.8557 38.8011
DRCSAAHG 16.2667 12.0998 38.652
GGRGGGGG 3.40344 1.63615 38.5885
TSMKTTCB 18.0557 13.7342 38.2501
AGYGAKYB 11.9993 8.43228 38.1069
GCGGVSCG 1.18684 0.30627 37.8424
AAATHRAA 9.48599 6.39749 36.7145
GYAYGYGY 6.46653 3.96992 36.2133
GAAADGWM 13.3694 9.69871 36.0929
CWCYGTRN 26.8697 21.9251 35.9071
CWTGYTYG 8.21189 5.38357 35.7924
TGYCTYWG 13.0029 9.42789 35.6428
TKYAATCC 3.92704 2.06968 35.3392
KVCMAAGS 24.2342 19.5255 35.2776
AWKCYARG 14.9489 11.1485 35.1783
GATTDCRD 8.63077 5.75114 35.1384
AAGAAMAA 5.42805 3.19452 35.1309
KTRCTMWG 14.9228 11.1288 35.1151
ACCCTAAC 1.27411 0.37723 34.222
WCSSAGCD 11.6764 8.33121 34.1838
TTGGHTTB 12.4444 9.02025 34.0807
RRYAWGCR 16.1096 12.2561 33.6759
AWSRTKAA 11.3622 8.11411 33.5581
RGCSTRSG 8.09844 5.37814 33.4213
TTBGTWRW 18.3786 14.3022 33.4188
KCCKCCCN 12.1913 8.83305 32.912
RTYBAYYG 18.8847 14.7952 32.829
GTACTTDG 2.7053 1.26646 32.7415
TGTRTGYG 7.29558 4.75214 32.6112
TWACCTTD 5.87311 3.6236 32.315
GGGATTAM 2.11188 0.887947 32.1145
AAARATYA 6.23964 3.92515 31.9604
AGWCCAKS 9.14565 6.35491 30.7896
AGKTCABC 6.24836 3.98384 30.4087
AWWGASAA 10.5856 7.60468 30.2166
TSGAAYTC 2.98455 1.50853 30.1006
MTTAWCYN 15.9613 12.336 30.0135
TAMTTAAV 4.18885 2.39061 29.9903
RCSTKCSY 14.1635 10.7189 29.7532
WMKGTMGH 13.8756 10.496 29.7475
TRGWATBK 14.8006 11.3222 29.6408
MGABGRMR 22.1136 17.9881 29.2256
AMCWYBGA 16.0136 12.4495 28.9164
AACCCTAA 1.50973 0.566538 28.4406
AMYGAADM 14.0501 10.7252 28.4351
RCDTRGTG 7.94136 5.45819 28.111
ARHYAYYG 26.4421 22.1276 27.8258
KAGMCSRG 8.58714 6.02391 27.5772
TGCGCRYG 1.09957 0.347076 27.241
CRCWCACS 5.86439 3.78883 27.1205
ATRTRTAC 2.72275 1.38626 27.0483
GASSKRMG 11.9033 8.9132 26.9683
DNGMAATG 19.068 15.3573 26.834
ACCMTGYC 4.70373 2.87709 26.7809
CSGGKCGN 1.7279 0.72574 26.5172
CGAVCGBB 1.81517 0.783722 26.3603
CAGCTACK 2.05079 0.93836 26.326
CSTMCSBD 16.9212 13.4087 26.1031
GGDCTACR 3.38598 1.89329 25.9263
ABGWAGMN 24.5135 20.4774 25.8574
GRASGHTG 8.79658 6.30621 25.3092
AGGGYKRG 8.37769 5.96023 25.0709
MRCTBGGS 17.2877 13.8749 24.7763
WDGGMAMG 17.6542 14.2157 24.6895
TTYGAGAC 2.24278 1.09956 24.5948
TVSVTTCD 23.0997 19.2153 24.4413
ATYKHATY 12.0342 9.17424 24.3889
CGYCGCCN 1.1083 0.380053 24.3711
AAACCAAM 4.32848 2.6718 23.9245
CGSWKNCG 2.36495 1.20105 23.7755
GCCSYWSC 9.08456 6.62957 23.7611
TTTMRAAA 8.07226 5.76521 23.6852
AGTBCYWG 13.893 10.8779 23.638
CAGSYCAG 9.31146 6.83914 23.4976
GWTCKHDG 14.5912 11.523 23.3857
TGAMWTHW 22.2969 18.6095 23.355
CHGCWCBG 12.2611 9.40305 23.3342
KCBTCCKG 10.0009 7.45539 23.1786
CMAKGTYS 12.4007 9.57272 23.1698
GTAGCTGG 1.64063 0.720106 23.1667
GGMVGAGM 11.3273 8.63677 22.8966
WCCCRCCC 3.52561 2.07937 22.8938
TAGCTGGG 1.87625 0.88579 22.5988
AWATGBAW 9.91361 7.41376 22.5475
AKCACKYG 4.06667 2.51003 22.5337
AGAAHHAA 14.1635 11.1956 22.5131
WRGCMCYG 13.1774 10.3323 22.1448
TCRKTWWC 8.35151 6.08222 22.0947
CGSMCGGB 1.44864 0.614537 21.9915
ATTWAVAA 8.16825 5.93362 21.9151
HGTRGACD 10.123 7.63507 21.8727
TCRAKRCC 4.35466 2.77345 21.4627
CSCMCCCR 4.5641 2.94643 21.3193
DAMGCAAK 7.32176 5.24078 21.2676
TGGTGGYG 2.54822 1.39293 21.0644
GCACDCRC 4.13649 2.60208 20.9778
GRVMTYCG 4.47683 2.89329 20.838
AACCRAHC 3.72633 2.29732 20.8083
TGAKTVAB 13.2909 10.5256 20.7828
GGGGAHGG 3.01946 1.75567 20.6531
GACTCBGN 7.23449 5.19883 20.5948
GTGBGGTG 4.10158 2.60388 20.513
TGMKTTKS 15.6995 12.7392 20.4438
TGKYTGYC 11.912 9.31495 20.3511
ATMKWTGM 7.71446 5.62772 20.2474
TTCRAGGC 1.99843 1.01604 20.204
GTKCCMGG 4.49428 2.93074 20.1909
AGGAYWRC 7.08613 5.09468 20.1323
ATRHAATW 8.45624 6.28326 19.99
DGCSGCCG 1.09085 0.420982 19.909
CTTBGGAD 8.89257 6.67528 19.7835
GMSGMGGG 3.88341 2.45491 19.7815
TRGAHMGA 7.24321 5.25482 19.614
CKGSGHAB 15.4726 12.5496 19.5436
TYGATCTB 3.95322 2.52145 19.4624
GGHAGYRG 10.315 7.95787 19.3012
AANGGAWA 8.53478 6.39568 19.1955
TNRCTMAY 17.6455 14.633 19.1571
AGMAADGS 16.1183 13.243 18.9104
TGAMCTGD 7.91518 5.88004 18.7587
TTRATTWM 6.38799 4.57079 18.6623
ACTCAGMH 7.14722 5.2211 18.6567
GGCTYSGS 4.45065 2.95564 18.5825
KGGGGWTG 4.38956 2.90697 18.5513
GATNGCTY 4.79972 3.24445 18.5259
GGWCAGVM 13.256 10.6569 18.4859
TRCVCMGY 12.8894 10.3365 18.3162
RCAGANVG 22.3143 19.0808 18.2315
AWCTKARC 5.77712 4.07436 18.2077
GGYABGTG 5.00044 3.42472 18.1848
TGWMCCTK 9.58199 7.37995 18.1402
TGACATWG 2.33005 1.3038 18.127
TTHNCTTC 12.7411 10.2177 18.1004
GCCACCRY 3.13291 1.91816 18.0823
GGAGHGVG 7.57483 5.62333 18.0457
KGWTGTTK 11.9557 9.51682 17.9615
TKAMTGAR 8.37769 6.33091 17.9246
AATTMDTW 6.83306 4.99875 17.727
WAYMTWTG 12.4967 10.0377 17.5321
AGCKAMTY 3.65651 2.3594 17.3022
AAKGTCYW 7.26067 5.39347 17.2613
AGGMGGAK 4.34593 2.92296 17.2299
KVTGTTYG 13.4392 10.9198 17.2167
CATNCVTK 14.085 11.5145 17.1679
RGGRKGCG 2.67039 1.58795 17.141
AATMGWAT 1.83262 0.964963 17.0644
TTCSAKGW 7.00759 5.19647 16.8482
TGCYKRGC 8.33406 6.36176 16.76
GGKTCRKD 10.9434 8.70048 16.5945
YCACCRTV 5.86439 4.22908 16.5245
GSCHASGR 14.469 11.9239 16.469
AGWDMGAY 10.4459 8.2667 16.3947
AWGGAWAA 5.62004 4.02858 16.3654
GWSCRSGC 7.07741 5.28433 16.357
ATRMGRWM 11.72 9.4251 16.2916
AGKVCAAA 9.04093 7.03118 16.0739
GGGWGYGG 3.98813 2.67852 15.9906
AABYCRAA 9.6169 7.55817 15.8829
ACCKTTSG 2.09442 1.18586 15.8654
TRATTMBA 6.41417 4.74098 15.771
ATTAMAGG 2.82747 1.75278 15.7443
TTGCRWCA 3.07182 1.95324 15.5348
TANGAAAW 6.50144 4.83212 15.4881
RTSGTATG 1.38756 0.683603 15.4726
ACTMYGVM 12.008 9.75532 15.4005
TCKCWCTC 4.36338 3.01916 15.277
CGSHWCGS 1.61445 0.848374 15.2485
RRCTHCAG 13.9366 11.5403 15.2025
TAAMGHWA 6.97269 5.26295 15.1353
ABRCAGAY 10.4983 8.41087 15.0479
RTTBGYTM 13.893 11.5138 15.0421
WGGKTCAD 12.0255 9.80022 15.0347
KCRCCACS 3.29872 2.15989 14.8564
TVTCACTR 5.85566 4.30899 14.831
ACNGAGTD 8.6744 6.78873 14.8041
GGWBAAGG 5.59386 4.09374 14.6364
GCGYSGGS 1.67554 0.906596 14.6333
AWARTMKA 8.55223 6.70732 14.3955
AANAAYGA 6.18728 4.62386 14.3319
AKGCRWGS 8.51732 6.6809 14.3256
RCRDATRM 19.2338 16.5673 14.3157
WCGSBCGC 1.07339 0.49158 14.2896
TSGTCTAC 1.0123 0.452723 14.1994
CAGCYAKG 6.57998 4.97523 14.1838
AATYCTAR 2.79256 1.78022 14.0955
TTATRTAY 2.24278 1.35185 13.9657
GGKGRYAG 7.3043 5.63161 13.8792
GDSCCTGG 8.55223 6.74995 13.779
GTCBYDGC 9.84379 7.91897 13.7097
CRTGCACN 3.66524 2.50769 13.6676
TTGGSAGG 3.90086 2.70427 13.6564
GCYAMTGH 9.67798 7.77904 13.5752
TGTCCYYA 4.79972 3.46803 13.5685
CTCCBGRS 9.82634 7.91517 13.5523
ACWARMYA 15.49 13.138 13.4889
AATMGWTA 1.57082 0.857593 13.4693
TVTCKTTC 4.49428 3.21364 13.4528
GAACTRBR 7.48756 5.8236 13.4262
CTWMCBKD 29.7932 26.7707 13.4252
TTRRGAMA 9.99215 8.0802 13.3637
AACADCWA 8.04608 6.32608 13.3595
TTGGCWVY 14.3206 12.063 13.3405
RNAATKAG 11.5281 9.48526 13.3253
RAGTBCTR 11.5281 9.48627 13.3133
TNAGMACK 8.83149 7.03943 13.242
AYGACGWM 1.02976 0.477757 13.1319
GATCAAWG 1.88498 1.1013 13.1316
AGTTGRCA 2.77511 1.80437 13.0257
CCCCRYCK 3.76996 2.6229 13.0255
CACKKCCB 7.81045 6.1399 13.0061
GGKWMGAG 4.63391 3.35561 12.9918
GCTMYGNG 9.01475 7.22415 12.981
AGCMAKCY 10.2714 8.37156 12.8959
AWCKATWW 5.63749 4.22928 12.8621
ATTKCHCA 7.95008 6.28042 12.7842
TTYMWTTG 10.5594 8.64396 12.7802
GRGCTCAG 3.04564 2.034 12.7689
TMACTYGR 4.13649 2.95206 12.5892
ADTKAYAG 10.0358 8.18234 12.5805
TAGKTCAV 3.96195 2.80805 12.5113
AGCMTRGW 8.12462 6.46019 12.4631
ARTTAATS 2.56567 1.65697 12.4416
AWWTGMAC 5.82948 4.42193 12.4409
TYTAMCCW 7.75809 6.13771 12.3711
WTAGYDAY 9.01475 7.27089 12.3694
TCKMCCTC 3.01946 2.02944 12.346
TCSCADCC 4.21503 3.03333 12.2948
GKGGTTAG 1.60572 0.91339 12.277
GHTGGSMG 9.72162 7.92076 12.2758
GYKCRGAG 5.78585 4.39816 12.2018
GTYGKTTG 3.05437 2.06537 12.1687
GTCCTYWG 4.74736 3.49945 12.1106
MCACTGWV 15.3591 13.1544 12.1099
TCCMCCMC 4.37211 3.17711 12.1059
GGCSCSGC 1.18684 0.612803 12.0205
TTMAYTGH 9.51217 7.7557 11.9594
AACMKWGC 6.73706 5.25506 11.948
ACSAWMCM 7.64465 6.0691 11.9103
TTWCGYAA 1.0123 0.493338 11.8814
ADRCWYAG 22.166 19.6529 11.6998
WRCTATGM 3.8136 2.72272 11.6751
WTGAAYTG 3.36853 2.35452 11.5226
AGRMAAAC 7.31303 5.80329 11.4707
AAGGCHGR 7.67083 6.1267 11.4487
WTCSTSCC 5.98656 4.62791 11.3631
KRCSCMGG 7.76682 6.22853 11.2467
TCSVTKGS 10.6903 8.90219 11.19
TGCCMKGC 4.80845 3.6094 11.0981
ANRTRACC 10.2103 8.47146 11.0662
AACYTWGK 7.19085 5.72375 11.0586
ACACCMCC 2.97583 2.04757 11.051
AWSCTAAC 2.36495 1.54625 11.0481
AGAKAGAG 4.3372 3.20566 11.0083

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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