Task #3336 - 1aa73828 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 4 hours (16092sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TRTTKACH 46.6707 12.9314 1682.0 GTMAAYAN 47.4649 13.8824 1613.82 RTTKAYHY 55.2404 29.5329 712.649 TTTRYHTW 44.5589 24.0844 499.046 TMAAYADB 48.931 28.7039 452.946 AAYMAAYA 21.0228 9.65303 287.496 TGRMCTYD 32.289 18.4247 275.921 GVMCTYDG 36.9753 22.3831 272.253 RAGKYCAN 38.4501 24.0076 257.705 AARCAARS 22.8903 11.7095 246.042 GGGHGGGG 7.60974 2.06962 227.192 TTRHTTWK 35.6837 22.6347 219.226 GGGGHGGG 7.4352 2.06962 215.48 KACHTWGN 32.2541 20.3991 193.488 GRGGBHGG 21.4242 11.9439 179.585 AGKTCRND 29.1736 18.4823 169.247 AAAVAAAA 15.6645 7.93258 164.26 TTGACWTW 8.49987 3.31207 149.423 RGDCHRAG 36.7222 25.7071 148.464 WTGTWTGY 14.1897 7.26901 143.092 TRWTTGCW 14.085 7.49521 128.185 ACTTDGNH 32.2018 22.4019 128.106 TVRCTHWG 30.3168 20.9787 121.492 GGYVGRVG 21.5638 13.7185 115.281 GTHBACAR 19.7836 12.4101 110.115 RSGHWSGR 35.2649 25.9878 106.38 CTWKGYWV 37.7084 28.7354 94.9069 GVASGNMG 22.4016 15.1694 92.5519 RRGAHAGR 29.1299 21.0547 92.1334 RCCTYDGY 24.5309 17.0359 91.1317 TTYGTTYG 6.10001 2.5964 89.9224 GAGNNAGG 20.8482 14.001 88.3026 TRYGTAYN 15.4464 9.60297 86.1583 TTRDGYAA 14.8617 9.21932 83.2454 WGVGRYRG 32.6294 24.6051 83.153 CGCSBSCG 2.09442 0.442022 82.1868 RCTCRSKV 23.8764 16.8857 80.8514 ATMRAYAB 17.5583 11.5072 80.6379 TTKYTTTC 11.5193 6.66857 80.2763 TTKAYWSA 22.803 16.0029 79.585 AGMYARGV 25.7003 18.5875 78.4402 AAYWARRM 32.6206 24.8453 77.9102 ACWRAGMH 29.4354 21.9947 76.9046 TAAYCCYA 4.67755 1.88359 76.4455 GCMCYGNS 21.2933 14.8434 75.904 ARAMHGAA 17.3924 11.6032 73.8823 AARAAAAB 16.1707 10.601 73.4417 WYCSYABC 21.7122 15.32 73.0465 GCGNGCGS 1.94607 0.435568 71.9438 CWCCDCCS 9.55581 5.37575 71.765 TSVMYTYC 37.08 29.3835 70.0686 TAMRYABA 20.6039 14.4708 69.8865 GTDYGYAY 11.7375 7.21307 66.763 GTYCAARG 6.10874 3.01317 65.0894 AWTCVATB 10.4023 6.22094 64.6759 YTGYCCTB 19.4083 13.703 63.9017 AGSSCMGV 20.9617 15.073 63.4167 AANHGAAA 17.2528 11.9188 62.3197 RCAWRCAS 21.3806 15.5303 61.3779 MTSGRATB 14.3381 9.52236 60.8468 TRTYKATM 10.4983 6.42529 60.2066 CGBKCGSB 3.57797 1.41679 60.0763 TCNGCYTC 9.5209 5.6942 58.9351 ACRCRCAC 6.34436 3.31229 58.5158 VKCACYGN 25.744 19.5711 58.2009 AWTVABTA 11.5891 7.36159 58.1435 GTSSKNGG 16.8514 11.7525 57.9402 ACCMCSMC 6.46653 3.43311 57.0181 GAAYKVAH 18.012 12.7917 56.936 TTAWCTWD 9.18056 5.52097 55.6786 SGCGDCGS 1.64936 0.403763 55.4497 RRWKAAMG 22.7158 17.0278 54.7315 CACSCMCV 9.50345 5.81851 54.18 CCABCACB 9.49472 5.83859 53.2822 TGYMCTKK 21.1537 15.727 52.9311 CRGCCYBG 11.3273 7.32904 52.7334 GSASGHGG 9.7827 6.08516 52.6967 TSCSTSCS 9.95724 6.23244 52.4404 ATSAAYDA 8.52605 5.11958 51.848 SCTMASCB 16.6245 11.8412 51.2391 ATTYGYWT 7.45266 4.32794 50.4812 GGKCRYNG 14.1548 9.81212 49.2693 GCMMGSCY 14.4777 10.0885 49.2151 KACRGAKN 18.876 13.8983 49.1715 GSCTGGSC 8.07226 4.85435 48.7604 AARBAHGA 17.3488 12.5829 48.7187 CRGGCHSG 9.33764 5.90601 47.1362 TAYVYAAB 15.9002 11.4057 46.9708 GGWYRGKG 11.6502 7.82857 46.236 CSYTCCSK 7.33048 4.38547 44.9824 TTARAAAW 8.10716 4.99413 44.9785 AKAGYRAR 15.1671 10.8681 44.8581 GCSGYCGS 1.38756 0.354338 44.606 DRCTCAGV 21.2671 16.2733 44.3427 AGMCYTKG 12.3309 8.5165 43.2491 TAAAAWWA 8.25552 5.18503 42.65 GRAGHYVG 21.7035 16.8431 41.2104 TAMHYACB 18.204 13.7158 41.0333 GGAWVGAN 15.682 11.497 40.9888 TCACTGNV 13.4392 9.55908 40.9212 AWRTACAH 10.891 7.40681 40.7936 YGAVCBAN 24.496 19.4323 40.456 WMYTAACY 9.18056 6.01644 40.1783 GASNTGGV 21.5551 16.775 40.0754 CGVMGCGS 1.597 0.496047 39.9655 ACMTWGHH 23.7543 18.8557 38.8011 DRCSAAHG 16.2667 12.0998 38.652 GGRGGGGG 3.40344 1.63615 38.5885 TSMKTTCB 18.0557 13.7342 38.2501 AGYGAKYB 11.9993 8.43228 38.1069 GCGGVSCG 1.18684 0.30627 37.8424 AAATHRAA 9.48599 6.39749 36.7145 GYAYGYGY 6.46653 3.96992 36.2133 GAAADGWM 13.3694 9.69871 36.0929 CWCYGTRN 26.8697 21.9251 35.9071 CWTGYTYG 8.21189 5.38357 35.7924 TGYCTYWG 13.0029 9.42789 35.6428 TKYAATCC 3.92704 2.06968 35.3392 KVCMAAGS 24.2342 19.5255 35.2776 AWKCYARG 14.9489 11.1485 35.1783 GATTDCRD 8.63077 5.75114 35.1384 AAGAAMAA 5.42805 3.19452 35.1309 KTRCTMWG 14.9228 11.1288 35.1151 ACCCTAAC 1.27411 0.37723 34.222 WCSSAGCD 11.6764 8.33121 34.1838 TTGGHTTB 12.4444 9.02025 34.0807 RRYAWGCR 16.1096 12.2561 33.6759 AWSRTKAA 11.3622 8.11411 33.5581 RGCSTRSG 8.09844 5.37814 33.4213 TTBGTWRW 18.3786 14.3022 33.4188 KCCKCCCN 12.1913 8.83305 32.912 RTYBAYYG 18.8847 14.7952 32.829 GTACTTDG 2.7053 1.26646 32.7415 TGTRTGYG 7.29558 4.75214 32.6112 TWACCTTD 5.87311 3.6236 32.315 GGGATTAM 2.11188 0.887947 32.1145 AAARATYA 6.23964 3.92515 31.9604 AGWCCAKS 9.14565 6.35491 30.7896 AGKTCABC 6.24836 3.98384 30.4087 AWWGASAA 10.5856 7.60468 30.2166 TSGAAYTC 2.98455 1.50853 30.1006 MTTAWCYN 15.9613 12.336 30.0135 TAMTTAAV 4.18885 2.39061 29.9903 RCSTKCSY 14.1635 10.7189 29.7532 WMKGTMGH 13.8756 10.496 29.7475 TRGWATBK 14.8006 11.3222 29.6408 MGABGRMR 22.1136 17.9881 29.2256 AMCWYBGA 16.0136 12.4495 28.9164 AACCCTAA 1.50973 0.566538 28.4406 AMYGAADM 14.0501 10.7252 28.4351 RCDTRGTG 7.94136 5.45819 28.111 ARHYAYYG 26.4421 22.1276 27.8258 KAGMCSRG 8.58714 6.02391 27.5772 TGCGCRYG 1.09957 0.347076 27.241 CRCWCACS 5.86439 3.78883 27.1205 ATRTRTAC 2.72275 1.38626 27.0483 GASSKRMG 11.9033 8.9132 26.9683 DNGMAATG 19.068 15.3573 26.834 ACCMTGYC 4.70373 2.87709 26.7809 CSGGKCGN 1.7279 0.72574 26.5172 CGAVCGBB 1.81517 0.783722 26.3603 CAGCTACK 2.05079 0.93836 26.326 CSTMCSBD 16.9212 13.4087 26.1031 GGDCTACR 3.38598 1.89329 25.9263 ABGWAGMN 24.5135 20.4774 25.8574 GRASGHTG 8.79658 6.30621 25.3092 AGGGYKRG 8.37769 5.96023 25.0709 MRCTBGGS 17.2877 13.8749 24.7763 WDGGMAMG 17.6542 14.2157 24.6895 TTYGAGAC 2.24278 1.09956 24.5948 TVSVTTCD 23.0997 19.2153 24.4413 ATYKHATY 12.0342 9.17424 24.3889 CGYCGCCN 1.1083 0.380053 24.3711 AAACCAAM 4.32848 2.6718 23.9245 CGSWKNCG 2.36495 1.20105 23.7755 GCCSYWSC 9.08456 6.62957 23.7611 TTTMRAAA 8.07226 5.76521 23.6852 AGTBCYWG 13.893 10.8779 23.638 CAGSYCAG 9.31146 6.83914 23.4976 GWTCKHDG 14.5912 11.523 23.3857 TGAMWTHW 22.2969 18.6095 23.355 CHGCWCBG 12.2611 9.40305 23.3342 KCBTCCKG 10.0009 7.45539 23.1786 CMAKGTYS 12.4007 9.57272 23.1698 GTAGCTGG 1.64063 0.720106 23.1667 GGMVGAGM 11.3273 8.63677 22.8966 WCCCRCCC 3.52561 2.07937 22.8938 TAGCTGGG 1.87625 0.88579 22.5988 AWATGBAW 9.91361 7.41376 22.5475 AKCACKYG 4.06667 2.51003 22.5337 AGAAHHAA 14.1635 11.1956 22.5131 WRGCMCYG 13.1774 10.3323 22.1448 TCRKTWWC 8.35151 6.08222 22.0947 CGSMCGGB 1.44864 0.614537 21.9915 ATTWAVAA 8.16825 5.93362 21.9151 HGTRGACD 10.123 7.63507 21.8727 TCRAKRCC 4.35466 2.77345 21.4627 CSCMCCCR 4.5641 2.94643 21.3193 DAMGCAAK 7.32176 5.24078 21.2676 TGGTGGYG 2.54822 1.39293 21.0644 GCACDCRC 4.13649 2.60208 20.9778 GRVMTYCG 4.47683 2.89329 20.838 AACCRAHC 3.72633 2.29732 20.8083 TGAKTVAB 13.2909 10.5256 20.7828 GGGGAHGG 3.01946 1.75567 20.6531 GACTCBGN 7.23449 5.19883 20.5948 GTGBGGTG 4.10158 2.60388 20.513 TGMKTTKS 15.6995 12.7392 20.4438 TGKYTGYC 11.912 9.31495 20.3511 ATMKWTGM 7.71446 5.62772 20.2474 TTCRAGGC 1.99843 1.01604 20.204 GTKCCMGG 4.49428 2.93074 20.1909 AGGAYWRC 7.08613 5.09468 20.1323 ATRHAATW 8.45624 6.28326 19.99 DGCSGCCG 1.09085 0.420982 19.909 CTTBGGAD 8.89257 6.67528 19.7835 GMSGMGGG 3.88341 2.45491 19.7815 TRGAHMGA 7.24321 5.25482 19.614 CKGSGHAB 15.4726 12.5496 19.5436 TYGATCTB 3.95322 2.52145 19.4624 GGHAGYRG 10.315 7.95787 19.3012 AANGGAWA 8.53478 6.39568 19.1955 TNRCTMAY 17.6455 14.633 19.1571 AGMAADGS 16.1183 13.243 18.9104 TGAMCTGD 7.91518 5.88004 18.7587 TTRATTWM 6.38799 4.57079 18.6623 ACTCAGMH 7.14722 5.2211 18.6567 GGCTYSGS 4.45065 2.95564 18.5825 KGGGGWTG 4.38956 2.90697 18.5513 GATNGCTY 4.79972 3.24445 18.5259 GGWCAGVM 13.256 10.6569 18.4859 TRCVCMGY 12.8894 10.3365 18.3162 RCAGANVG 22.3143 19.0808 18.2315 AWCTKARC 5.77712 4.07436 18.2077 GGYABGTG 5.00044 3.42472 18.1848 TGWMCCTK 9.58199 7.37995 18.1402 TGACATWG 2.33005 1.3038 18.127 TTHNCTTC 12.7411 10.2177 18.1004 GCCACCRY 3.13291 1.91816 18.0823 GGAGHGVG 7.57483 5.62333 18.0457 KGWTGTTK 11.9557 9.51682 17.9615 TKAMTGAR 8.37769 6.33091 17.9246 AATTMDTW 6.83306 4.99875 17.727 WAYMTWTG 12.4967 10.0377 17.5321 AGCKAMTY 3.65651 2.3594 17.3022 AAKGTCYW 7.26067 5.39347 17.2613 AGGMGGAK 4.34593 2.92296 17.2299 KVTGTTYG 13.4392 10.9198 17.2167 CATNCVTK 14.085 11.5145 17.1679 RGGRKGCG 2.67039 1.58795 17.141 AATMGWAT 1.83262 0.964963 17.0644 TTCSAKGW 7.00759 5.19647 16.8482 TGCYKRGC 8.33406 6.36176 16.76 GGKTCRKD 10.9434 8.70048 16.5945 YCACCRTV 5.86439 4.22908 16.5245 GSCHASGR 14.469 11.9239 16.469 AGWDMGAY 10.4459 8.2667 16.3947 AWGGAWAA 5.62004 4.02858 16.3654 GWSCRSGC 7.07741 5.28433 16.357 ATRMGRWM 11.72 9.4251 16.2916 AGKVCAAA 9.04093 7.03118 16.0739 GGGWGYGG 3.98813 2.67852 15.9906 AABYCRAA 9.6169 7.55817 15.8829 ACCKTTSG 2.09442 1.18586 15.8654 TRATTMBA 6.41417 4.74098 15.771 ATTAMAGG 2.82747 1.75278 15.7443 TTGCRWCA 3.07182 1.95324 15.5348 TANGAAAW 6.50144 4.83212 15.4881 RTSGTATG 1.38756 0.683603 15.4726 ACTMYGVM 12.008 9.75532 15.4005 TCKCWCTC 4.36338 3.01916 15.277 CGSHWCGS 1.61445 0.848374 15.2485 RRCTHCAG 13.9366 11.5403 15.2025 TAAMGHWA 6.97269 5.26295 15.1353 ABRCAGAY 10.4983 8.41087 15.0479 RTTBGYTM 13.893 11.5138 15.0421 WGGKTCAD 12.0255 9.80022 15.0347 KCRCCACS 3.29872 2.15989 14.8564 TVTCACTR 5.85566 4.30899 14.831 ACNGAGTD 8.6744 6.78873 14.8041 GGWBAAGG 5.59386 4.09374 14.6364 GCGYSGGS 1.67554 0.906596 14.6333 AWARTMKA 8.55223 6.70732 14.3955 AANAAYGA 6.18728 4.62386 14.3319 AKGCRWGS 8.51732 6.6809 14.3256 RCRDATRM 19.2338 16.5673 14.3157 WCGSBCGC 1.07339 0.49158 14.2896 TSGTCTAC 1.0123 0.452723 14.1994 CAGCYAKG 6.57998 4.97523 14.1838 AATYCTAR 2.79256 1.78022 14.0955 TTATRTAY 2.24278 1.35185 13.9657 GGKGRYAG 7.3043 5.63161 13.8792 GDSCCTGG 8.55223 6.74995 13.779 GTCBYDGC 9.84379 7.91897 13.7097 CRTGCACN 3.66524 2.50769 13.6676 TTGGSAGG 3.90086 2.70427 13.6564 GCYAMTGH 9.67798 7.77904 13.5752 TGTCCYYA 4.79972 3.46803 13.5685 CTCCBGRS 9.82634 7.91517 13.5523 ACWARMYA 15.49 13.138 13.4889 AATMGWTA 1.57082 0.857593 13.4693 TVTCKTTC 4.49428 3.21364 13.4528 GAACTRBR 7.48756 5.8236 13.4262 CTWMCBKD 29.7932 26.7707 13.4252 TTRRGAMA 9.99215 8.0802 13.3637 AACADCWA 8.04608 6.32608 13.3595 TTGGCWVY 14.3206 12.063 13.3405 RNAATKAG 11.5281 9.48526 13.3253 RAGTBCTR 11.5281 9.48627 13.3133 TNAGMACK 8.83149 7.03943 13.242 AYGACGWM 1.02976 0.477757 13.1319 GATCAAWG 1.88498 1.1013 13.1316 AGTTGRCA 2.77511 1.80437 13.0257 CCCCRYCK 3.76996 2.6229 13.0255 CACKKCCB 7.81045 6.1399 13.0061 GGKWMGAG 4.63391 3.35561 12.9918 GCTMYGNG 9.01475 7.22415 12.981 AGCMAKCY 10.2714 8.37156 12.8959 AWCKATWW 5.63749 4.22928 12.8621 ATTKCHCA 7.95008 6.28042 12.7842 TTYMWTTG 10.5594 8.64396 12.7802 GRGCTCAG 3.04564 2.034 12.7689 TMACTYGR 4.13649 2.95206 12.5892 ADTKAYAG 10.0358 8.18234 12.5805 TAGKTCAV 3.96195 2.80805 12.5113 AGCMTRGW 8.12462 6.46019 12.4631 ARTTAATS 2.56567 1.65697 12.4416 AWWTGMAC 5.82948 4.42193 12.4409 TYTAMCCW 7.75809 6.13771 12.3711 WTAGYDAY 9.01475 7.27089 12.3694 TCKMCCTC 3.01946 2.02944 12.346 TCSCADCC 4.21503 3.03333 12.2948 GKGGTTAG 1.60572 0.91339 12.277 GHTGGSMG 9.72162 7.92076 12.2758 GYKCRGAG 5.78585 4.39816 12.2018 GTYGKTTG 3.05437 2.06537 12.1687 GTCCTYWG 4.74736 3.49945 12.1106 MCACTGWV 15.3591 13.1544 12.1099 TCCMCCMC 4.37211 3.17711 12.1059 GGCSCSGC 1.18684 0.612803 12.0205 TTMAYTGH 9.51217 7.7557 11.9594 AACMKWGC 6.73706 5.25506 11.948 ACSAWMCM 7.64465 6.0691 11.9103 TTWCGYAA 1.0123 0.493338 11.8814 ADRCWYAG 22.166 19.6529 11.6998 WRCTATGM 3.8136 2.72272 11.6751 WTGAAYTG 3.36853 2.35452 11.5226 AGRMAAAC 7.31303 5.80329 11.4707 AAGGCHGR 7.67083 6.1267 11.4487 WTCSTSCC 5.98656 4.62791 11.3631 KRCSCMGG 7.76682 6.22853 11.2467 TCSVTKGS 10.6903 8.90219 11.19 TGCCMKGC 4.80845 3.6094 11.0981 ANRTRACC 10.2103 8.47146 11.0662 AACYTWGK 7.19085 5.72375 11.0586 ACACCMCC 2.97583 2.04757 11.051 AWSCTAAC 2.36495 1.54625 11.0481 AGAKAGAG 4.3372 3.20566 11.0083 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 11 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 0 Maximum score in the contrast set of sequences 0 Unsupported param 0 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 0 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete