Task #3656 - c821dc42 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 10 minutes (649sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TRTWKACH 66.9 15.278 1462.3 RTTKACHY 54.3 19.8811 620.023 TMAAYANS 54.2 25.5296 394.976 TWKACHYW 55.48 27.4976 366.547 TTKRTYTW 30.1 14.2231 171.595 TKAHYTWK 45.7 27.4352 156.764 TRTTKRTY 29.86 15.297 138.613 GRMCTHNG 38.84 22.8441 131.338 RAAYHAAY 30.96 16.6131 127.698 TTRNGHAA 29.44 15.9429 116.15 KACDTWGN 29.76 16.8414 102.623 GGGGHGGG 7.46 1.83092 101.041 GKDCRNAG 37.84 23.7504 99.1676 RAGKYCAN 41.08 26.7791 95.8929 GGGHGGGG 7.2 1.83092 92.8724 TAAHYABW 32.02 19.2925 91.1384 ARMYAAGV 30.3 18.4245 81.3762 TGYGTACH 9.26 3.22413 77.3849 RTWKACHR 34.7 22.5183 75.4536 AGKTCRND 32.52 21.0601 69.1291 TRTWTGCW 14.64 6.9685 68.6188 CCRCCCCB 7.06 2.28213 64.0524 TGNMCTYW 39.34 27.4428 63.8994 ACBTWGNH 40.7 28.794 62.3861 TAYRCARN 21.92 12.8274 60.4079 AAAMAAAR 12.9 6.09438 59.8737 CGSCBBCG 6.0 1.82698 58.3301 VTTNGCTN 40.6 29.2833 55.2631 ATMMAYAN 28.3 18.4069 55.215 WTRTTTGY 18.52 10.5272 53.7204 TCRAYADW 19.1 11.0765 51.9722 GGYGGSGS 7.86 3.21243 46.3146 GTACRCAH 6.28 2.26333 45.8068 TTYGCTYW 12.2 6.20702 45.2093 GCGGNGCG 2.7 0.496032 43.9804 TDCHTAAB 16.14 9.22995 43.7553 TNGCTHWG 24.28 16.1281 39.6417 RRGRCRGR 32.16 23.0062 39.5384 GCGYKCGN 4.18 1.28634 37.0539 CGMRCGCV 3.6 1.00276 36.2411 RSDYRGTG 31.6 22.8117 36.1485 GYMCTNBG 33.54 24.5816 35.8923 AAMYAYBR 35.2 26.1309 35.4701 GGVVRWGG 34.14 25.2542 34.5571 ARYBAATB 20.66 13.6269 32.4147 ACWVAGMW 33.8 25.2164 31.813 TTKTTTTS 10.34 5.49197 31.5625 TNACYMWG 30.28 22.0824 31.3312 AMCTYWGN 34.4 25.8857 30.6254 ANCRAHGV 33.0 24.6605 30.1096 CGBTCGVN 4.54 1.65578 29.7058 CGGHGCGB 2.98 0.815215 29.3246 GTGTACWY 6.14 2.71529 27.7246 YTGYCYTN 37.92 29.5121 27.2145 TTSGYWRN 35.3 27.1251 26.7812 GGGCNGGG 6.84 3.2331 26.4353 MYTMACYN 33.3 25.3867 25.8364 CKTYGGHN 22.78 16.0258 25.3738 TCSCKHCS 9.7 5.34624 25.1379 AKAYVAAY 15.08 9.5626 25.0857 AACAWGVV 25.72 18.6426 24.9527 WRCCBTDG 27.82 20.5344 24.7296 GCGDCSGS 3.54 1.22825 23.6919 CTYRGMMB 33.3 25.7078 22.9786 AAAAAAAT 2.74 0.827021 22.0379 ATTKCDHA 14.32 9.16919 21.9953 TRATTRRY 9.94 5.73906 21.3686 DGGRKGMG 18.54 12.7469 21.2896 TTNRTTCW 15.72 10.4151 20.7938 CCGNMKCS 8.5 4.68279 20.7922 GCAHRCRS 19.46 13.5837 20.7309 TNCKWATB 15.26 10.0642 20.4063 GGWGRVHG 31.28 24.172 20.2049 ATYGATYR 4.42 1.88594 19.359 AWGCVABS 23.22 17.0592 18.7517 WSCSTRKS 37.04 29.7279 18.6366 YCWCYGWV 36.18 28.9313 18.5408 CWMYGTNR 36.32 29.115 18.1414 ASSSAGGV 24.26 18.0857 17.8042 CGYCGCSB 3.14 1.14769 17.6933 CAWACAAR 9.38 5.543 17.4872 GGHYRGGG 11.64 7.36297 17.0105 AARWRCAA 13.6 8.99063 16.6656 ATBATTAA 3.08 1.14469 16.4715 GHGGKMGG 8.78 5.14305 16.4614 AGWCBWYG 11.54 7.39657 15.4686 AATYATTA 2.36 0.760005 15.4638 WMHTAACY 12.4 8.09949 15.4511 GNCWCYGH 36.66 29.8124 15.3541 HTAACCHB 14.64 9.96972 15.3444 ARKSSAAA 20.72 15.2274 15.2058 CBWATCDV 18.64 13.4118 15.1514 CTRSGHWB 35.86 29.1059 15.003 GBCKTDGB 28.7 22.464 14.8074 CGVRCGGS 3.36 1.38378 14.1198 KGKCMYYG 26.7 20.7236 14.0952 TGSMTDCB 25.86 19.9599 14.0876 TTGCDWCA 7.26 4.12617 14.0615 HCGBTCGV 2.96 1.148 13.7596 CSWVGCTV 22.68 17.2105 13.0831 GGCRGGAV 9.6 6.05486 12.4769 TGWMCCYW 15.98 11.3803 12.4672 ATTKCRWC 5.02 2.56461 12.4549 TNSVDTTC 35.02 28.7041 12.2777 ACDWGGHH 33.92 27.6729 12.2342 GCGMCGMG 1.54 0.402338 12.1267 TTKACWRA 14.82 10.4233 12.0799 DAHGAAAR 15.42 11.0108 11.3472 GCBWAKGR 13.34 9.2453 11.2357 GGHNGAGH 27.5 21.8389 11.1886 KRAGCBAN 29.18 23.4214 10.9846 DRGRMAAG 28.44 22.7494 10.8861 YRTCKHYS 27.16 21.5933 10.698 TTTGWATY 4.76 2.46366 10.6678 HCCWWCCS 12.7 8.75777 10.6658 ACVCWRMS 32.34 26.4291 10.5982 TGGGGNKG 9.4 6.042 10.5051 DRATKTCR 15.22 10.9558 10.2036 GGCSMCGC 2.66 1.0732 10.0802 CRTGCGCR 1.7 0.527266 9.69672 WCCCCVVC 12.04 8.29976 9.60739 TCKWYCYN 28.66 23.1419 9.57585 YRGKTCRB 21.88 16.9817 9.14005 SRCWCAGN 35.12 29.2848 9.13227 AMVCAYAG 15.68 11.476 9.076 CTMACTVN 16.4 12.1218 8.93144 CGNMYCGG 2.82 1.21222 8.89741 TACRCAYD 7.74 4.83695 8.813 RTTYGMAY 9.16 5.98177 8.79726 CKTCCGKN 5.1 2.80888 8.74602 YKCKTBCB 33.86 28.1799 8.56999 TMAYYTYB 31.94 26.3862 8.43993 AGCGYKCG 1.24 0.321869 8.22967 RCCHMGTG 10.38 7.0517 8.04536 WTWCAAAR 11.52 8.02067 7.91623 AWCVSWGM 33.04 27.5319 7.78247 KNGMAAYG 17.78 13.5295 7.35722 CTTBGWTS 10.38 7.12534 7.23703 CTBCSTSK 22.3 17.6444 7.07944 KGKGCGTG 2.82 1.28235 6.93355 GTBCMHGG 16.76 12.676 6.92982 MCGGAMGK 3.14 1.49964 6.87697 WNGRATKR 27.2 22.2378 6.59382 RWCGBTCG 1.26 0.360547 6.53848 TCCWSSYC 18.24 14.0501 6.50211 TDCKGWTK 19.86 15.533 6.32394 RCTCYGDV 30.82 25.7237 6.04668 GGKTCRKD 12.24 8.83127 5.98372 ACRMRCAC 8.72 5.86536 5.88772 DNCKCACB 25.94 21.1779 5.88418 RATMTTTG 6.04 3.70414 5.85331 KTTCWBTK 31.46 26.3662 5.82843 ACATAGHH 5.84 3.55505 5.74458 MGGCKKGS 13.36 9.82982 5.72628 CCTSGRMK 13.68 10.1482 5.38833 TATCTWRK 3.96 2.15029 5.38223 MKCYACCV 12.14 8.82247 5.27156 TRCYMAGV 22.76 18.3549 5.12816 TTAWYTDA 8.44 5.70491 5.08351 GGCSGSCG 1.94 0.781098 5.0709 SRTGGTGS 5.4 3.26322 4.98997 AWGRAAAA 6.36 4.02652 4.89738 GMGBWGGG 10.34 7.31877 4.89674 RCSRATCG 1.4 0.46892 4.86847 WCSGBBCG 4.6 2.66257 4.76885 GHRGNTGG 20.6 16.4301 4.76034 RCWCAGKM 20.22 16.0892 4.72099 TWTRTASW 9.18 6.37811 4.48833 TDCTYTTY 16.02 12.347 4.35891 GAHBTCAY 12.04 8.85019 4.25432 TGTGGACW 4.5 2.62015 4.22056 YWRGAAYB 27.54 22.9804 4.04973 TGCAATSB 5.44 3.36135 4.02155 RGAAYTSR 11.74 8.62501 3.94652 GCTCRCYS 5.68 3.56118 3.87993 TBRCTMAY 15.68 12.109 3.86896 KMCRAMGV 20.04 16.0546 3.8601 TGMMCYGW 13.62 10.311 3.61938 TRGTTHTB 14.12 10.7614 3.55755 AMVYATVC 15.56 12.0843 3.26442 AAWTAAMR 9.06 6.40112 3.23718 TKMGTYAY 7.36 4.97738 3.22682 TTAAAAAW 2.98 1.55989 3.03511 AWTCGWTV 1.96 0.864726 2.91422 AGKYCABC 13.12 9.96165 2.89638 GTCCMCAD 7.36 5.0132 2.83311 TRGRAAAW 10.04 7.28457 2.80447 GSARHGGR 21.34 17.4193 2.79489 TKASACAK 11.28 8.36006 2.78985 KRATKAAR 10.78 7.92741 2.77331 WGCGGYSG 2.5 1.23563 2.72677 ATCGATHY 1.32 0.475919 2.70078 CKTGCKTV 6.08 3.97412 2.6964 TWWKTAAY 9.82 7.12422 2.54402 CGDSASCG 2.36 1.14893 2.49568 RGAAAARH 15.98 12.5768 2.45736 GGWAGSNG 12.38 9.37195 2.40192 GCRGGMMG 7.68 5.3283 2.32416 GCTMAGCD 5.78 3.76188 2.31977 GCCCHSGM 10.22 7.49755 2.29507 AYAAGCDA 4.62 2.84101 2.27278 CGKKACGB 1.74 0.750636 2.1101 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete