Motif finder

Task #3656 - c821dc42

Status Start End Updated Duration Sequences Logs Task Bundle
finished 5 months ago 5 months ago 5 months ago 10 minutes (649sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
TRTWKACH 66.9 15.278 1462.3
RTTKACHY 54.3 19.8811 620.023
TMAAYANS 54.2 25.5296 394.976
TWKACHYW 55.48 27.4976 366.547
TTKRTYTW 30.1 14.2231 171.595
TKAHYTWK 45.7 27.4352 156.764
TRTTKRTY 29.86 15.297 138.613
GRMCTHNG 38.84 22.8441 131.338
RAAYHAAY 30.96 16.6131 127.698
TTRNGHAA 29.44 15.9429 116.15
KACDTWGN 29.76 16.8414 102.623
GGGGHGGG 7.46 1.83092 101.041
GKDCRNAG 37.84 23.7504 99.1676
RAGKYCAN 41.08 26.7791 95.8929
GGGHGGGG 7.2 1.83092 92.8724
TAAHYABW 32.02 19.2925 91.1384
ARMYAAGV 30.3 18.4245 81.3762
TGYGTACH 9.26 3.22413 77.3849
RTWKACHR 34.7 22.5183 75.4536
AGKTCRND 32.52 21.0601 69.1291
TRTWTGCW 14.64 6.9685 68.6188
CCRCCCCB 7.06 2.28213 64.0524
TGNMCTYW 39.34 27.4428 63.8994
ACBTWGNH 40.7 28.794 62.3861
TAYRCARN 21.92 12.8274 60.4079
AAAMAAAR 12.9 6.09438 59.8737
CGSCBBCG 6.0 1.82698 58.3301
VTTNGCTN 40.6 29.2833 55.2631
ATMMAYAN 28.3 18.4069 55.215
WTRTTTGY 18.52 10.5272 53.7204
TCRAYADW 19.1 11.0765 51.9722
GGYGGSGS 7.86 3.21243 46.3146
GTACRCAH 6.28 2.26333 45.8068
TTYGCTYW 12.2 6.20702 45.2093
GCGGNGCG 2.7 0.496032 43.9804
TDCHTAAB 16.14 9.22995 43.7553
TNGCTHWG 24.28 16.1281 39.6417
RRGRCRGR 32.16 23.0062 39.5384
GCGYKCGN 4.18 1.28634 37.0539
CGMRCGCV 3.6 1.00276 36.2411
RSDYRGTG 31.6 22.8117 36.1485
GYMCTNBG 33.54 24.5816 35.8923
AAMYAYBR 35.2 26.1309 35.4701
GGVVRWGG 34.14 25.2542 34.5571
ARYBAATB 20.66 13.6269 32.4147
ACWVAGMW 33.8 25.2164 31.813
TTKTTTTS 10.34 5.49197 31.5625
TNACYMWG 30.28 22.0824 31.3312
AMCTYWGN 34.4 25.8857 30.6254
ANCRAHGV 33.0 24.6605 30.1096
CGBTCGVN 4.54 1.65578 29.7058
CGGHGCGB 2.98 0.815215 29.3246
GTGTACWY 6.14 2.71529 27.7246
YTGYCYTN 37.92 29.5121 27.2145
TTSGYWRN 35.3 27.1251 26.7812
GGGCNGGG 6.84 3.2331 26.4353
MYTMACYN 33.3 25.3867 25.8364
CKTYGGHN 22.78 16.0258 25.3738
TCSCKHCS 9.7 5.34624 25.1379
AKAYVAAY 15.08 9.5626 25.0857
AACAWGVV 25.72 18.6426 24.9527
WRCCBTDG 27.82 20.5344 24.7296
GCGDCSGS 3.54 1.22825 23.6919
CTYRGMMB 33.3 25.7078 22.9786
AAAAAAAT 2.74 0.827021 22.0379
ATTKCDHA 14.32 9.16919 21.9953
TRATTRRY 9.94 5.73906 21.3686
DGGRKGMG 18.54 12.7469 21.2896
TTNRTTCW 15.72 10.4151 20.7938
CCGNMKCS 8.5 4.68279 20.7922
GCAHRCRS 19.46 13.5837 20.7309
TNCKWATB 15.26 10.0642 20.4063
GGWGRVHG 31.28 24.172 20.2049
ATYGATYR 4.42 1.88594 19.359
AWGCVABS 23.22 17.0592 18.7517
WSCSTRKS 37.04 29.7279 18.6366
YCWCYGWV 36.18 28.9313 18.5408
CWMYGTNR 36.32 29.115 18.1414
ASSSAGGV 24.26 18.0857 17.8042
CGYCGCSB 3.14 1.14769 17.6933
CAWACAAR 9.38 5.543 17.4872
GGHYRGGG 11.64 7.36297 17.0105
AARWRCAA 13.6 8.99063 16.6656
ATBATTAA 3.08 1.14469 16.4715
GHGGKMGG 8.78 5.14305 16.4614
AGWCBWYG 11.54 7.39657 15.4686
AATYATTA 2.36 0.760005 15.4638
WMHTAACY 12.4 8.09949 15.4511
GNCWCYGH 36.66 29.8124 15.3541
HTAACCHB 14.64 9.96972 15.3444
ARKSSAAA 20.72 15.2274 15.2058
CBWATCDV 18.64 13.4118 15.1514
CTRSGHWB 35.86 29.1059 15.003
GBCKTDGB 28.7 22.464 14.8074
CGVRCGGS 3.36 1.38378 14.1198
KGKCMYYG 26.7 20.7236 14.0952
TGSMTDCB 25.86 19.9599 14.0876
TTGCDWCA 7.26 4.12617 14.0615
HCGBTCGV 2.96 1.148 13.7596
CSWVGCTV 22.68 17.2105 13.0831
GGCRGGAV 9.6 6.05486 12.4769
TGWMCCYW 15.98 11.3803 12.4672
ATTKCRWC 5.02 2.56461 12.4549
TNSVDTTC 35.02 28.7041 12.2777
ACDWGGHH 33.92 27.6729 12.2342
GCGMCGMG 1.54 0.402338 12.1267
TTKACWRA 14.82 10.4233 12.0799
DAHGAAAR 15.42 11.0108 11.3472
GCBWAKGR 13.34 9.2453 11.2357
GGHNGAGH 27.5 21.8389 11.1886
KRAGCBAN 29.18 23.4214 10.9846
DRGRMAAG 28.44 22.7494 10.8861
YRTCKHYS 27.16 21.5933 10.698
TTTGWATY 4.76 2.46366 10.6678
HCCWWCCS 12.7 8.75777 10.6658
ACVCWRMS 32.34 26.4291 10.5982
TGGGGNKG 9.4 6.042 10.5051
DRATKTCR 15.22 10.9558 10.2036
GGCSMCGC 2.66 1.0732 10.0802
CRTGCGCR 1.7 0.527266 9.69672
WCCCCVVC 12.04 8.29976 9.60739
TCKWYCYN 28.66 23.1419 9.57585
YRGKTCRB 21.88 16.9817 9.14005
SRCWCAGN 35.12 29.2848 9.13227
AMVCAYAG 15.68 11.476 9.076
CTMACTVN 16.4 12.1218 8.93144
CGNMYCGG 2.82 1.21222 8.89741
TACRCAYD 7.74 4.83695 8.813
RTTYGMAY 9.16 5.98177 8.79726
CKTCCGKN 5.1 2.80888 8.74602
YKCKTBCB 33.86 28.1799 8.56999
TMAYYTYB 31.94 26.3862 8.43993
AGCGYKCG 1.24 0.321869 8.22967
RCCHMGTG 10.38 7.0517 8.04536
WTWCAAAR 11.52 8.02067 7.91623
AWCVSWGM 33.04 27.5319 7.78247
KNGMAAYG 17.78 13.5295 7.35722
CTTBGWTS 10.38 7.12534 7.23703
CTBCSTSK 22.3 17.6444 7.07944
KGKGCGTG 2.82 1.28235 6.93355
GTBCMHGG 16.76 12.676 6.92982
MCGGAMGK 3.14 1.49964 6.87697
WNGRATKR 27.2 22.2378 6.59382
RWCGBTCG 1.26 0.360547 6.53848
TCCWSSYC 18.24 14.0501 6.50211
TDCKGWTK 19.86 15.533 6.32394
RCTCYGDV 30.82 25.7237 6.04668
GGKTCRKD 12.24 8.83127 5.98372
ACRMRCAC 8.72 5.86536 5.88772
DNCKCACB 25.94 21.1779 5.88418
RATMTTTG 6.04 3.70414 5.85331
KTTCWBTK 31.46 26.3662 5.82843
ACATAGHH 5.84 3.55505 5.74458
MGGCKKGS 13.36 9.82982 5.72628
CCTSGRMK 13.68 10.1482 5.38833
TATCTWRK 3.96 2.15029 5.38223
MKCYACCV 12.14 8.82247 5.27156
TRCYMAGV 22.76 18.3549 5.12816
TTAWYTDA 8.44 5.70491 5.08351
GGCSGSCG 1.94 0.781098 5.0709
SRTGGTGS 5.4 3.26322 4.98997
AWGRAAAA 6.36 4.02652 4.89738
GMGBWGGG 10.34 7.31877 4.89674
RCSRATCG 1.4 0.46892 4.86847
WCSGBBCG 4.6 2.66257 4.76885
GHRGNTGG 20.6 16.4301 4.76034
RCWCAGKM 20.22 16.0892 4.72099
TWTRTASW 9.18 6.37811 4.48833
TDCTYTTY 16.02 12.347 4.35891
GAHBTCAY 12.04 8.85019 4.25432
TGTGGACW 4.5 2.62015 4.22056
YWRGAAYB 27.54 22.9804 4.04973
TGCAATSB 5.44 3.36135 4.02155
RGAAYTSR 11.74 8.62501 3.94652
GCTCRCYS 5.68 3.56118 3.87993
TBRCTMAY 15.68 12.109 3.86896
KMCRAMGV 20.04 16.0546 3.8601
TGMMCYGW 13.62 10.311 3.61938
TRGTTHTB 14.12 10.7614 3.55755
AMVYATVC 15.56 12.0843 3.26442
AAWTAAMR 9.06 6.40112 3.23718
TKMGTYAY 7.36 4.97738 3.22682
TTAAAAAW 2.98 1.55989 3.03511
AWTCGWTV 1.96 0.864726 2.91422
AGKYCABC 13.12 9.96165 2.89638
GTCCMCAD 7.36 5.0132 2.83311
TRGRAAAW 10.04 7.28457 2.80447
GSARHGGR 21.34 17.4193 2.79489
TKASACAK 11.28 8.36006 2.78985
KRATKAAR 10.78 7.92741 2.77331
WGCGGYSG 2.5 1.23563 2.72677
ATCGATHY 1.32 0.475919 2.70078
CKTGCKTV 6.08 3.97412 2.6964
TWWKTAAY 9.82 7.12422 2.54402
CGDSASCG 2.36 1.14893 2.49568
RGAAAARH 15.98 12.5768 2.45736
GGWAGSNG 12.38 9.37195 2.40192
GCRGGMMG 7.68 5.3283 2.32416
GCTMAGCD 5.78 3.76188 2.31977
GCCCHSGM 10.22 7.49755 2.29507
AYAAGCDA 4.62 2.84101 2.27278
CGKKACGB 1.74 0.750636 2.1101

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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