Task #3338 - 08ec98f0 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 4 hours (17547sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TRTTKACH 46.6707 9.28691 2342.11 GTMAAYAN 47.4649 9.97971 2277.64 RTTKACHN 57.4919 26.3049 1075.2 TAAAYANN 50.6414 23.0933 891.565 TTKACHYW 40.9634 19.4397 608.327 ARYAAAYA 22.6634 8.57211 454.39 AAAYAARN 38.5287 20.2671 438.144 TKACYYWD 44.6898 27.8336 322.976 ATMAAYAN 21.8344 10.1626 291.675 TTTRTTTK 18.1517 7.73823 284.366 RCAAAYAN 29.2958 16.2895 263.618 GRGGHRGG 19.4083 9.21236 243.726 KACYTWGN 25.4996 13.9209 234.281 GGGHSGGG 8.45624 2.55283 221.2 RAGKYCAN 37.4029 24.3706 210.312 TCAAYANN 33.3973 21.1123 203.261 GNMCTTYG 15.8478 7.47012 197.721 TTGHTTTN 24.7229 14.8822 166.288 RGKCRDVG 34.5842 23.2856 163.859 RAKCRAWS 20.4381 11.5455 163.397 AGGTCABN 15.9176 8.13883 163.109 GGHAGNRR 40.9722 29.2959 155.884 ACTTDGNH 32.2018 21.4781 155.66 GSRGGHRG 24.6618 15.231 151.337 WTYGMTYW 23.571 14.4163 148.478 TGRMCTYN 34.6016 23.9976 142.803 KTACRYAD 16.3889 8.95614 140.469 ACRCRCAC 6.34436 2.25782 128.962 TRWTGATY 8.25552 3.51984 122.304 AAAYAYBR 25.36 16.9074 115.242 TACRYAVN 25.2727 16.8677 114.205 RSSSASGM 31.1458 21.9965 113.669 CTKGGMWN 38.0923 28.3114 112.733 AKBCCAGS 19.8883 12.5295 108.983 CGCSBSCG 2.09442 0.334075 106.091 YTKVCTTS 27.8209 19.3877 105.179 TGYGYGYG 7.69701 3.4808 100.658 AABRAARM 32.8825 24.0886 100.111 RGSAAGNR 31.2942 22.6614 100.076 CAAAYAHB 22.9252 15.3864 99.0457 GGYGGSGS 6.71961 2.91118 95.7864 CBDYCYCK 35.6314 26.8595 93.9865 RSSYTGGS 31.94 23.5321 93.1559 AAWRAKWA 20.6912 13.8064 90.0695 AMAYMGHR 33.886 25.5881 86.7415 CCAGCMYB 18.7015 12.2686 86.2603 AWKAYNAA 23.5535 16.409 85.8222 TGYGTACH 6.92905 3.24256 83.7622 SCTKGCTB 19.6701 13.2198 82.2603 TTKACHRA 15.4638 9.84129 78.8704 RGNAGSCR 25.8312 18.7 78.5182 GSADMGRB 35.7885 27.773 77.8176 DRSAAAKG 31.0062 23.4049 77.2038 TTATYTWR 9.69544 5.42266 74.5054 TCKVYYTC 19.2425 13.1924 73.1648 AGKTCRAR 7.77555 4.03856 73.0451 DGCTGGSH 28.6151 21.4488 72.7401 CGBKCGSS 2.72275 0.801729 72.4895 TAAYCCYA 4.67755 1.94579 71.8911 TRSCTYHG 22.803 16.3373 71.4406 TRTTTRTM 11.1528 6.63897 70.7244 CAGCVTSS 13.1338 8.23914 69.7612 AACWWGVM 23.9113 17.4515 68.2529 KDMCRAAG 18.5531 12.8323 67.27 GRMCTCDG 14.3468 9.30672 67.2558 DCBTCSYR 27.5679 20.7767 67.0387 HRRTGACB 18.6316 12.9563 65.8361 TYDCKRTK 29.4354 22.5653 65.1687 DWGCTRGG 14.3904 9.42854 64.7374 RTTKATTS 8.09844 4.46073 64.6698 GDCRKVGY 27.2275 20.5819 64.232 ATNAANTA 10.8823 6.63843 63.2722 ABWRAGMA 29.5488 22.7917 62.7956 TCBVTCCY 15.4115 10.348 62.7487 MAGRGMAR 28.3445 21.7275 62.1226 GWSGGHRG 15.7344 10.6813 61.08 GCGCGBSS 1.8588 0.474579 59.4466 TBMYYWTC 35.2561 28.307 58.7851 ADMRATSA 19.068 13.6507 58.2197 GSGWSGWG 8.95366 5.26689 58.1042 CGCGBCGN 1.02103 0.145248 57.1295 GNASYTRG 23.7804 17.8758 56.8118 CCYYRGCN 26.1541 20.0527 56.0792 AATVRAHT 14.4515 9.81137 55.6113 WCCCSMSC 10.1143 6.34743 52.778 TTKMTTMW 18.78 13.6757 52.0937 RABKAHMG 27.0006 21.092 51.173 TRTTTGCM 7.23449 4.15642 50.6768 GCGVCSGS 1.90243 0.563609 50.5635 CRCVCACS 6.65852 3.72486 50.2191 YRSGTCAB 12.1564 8.11647 49.7634 MRGGYAGV 22.0002 16.6478 49.6372 GTCAYYDN 27.2799 21.4055 49.6025 AAAGRAAA 7.41775 4.34399 48.8891 CACSCSCV 6.23091 3.45894 48.3667 CTKGCTVB 21.5813 16.3428 48.3012 GTTCVAGG 4.11031 1.96026 47.3647 ACCMCCAC 3.49943 1.55786 46.9673 YGMCYBGS 21.0577 15.9447 46.9647 KACYCDGB 23.6408 18.2825 46.7343 RGMSGGMG 8.36024 5.16258 46.0093 AMRTACAC 4.70373 2.40593 45.6946 WGSMAAGM 21.206 16.1555 45.5001 CWCKGTVV 26.9657 21.4532 44.4998 KGWARTCV 14.0239 9.93535 43.734 GTGYGTAY 3.75251 1.78422 43.5777 AGMCYTKG 12.3309 8.50512 43.527 TWTYWTTM 20.5864 15.7104 43.4655 TKCYAGGH 14.5737 10.4715 42.3231 RVTGACKH 15.8216 11.5598 42.2051 AGRKMGRG 13.1251 9.21342 42.2 AMCTTYGD 9.86997 6.51387 42.038 TGGSRDVG 25.7701 20.6543 39.6677 TSKRTTYG 12.1389 8.50608 39.6299 AAAHGAAA 6.57125 3.96642 39.0602 ATGSAAWB 11.0655 7.62466 39.0183 YTGGCADS 16.1358 12.0103 38.6852 GRGWBASG 16.0485 11.9429 38.5037 AKABAAAY 13.7359 9.93483 38.3079 HCGCGCSS 1.18684 0.303436 38.2518 AGGSTBAG 9.50345 6.36436 37.9488 GACYWGGM 7.62719 4.84673 37.6267 RSCTTSCB 18.3262 14.0449 37.0127 ATMDTTRA 8.06353 5.25106 36.1181 TTRKGMAA 11.5455 8.15522 36.109 AAATAAYN 8.5086 5.62285 35.885 MCWCGKGV 7.53992 4.84903 35.4869 GSVTKYGK 28.0653 23.0963 35.1228 GAMVTCAY 8.87512 5.9554 35.0684 AGHAGMKR 20.8482 16.4576 34.7355 CSWCCACS 4.51174 2.51972 34.4279 ACDAAMYA 10.603 7.4299 34.3947 TYCDTTCC 6.35308 3.94486 34.1458 TCMKCSTC 5.85566 3.55845 33.9967 AAGYMRRA 16.4936 12.5952 33.7227 GNTGGBAG 12.7149 9.28271 33.5 WTCSATTC 2.82747 1.34012 33.2481 TGASRYMG 10.4547 7.3608 33.1033 GTGYGYGS 6.15237 3.82823 32.8169 TKCCYAGB 13.7883 10.267 32.5564 AAATAKHT 7.19085 4.67478 32.3976 GGTTRGGG 2.5744 1.18505 32.3716 BTCSTSGV 17.2092 13.2824 32.3189 AYMGDRAG 16.6507 12.8418 31.8851 GSTCRGYV 13.3345 9.91018 31.7784 CTWYGTWG 5.55895 3.3939 31.765 GGGATTAM 2.11188 0.898507 31.391 AMYACVSA 18.5095 14.5467 31.3713 RSYACGTG 2.69657 1.28852 31.1703 ARATSAWS 12.8894 9.55393 31.1454 GCADGCRY 7.15595 4.68146 30.9841 CTCGGSNN 7.96754 5.36735 30.8932 AAACCAAM 4.32848 2.473 30.8649 GVMGHMGG 14.5912 11.0684 30.8306 GCTGAGGY 3.91832 2.16788 30.8107 AWTTADWA 10.5419 7.55029 30.5773 RCRCRCRK 13.0727 9.74665 29.9839 GGGGWYGG 3.08055 1.58633 29.6194 WCNTRACC 9.45981 6.67419 29.5648 TGTACTTW 2.74893 1.35727 29.4228 CCTYCCDD 17.0783 13.3767 29.4127 GGRGGGGG 3.40344 1.82804 29.1921 CWRGVACK 16.4849 12.8586 29.1493 ATTWTYWT 11.2488 8.23637 28.9928 TCATTDVC 7.49629 5.06391 28.7037 CSGRKCGN 2.51331 1.20988 28.6281 GVGATGGS 4.64264 2.78392 28.3025 TRSKVWTG 26.7214 22.3002 28.2843 AABWACDA 10.8561 7.94408 28.0432 WTCSTCCY 6.28327 4.10733 27.6952 CSGCGDCS 1.08212 0.334234 27.6324 TGAYGHMA 7.70573 5.28396 27.5708 TAHTTAAM 5.41932 3.42186 27.4163 AVAKGGMA 17.4972 13.8858 27.4044 TTAVAAAW 10.9346 8.04625 27.3749 CADKGCTR 14.3992 11.1083 27.2092 ARCCRAHS 13.0901 9.94865 27.1474 CTRCTKRS 15.0973 11.7398 27.0959 CGMRCGHS 1.71045 0.708406 26.7344 CCAGGMMN 21.4155 17.526 26.7252 ACCCTAAC 1.27411 0.44974 26.6515 GYWCYSGG 8.38642 5.89744 26.6077 ASCGMSCG 1.04721 0.326261 26.4644 GAYMGAKR 8.24679 5.78957 26.38 TKACATTB 7.28685 5.00275 25.9326 WAKGCAAR 8.60459 6.11628 25.8669 AWKRATGA 6.26582 4.16124 25.8637 AKVAATGB 15.8391 12.4957 25.7148 ACRCRWAC 4.44192 2.71394 25.4275 TKRCTRAK 14.0763 10.9374 25.2886 KAGAKMAR 16.1707 12.8287 25.2195 ASWACRAA 7.32176 5.06327 25.1913 RKGACTYD 17.3052 13.8624 25.1817 CGKCCSGS 1.14321 0.391444 25.1596 RWAATGAD 11.2052 8.40622 25.0518 GCCAAGNR 8.62204 6.1737 24.9608 MGASYAGS 10.4547 7.76046 24.8609 AYMGYARM 16.2754 12.9575 24.7208 GCMCGSCB 3.51689 2.02621 24.5844 GTGBGGTG 4.10158 2.47605 24.5283 AAAGVAAG 6.23091 4.18623 24.4785 AATRAATS 4.03177 2.42563 24.4031 DYCRAAGS 15.0275 11.8177 24.272 AACCCTAA 1.50973 0.62131 24.2075 GAAATGBM 6.84178 4.70567 24.1634 RCCSMGKG 8.81403 6.3837 24.0206 AGTYMATS 6.3269 4.28388 24.0168 AWNATMGW 10.5681 7.90706 23.9838 TGCKWTSV 11.7724 8.96717 23.9706 KMTCKYTG 13.3781 10.4083 23.7628 GGHAGVTV 19.0505 15.5667 23.7467 CAMCATSV 10.1405 7.54998 23.6804 ASYTRCYD 30.3081 26.1998 23.1418 AAACRYAS 9.00602 6.59826 23.0461 ATTKCMHA 12.6014 9.75983 23.037 AAGCAAAT 1.9548 0.932781 22.948 TTGGTTTB 5.42805 3.58945 22.8837 ACWAGYMA 7.14722 5.03219 22.5638 AAYRAMCC 6.44035 4.43881 22.5534 TTYGAGAC 2.24278 1.14868 22.1341 TATGTABH 5.4455 3.63305 22.1182 GSASGDGM 15.6733 12.6052 21.9353 CSYGGBAS 11.3884 8.71513 21.9012 TCRAACTC 1.9897 0.976396 21.8937 GAYTTCND 14.7919 11.8478 21.3122 KGTTGTTK 7.33921 5.26434 21.0874 CGCWYCSG 1.07339 0.396674 21.0551 AGHAGGDA 9.46854 7.10803 21.047 ACRNMGAY 12.4095 9.74268 20.6285 RCWCKGTR 13.989 11.1382 20.4127 GSWAGGRY 10.123 7.7359 20.1486 ACTGARCY 5.5415 3.79199 20.1415 WSCSGYCG 1.52718 0.694493 20.1413 WCCCAHCC 5.61131 3.85394 20.0495 RGRKCGCG 1.03849 0.389594 19.9165 GGCHCSGS 4.04049 2.57826 19.8374 WTTARAAW 11.6502 9.11658 19.8009 CRCCACCR 2.99328 1.76006 19.7774 CAKGCWWG 8.6395 6.47068 19.4887 MCGTGVYB 8.0199 5.90392 19.4577 KGCTDCTG 9.1282 6.90211 19.428 DACTYACK 5.8033 4.04221 19.4071 ATTAMMSR 9.28528 7.04197 19.3966 TRRAMTAK 10.1754 7.83305 19.3159 AGTCCAMR 4.89572 3.29247 19.2981 AAAAAAAA 7.23449 5.23781 19.2727 DGCATKYG 8.23807 6.13379 19.2527 ATMGATAH 1.90243 0.968166 19.2421 CGCGGDSS 1.28283 0.549745 19.2295 ACCRHMCC 6.26582 4.44273 19.1742 GCYACCRY 4.39829 2.89603 19.0269 GAAGRKMG 4.98298 3.37549 19.0236 CRCGTGWS 2.38241 1.32241 18.937 GGDSACMG 10.5245 8.17237 18.8553 CKMTGCTN 10.7601 8.38315 18.8454 AARTTAAW 5.04407 3.43767 18.7405 DGCGCGGS 1.06467 0.422837 18.5292 TGGYAGSA 5.29715 3.65823 18.5026 ATGYACAC 2.67912 1.55666 18.4866 GAKRAMGH 12.5753 9.99674 18.4535 YAGCAAMS 7.42648 5.47403 18.4295 ATKAATMA 3.15909 1.93055 18.3416 AGSCKGGW 8.61332 6.5187 18.2495 ARCMYTGM 17.1132 14.219 18.2158 KRACKATK 5.20988 3.59806 18.2096 ATVKAATA 3.2289 1.99132 18.1455 GCKGGGRC 3.63906 2.32154 17.9818 AATAYNAT 4.38084 2.92366 17.9356 TAACCTTD 3.06309 1.86944 17.8961 AAMSCCAR 10.699 8.39427 17.8489 AKCACTTG 2.53949 1.46922 17.812 AGGAYDRC 8.80531 6.71354 17.8116 CCSACSCD 4.60773 3.09685 17.7988 TYGRYTVS 18.0644 15.1393 17.7874 RCCTTGAM 4.01431 2.63085 17.7809 YGAGTTCS 2.15551 1.18547 17.6897 AVTCAGNA 12.9418 10.4501 17.4275 CAGGMCMG 5.99529 4.30277 17.2945 GBCCTTGR 6.3269 4.58899 17.2378 GTTCRAAK 2.89729 1.76484 17.0973 GTARACBD 7.793 5.88454 16.7895 AGADAVKA 15.5162 12.8659 16.7514 CTAGGMWD 8.14207 6.19517 16.719 GGGTAGRG 1.78899 0.941502 16.7075 TCCNTCTC 4.50301 3.07537 16.6762 KGGAATSG 2.94092 1.81211 16.6753 GTSGGGGR 3.25508 2.06362 16.5745 WGTARACB 7.41775 5.5717 16.5227 TCGVYSGC 1.4661 0.718748 16.4671 WCCCRRMG 8.45624 6.48765 16.4652 GRHGATGG 3.74378 2.46994 16.2169 AGGMARAY 10.4721 8.30649 16.1636 AACYYAGR 8.6395 6.66907 16.1588 DMGCSWCG 2.66166 1.61067 16.1469 GGGGTGYG 2.22533 1.27892 16.0656 AYCTWRTY 9.36382 7.32455 15.9913 KAGACSRG 3.73506 2.47224 15.9706 GKCBACMG 6.77197 5.04111 15.9556 AGACMGRR 8.51732 6.58447 15.7862 CAARYAGS 9.88742 7.80764 15.7822 GRMTGRAG 8.56968 6.63318 15.7511 TACRYATN 6.50144 4.7911 15.6881 AWNAGGAA 10.2976 8.18736 15.6286 CGCGCWKS 1.13448 0.510054 15.61 GMGCGMGS 1.501 0.76279 15.477 TGGAACTC 1.71917 0.919666 15.4384 AWATATAM 3.01946 1.91595 15.4056 DGCRCWCG 2.61803 1.5879 15.3886 KACKTTWV 10.8299 8.69157 15.3094 GRAGAAMG 3.91832 2.65128 15.2438 TTRYTTGR 8.99729 7.05666 15.1071 CGDCKBCG 1.04721 0.461556 15.0742 TSCMCGYS 4.10158 2.81159 15.0364 GCTKCYGS 7.31303 5.56902 15.0097 ACGTGRDA 1.96352 1.11089 14.9798 RGCSAKMG 7.62719 5.81171 14.9738 ATBKCDTC 8.25552 6.40468 14.9703 TTTRWTYC 9.54708 7.56167 14.9307 TAGHRAKA 6.97269 5.28271 14.8007 AGMAGCAG 4.11903 2.84181 14.6711 CTKGGKAS 7.77555 6.00316 14.5939 AARGTTAA 2.72275 1.70823 14.5813 ACACCMCC 2.97583 1.91387 14.465 TGRTTTYG 4.18885 2.91252 14.3887 TGACCTGW 3.06309 1.99213 14.2419 CTRCKRTB 12.4793 10.2928 14.101 CAWCMCCS 4.97426 3.59246 14.0566 ACCCRMAC 3.14164 2.06337 14.0345 GATGGCKC 1.501 0.796073 13.931 TGWCCCCR 3.56925 2.4179 13.9163 TTCAKTVA 6.57125 4.98402 13.9078 GGGTCASH 5.55895 4.10995 13.7723 AHAYRCAA 11.9033 9.79415 13.744 AGCABVGY 12.9418 10.7526 13.7082 YCCSASGV 11.5019 9.43339 13.6582 AAACTGAA 2.35623 1.44994 13.6497 MCGCSGGS 1.02103 0.46759 13.6489 TKGCTKGC 5.34951 3.93876 13.5929 GGMKGGAM 7.26067 5.61181 13.5858 TAGCMWGS 6.34436 4.80737 13.5361 TATYGATR 1.4661 0.781029 13.481 CMAKCGAK 1.85007 1.06606 13.4507 TKTCVTCK 7.71446 6.02494 13.4348 AYTCAYTM 5.95165 4.47675 13.3187 TAYGYGYG 2.46967 1.55022 13.3125 WATAATAK 2.35623 1.46754 13.1028 GGKTCAWG 3.3249 2.25294 13.029 CACSGCSS 1.54464 0.849808 12.9951 TTGCTTAS 1.91989 1.13254 12.9687 TKACYBAC 6.89414 5.32811 12.9524 AKGGCAAR 5.35823 3.98333 12.9183 GGGCTASR 2.85365 1.87737 12.7725 TATTTKRA 4.70373 3.43102 12.6895 ATSACBRT 4.93062 3.62766 12.662 GCWCWBGC 9.63435 7.81035 12.6615 GSAAAYGB 7.64465 6.01651 12.6488 CAAGGTHS 4.34593 3.13109 12.5701 AWTAKATA 2.18169 1.3478 12.5619 WAGTCCYR 5.41932 4.05865 12.5259 GKCRCATG 2.79256 1.83816 12.499 AAATGAKA 2.66166 1.73303 12.4761 CRCGCCTB 2.07697 1.26867 12.4739 GWASYTGM 10.3238 8.45633 12.4462 GTCSTCWK 5.30587 3.96578 12.4244 GAYCKTTM 3.64779 2.55036 12.3649 GASGDGMG 6.03019 4.60649 12.3051 GAAGGMKG 4.18012 3.00896 12.1875 AAAYMGGA 4.15394 2.99275 12.066 GMKCYTGG 7.89772 6.28847 12.0214 AAWCATBY 12.1564 10.1802 12.0149 ATGTARYY 5.14006 3.85416 11.8565 AGTTGRCA 2.77511 1.84902 11.8504 ASCTCGGS 1.37883 0.755812 11.8415 CGTGSYCD 3.04564 2.07244 11.8248 TCGAKRCM 1.48355 0.833823 11.8221 WKATTAAC 2.8362 1.90032 11.8177 TGAGCYAY 4.61646 3.40446 11.7804 AGBASKAG 7.87154 6.28305 11.7762 GCGSWDCG 1.00358 0.489413 11.7717 TCRKAGWH 11.1179 9.24716 11.7318 TCMCTKGS 9.05838 7.36123 11.7289 AGARATAA 2.90601 1.96157 11.7213 AGCSBCGS 2.42604 1.55554 11.7145 GAACRAAY 3.07182 2.09944 11.6985 GGMKSMCG 3.61288 2.55214 11.6924 CTBCSCGR 2.7053 1.79943 11.6611 GAAAYCSK 3.93577 2.83585 11.4884 TAAATKAW 3.42962 2.40985 11.4349 AACTGAAM 3.31617 2.31523 11.4214 CTRGAATN 6.99014 5.51763 11.4179 AGMAAYMS 13.7534 11.7306 11.3476 WTCACGTK 1.34392 0.74501 11.2316 ATWCSATS 2.9671 2.03496 11.175 TCVTCTGH 8.64822 7.03913 11.1 CCACCATS 2.19042 1.40676 11.0194 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 11 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 2 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 0 Maximum score in the contrast set of sequences 0 Unsupported param 0 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 0 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete