Task #3388 - 430aded7 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 18 minutes (1121sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) GGGHGGRG 15.4578 5.33185 300.55 TGCSAASN 31.3817 16.3859 297.882 STTGGCWN 47.3153 29.8771 291.599 TTSGCANN 44.0334 28.0231 252.665 GGGGHGGR 13.0207 4.47809 249.495 DCKWCCTB 42.9556 27.6602 232.004 AGKWMGHV 44.1208 28.7828 229.139 CKWMCTBS 40.5282 25.8072 222.24 ANVABGAA 43.9363 29.3361 205.767 GCCWAGDN 40.2272 26.367 194.887 CCDCCCCS 8.80668 2.75017 188.466 GGYGGGGN 9.79707 4.12512 125.254 AAWDMAAA 14.8849 7.79246 118.44 TWCNTRGA 16.5744 9.16452 113.991 GGWMGDRR 40.2563 29.4459 110.9 ADCMAMGN 35.9549 25.8332 103.613 TVGCWMNG 38.4989 28.2064 102.266 TYGRMTYN 31.9254 22.3369 101.03 RDWCAAWG 20.0893 12.3592 98.7141 TTRCDYAA 7.83571 3.38118 92.1823 WVMGKWMG 35.3529 25.8087 91.6376 WCBVTSCC 32.3818 23.2208 89.6142 CGCCSCSB 4.48587 1.42492 87.4931 GVMCTKRG 34.314 25.0614 87.3216 TTRWTYDY 24.3713 16.5185 82.001 GHSCSMSG 26.2841 18.1871 81.527 AWDNAAAY 30.3913 21.9816 77.4641 TWCYMVGA 22.4197 15.1499 74.4191 SCSTSSGS 21.2836 14.1897 74.346 ASGDMSGR 23.2353 15.9207 72.5898 CHCKGCCN 32.3138 24.0214 70.9266 GWGGGHGG 10.2049 5.49515 69.3878 CSKWCCYB 28.527 21.0029 62.8857 RCTCVGHB 28.2163 20.7518 62.334 CBSCCTCS 12.7974 7.72145 60.6791 WTTRHWTM 19.5067 13.2383 60.3907 KTWCNTDG 34.382 26.537 59.0047 TGDMYTYR 34.1975 26.4565 57.3894 RRSTCMGH 31.7895 24.2535 57.1689 WCARWGMM 34.4985 26.7653 56.8514 TGCMMGSH 35.5666 27.9074 54.2503 CKBCCCYV 33.3236 25.8698 53.4893 CGCRNBCG 3.20419 1.08741 53.2865 ADBAAAYR 27.7891 20.847 52.9408 CKRGCWCN 33.3916 26.044 51.5659 WGGGGHGG 9.84562 5.71049 51.163 GARRYGRR 23.7596 17.4151 49.683 AYRVAYRC 19.0892 13.3454 49.5613 BYATKGTN 22.342 16.2743 47.4757 GGGYGYGG 4.214 1.78254 46.8395 ANCKWMCK 20.6428 14.8314 46.534 AABNMGGA 22.1672 16.1715 46.458 VYGAMTYV 24.1771 17.9761 46.0095 GCVCVGHG 17.9726 12.565 45.6226 AAWCMRWA 10.836 6.71767 43.7615 GGWGGWGG 8.8261 5.16547 43.0478 YHCKWMCS 28.5853 22.1619 42.4207 CCTMMGGS 10.0107 6.11164 42.3191 TGAMYBAN 22.8372 17.0217 41.5372 RKWCRGWB 36.0229 29.1339 41.4555 DRYGAMTB 26.0317 19.909 41.2079 GGGNNTGG 22.3031 16.6369 39.8709 GHNCTMRG 29.8476 23.5366 38.9369 GDWMGCWR 26.5851 20.5862 38.2666 AAWNKAAA 13.7198 9.28722 38.201 WGTGKDTR 19.8272 14.5441 38.0506 GGCSSCGS 3.913 1.75497 36.9193 CACSCCCV 4.75774 2.32763 36.853 CKRCCMGS 19.9146 14.6857 36.828 AGAAHHMA 20.4389 15.2166 35.5807 CVGAGBCB 22.5653 17.1245 35.3665 GCCAACHN 21.5458 16.2175 35.2802 CCTKAGGS 8.04933 4.84866 33.8243 TGGYMGVW 26.3909 20.7269 33.1828 WCMHCCAC 10.1078 6.54337 32.3029 TSWCCMYD 33.5761 27.4852 32.0225 TWTTKWTM 10.0592 6.5619 30.7983 GCTHTGHV 26.6434 21.1329 30.5377 CCAMGDNK 35.8579 29.8296 29.563 AMYYACWN 31.2069 25.4502 29.4103 GCGRCSGM 1.69919 0.526984 28.8085 CSYSGADB 28.5853 23.0526 28.7424 TRCDYAAY 8.56394 5.43241 28.666 WCKWMCSY 18.1571 13.5961 28.4581 RTCRCRTG 3.77707 1.84277 27.5824 RKGGWBMG 23.2935 18.2643 27.5784 GWSCMMGM 27.624 22.3017 26.7732 KACRRABR 20.3612 15.6937 26.2842 RTGACSTM 4.29168 2.23465 26.2347 DAWKCAAS 13.5547 9.71641 25.8926 TCKSYCTC 10.0398 6.75445 25.6824 AWKCAABH 17.6425 13.3028 25.6637 GGADAYRR 20.4874 15.8604 25.4505 GYGGGGHG 4.79658 2.62174 25.4119 GCSGMGCG 1.19429 0.304276 25.3205 ACAAWRGV 13.7392 9.94725 24.5039 CYCCRCCK 5.89378 3.48664 24.0732 GKWMGWYR 17.3512 13.1653 23.6402 TTWGGCWH 15.419 11.4632 23.5521 CCKGHCYS 23.8567 19.0672 23.3903 DGMCCTGR 22.7012 18.0218 23.1991 TWGYTTTR 6.91329 4.3212 22.9479 AASWNAAA 16.4676 12.427 22.8834 RSCAWKCR 20.2641 15.8297 22.8358 GKWMGHRY 27.9153 22.8731 22.7684 TSGYAHSH 35.1296 29.7005 22.6022 TGCSAAWN 17.2541 13.1511 22.462 CSRSGCYK 19.798 15.4339 22.4532 KGCGMNCG 2.54394 1.12424 21.8232 ATYGWWYK 7.02981 4.45957 21.6877 GCADAGVB 28.4494 23.4646 21.6013 ABAKSDAA 25.9443 21.1748 20.9975 TTCTGRGA 6.23361 3.88323 20.1057 TGACGWMA 1.76716 0.66837 19.8928 AVRKACAW 16.1181 12.322 19.5417 GGCVGWSG 9.88445 6.90819 19.4022 STCCMTDB 29.3815 24.5383 19.1983 ATCKGATN 2.85465 1.38413 19.0847 GKCHCCAB 21.5458 17.276 18.8743 KCKRCCMG 16.5453 12.7719 18.4772 GGSYGGGH 14.1567 10.6593 18.329 GSGHTGSG 7.9231 5.33063 18.0636 ASGTCAYB 6.95213 4.53637 18.0462 GCAHDCRC 9.66113 6.80815 17.5755 TCMSTNTS 26.187 21.7018 17.2763 TGGRYSGD 10.0592 7.17085 17.0941 GGCMGSWD 31.4594 26.6928 17.0632 CKTGGMCB 10.6709 7.70256 16.9402 GAWGBWGR 27.925 23.3842 16.6749 AAWYSAGW 10.535 7.6269 16.1693 TKATBTHA 8.20468 5.6561 16.0221 TTAGHAWH 6.93271 4.61706 15.6903 ADCSCMGM 15.1762 11.7396 15.5736 GCGMGCGH 1.17487 0.384349 15.3608 AWVRAAAG 14.5742 11.2564 14.7574 AMWTARYW 12.0109 8.98946 14.7459 RAKCSSAG 11.9817 8.96845 14.6709 TADRTANS 9.75823 7.05357 14.4176 WCSRSGYC 11.7681 8.81448 14.1197 DGARYTGR 28.9446 24.615 13.7373 TGKAKVYR 26.488 22.3044 13.6286 AWCCRRWY 11.506 8.63944 13.2174 CGCRVCGR 1.51471 0.610539 13.1683 HVRTGACS 12.6517 9.66523 12.962 TGGMYKCY 26.7113 22.5783 12.9442 KTYGWWTG 5.90349 3.89437 12.8525 WSSCTKAG 18.9824 15.3917 12.8274 WCSYSGWS 20.8564 17.1287 12.704 TCKWWCTY 8.04933 5.69337 12.5507 AAWKMGAA 5.20439 3.35084 12.3 GCSSCGGG 2.12642 1.02671 12.2121 AKTWSMTV 25.8763 21.8662 12.1482 ACYAYGTR 3.02942 1.68075 11.8099 GCCWMGCY 10.9234 8.21553 11.8008 TAGAAWYN 7.80658 5.53079 11.701 GMSCKRRC 19.3902 15.867 11.607 AKCSARCN 25.8472 21.9086 11.4144 TGYADHTC 11.6905 8.91829 11.3665 RRCTMNGG 24.8859 21.0208 11.232 GGTGGWKH 8.09787 5.80493 11.1894 TCAWTYDH 13.914 10.9125 11.1817 TGAKHDAY 13.6906 10.7295 10.9379 RAGKYCAR 21.2059 17.6195 10.7879 TWWCBWTM 16.3997 13.2025 10.6533 GGKMGGYG 4.15574 2.581 10.5647 TTCARTTY 3.74794 2.26564 10.4718 AWWMGYAW 7.65123 5.47353 10.2564 TRTKCWTW 10.001 7.50989 10.1426 WSCKGMCY 28.7601 24.8108 10.0083 ATMDAHTM 6.96184 4.90439 9.9603 GMAKVCRG 27.7114 23.8185 9.9571 GGAKSGRH 14.8364 11.8501 9.77097 RDWCAASG 12.7974 10.0144 9.73825 RBSCTTTG 13.8946 11.0051 9.68083 CARGGCYK 15.885 12.8196 9.57254 GSTGDGYG 11.8555 9.18847 9.51944 CRTGGTNB 8.79697 6.50693 9.38122 GHCGBYCG 1.89339 0.93385 8.99239 GWKCTGRG 13.3411 10.5648 8.89674 TCCTSTTB 15.4287 12.4659 8.79925 GSTRTGGK 7.23371 5.20364 8.6397 GTCRCYKS 9.55433 7.2127 8.63692 KTGGHYGS 19.565 16.3221 8.28468 AVBACWSA 28.4105 24.6755 8.15981 RCRCAMWG 14.7878 11.9387 8.09872 TTTMRHAA 7.05894 5.09353 7.91631 CGDRAKCG 1.48558 0.682954 7.70337 GAGKAGGR 7.46674 5.45521 7.69831 ACATKGTN 5.12671 3.48314 7.61684 GGHTGGRG 9.87475 7.56977 7.48416 KAMKAAAN 16.1957 13.2977 7.27188 TGGVTCNC 12.7197 10.1358 7.1752 AACRAAMC 2.78668 1.63677 7.03502 ATTWMRAA 3.97126 2.56666 7.01274 WTDCTADG 8.30178 6.22303 6.94912 CTRGGYMB 23.0799 19.7485 6.93412 RGCSGCCG 1.08748 0.441888 6.81465 AGGCBGSC 10.5447 8.22224 6.65229 GCSTKGAG 5.55394 3.88862 6.56768 RGAWMGVR 29.2067 25.6277 6.48395 CSTRGGCB 10.5738 8.26224 6.45778 CKRGCAWS 15.3704 12.6134 6.42797 RTRGTWWH 12.9236 10.38 6.42231 TTRMAAWA 4.83542 3.30002 6.3498 TWCMWCCC 7.26284 5.37039 6.12644 CCDCCSTD 12.6129 10.1303 6.02635 DYGAWTVG 6.88416 5.05357 5.95411 GRGWDAKG 21.0894 17.9875 5.85417 RGMCTMAG 9.76794 7.59703 5.71976 TAAMTSWA 3.20419 2.00619 5.67864 CGMVCGDG 2.39829 1.38736 5.5485 CARCTCHG 10.2437 8.04328 5.41976 AKSHACWG 26.8376 23.5071 5.23738 ARGGGRMG 9.7291 7.6082 5.08562 ATKGWSTY 8.5251 6.54053 5.07462 ACTVARHA 11.5934 9.28612 5.04685 AVAATKMG 5.40829 3.84527 5.00594 TYMRAGTC 5.24323 3.70752 4.97388 AWSSAAAA 7.64152 5.77445 4.91728 CCGVCCGV 1.72832 0.910423 4.91675 ACGHARBC 3.92271 2.61504 4.87782 WBTAGGTC 2.57307 1.54349 4.81778 CGMTRCSR 3.09739 1.95802 4.68935 TGCVWSSG 13.914 11.4315 4.68507 TCCMTHCK 9.21449 7.18155 4.64649 TWCSTTVA 7.17545 5.38806 4.59294 GCTSNMTG 24.2548 21.1277 4.5343 RGNACTYG 11.7196 9.44395 4.51377 GCACKGHY 8.9232 6.93759 4.43646 TWGRCTAN 7.525 5.71137 4.31619 RRYGACGV 3.71881 2.47455 4.27445 GTAKSTRV 8.97174 6.99356 4.25874 ATCCMYWY 7.43762 5.64912 4.09675 CGGWKCGB 1.25255 0.59689 4.06597 AHHCGGAA 3.4081 2.23348 4.00665 ATDMKAAA 4.98107 3.53848 3.96257 AMDAWYCA 11.2924 9.10627 3.91388 TRCSCMGB 14.2829 11.8512 3.81308 TTGCDTCW 4.85484 3.44119 3.78366 ACSBAGHR 13.545 11.1865 3.65619 AGYGAKTB 5.87436 4.31792 3.65021 TVTRATTR 4.42761 3.09463 3.53528 AGKWMAAV 21.2642 18.4134 3.48299 AWACYACA 2.86436 1.82137 3.39836 GGYGGKAS 4.84513 3.45779 3.30966 WCGCCSCS 1.505 0.789994 3.29002 GVTCTTDG 9.16594 7.24195 3.2528 GCTYWGGS 14.5936 12.1934 3.23938 AGAGDCVG 9.92329 7.9313 3.14358 GAAMKNAC 9.71939 7.75104 3.10019 TYASTYAC 4.1169 2.85846 3.0564 WSRSATGG 13.4285 11.1358 3.05365 TGGMCCHG 10.535 8.4989 2.96621 TTCAAASD 4.80629 3.44514 2.92973 AAWYGHAC 3.612 2.44794 2.8879 AGSSTGGG 8.30178 6.50126 2.83564 RCTTMCGG 2.07787 1.2272 2.83336 ATHKMTAG 3.41781 2.29348 2.77691 TRGKTYRR 13.477 11.208 2.76571 TCACTSAD 5.43742 3.99596 2.72578 ATRTKYRT 5.80639 4.31726 2.678 WTWGGYMG 9.69997 7.77668 2.56674 GCMMGCWR 21.8371 19.0677 2.54827 RWGCADAG 12.7197 10.5327 2.53434 TGHCKGCC 8.76784 6.94478 2.48171 TCAGAWYN 11.1661 9.11679 2.45629 TGSGBATR 5.35974 3.94746 2.41344 AYMWAMCC 6.7191 5.13111 2.40268 AAMGKKAA 5.70929 4.25311 2.35209 CAWSWATV 9.89416 7.97117 2.33793 TGCDWTYR 8.91349 7.08964 2.30191 ACACTGTA 1.11661 0.540196 2.29849 GGGCSYCG 1.39819 0.740765 2.16885 ACYGTRKK 8.40858 6.65092 2.12063 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 0 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete