Task #3647 - 3758c179 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 9 minutes (569sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TWCYRRGA 47.98 13.4226 744.21 TTCBYRGA 41.6 10.4074 701.387 RATCRATV 18.4 4.12682 303.974 DTTCYMVG 52.6 27.6656 291.192 CYAVGAAN 38.6 17.894 249.275 ATCRATRN 17.74 5.14266 214.773 TGRMCTYD 40.7 22.1742 178.948 GVMCTYBG 39.48 21.5914 169.351 TRTTTRYH 38.76 21.9881 147.506 GKKCRNVG 45.6 28.5238 134.333 TTRCDYAA 16.88 6.3819 134.085 TTKRTYTW 26.4 13.2497 124.722 AGKTCANN 43.72 27.7691 118.19 WTRTTTRY 26.3 13.6621 112.982 RMCKTYGN 33.06 19.6543 100.198 CYCMGWAN 31.56 18.6783 95.3813 GGGGHGGG 6.3 1.46061 89.6196 GGGWGGRG 9.36 3.01898 89.0407 CCDCCCCS 6.64 1.6272 88.853 TCRATANN 20.24 10.3056 85.5278 GTTTRYHY 29.66 17.9077 81.1646 DNCRAMGK 42.12 29.1355 74.8876 RDMCRAVG 37.14 25.366 65.304 TDHGYAAY 24.04 14.2448 65.2754 CKDCYMVG 35.82 25.0133 54.5629 MDTRKTTR 36.16 25.4235 53.2446 AAAHAAAW 16.36 9.01631 50.9134 TRCHYARY 34.54 24.4215 47.7982 ARTTCYHR 30.56 21.1376 44.8626 TGYCCTNK 24.98 16.3803 44.2069 GYAHRCAS 22.2 14.1511 42.8432 RSTCRVTR 28.1 19.1862 42.4508 GGHGGGGV 9.38 4.35669 42.0891 DAGGRCAD 23.48 15.2852 41.8995 TTDCRWCA 12.08 6.31805 40.8876 TTWDCTWW 23.86 15.7016 40.5846 TBYGTMBY 35.26 25.8636 38.8384 GCYRAGBB 27.64 19.3396 35.7664 ACBDRGAA 20.04 12.9371 34.7266 TSRNTTCB 38.52 29.2931 34.4226 TTKDTTTS 24.06 16.3973 33.8577 TCDMYGWV 32.28 23.7641 32.5475 GGMDGHGG 18.8 12.1074 32.0327 AAANNCAA 25.4 17.8547 30.3746 TRGKWAAN 29.6 21.6694 29.3106 CDMYGTVB 38.16 29.5428 28.9409 WRCYAWSY 38.06 29.4542 28.8982 AGKSCANR 36.78 28.2874 28.6771 AAHBATTA 9.18 4.90186 26.2849 RAKCVAMG 15.86 10.1299 26.0313 GAABYSAN 36.0 27.9024 25.6365 TGWMCCYD 25.0 17.9535 25.5075 GTCWMYRN 34.74 26.7745 25.2848 CDCCCCSV 8.06 4.20618 23.8233 GWGGGNGG 8.62 4.64034 23.3076 DTRCYWAG 16.58 10.9684 22.8191 TACBYRGA 8.34 4.51952 21.6394 RCBMYGYS 33.02 25.6509 21.2526 TTAAWHAW 12.26 7.58312 20.929 CYRWCYCB 27.24 20.5658 19.5663 RMCDCYGH 36.34 28.9502 19.5628 TSAAGGYC 6.58 3.37756 18.8503 AGGSNGNG 25.72 19.2976 18.6675 ACMMMCAC 10.0 5.95908 18.5288 DRKADAYG 30.02 23.2227 18.4666 AATTGATY 3.36 1.26453 18.1832 TTTYRYAA 10.72 6.54946 18.1403 MSYGAGYB 24.48 18.2973 17.667 ATTDCAWC 6.26 3.20465 17.6603 AWARATCA 6.7 3.52716 17.5276 CKSCSTYB 22.98 17.0501 16.8474 YGSHTGCB 21.26 15.5581 16.5691 KVTGYTTR 26.64 20.4244 16.0925 ATCWATYD 8.76 5.17268 15.7338 GTMCTHBG 11.4 7.27404 15.5898 GMGSHGRG 16.58 11.5954 15.5589 TNATTAAC 4.04 1.77152 15.5311 TRNAATYM 22.62 16.9029 15.282 TGNHYTTC 30.38 24.0135 14.7989 ATGWYGMA 5.7 2.95518 14.4599 TTCBVYGA 13.64 9.26618 13.7949 RYGMAAYS 13.94 9.52622 13.7034 RCYTMSKG 19.12 13.9859 13.6645 CTTAKCTN 6.66 3.71263 13.4037 YWCRGTGB 17.7 12.7791 13.3493 TTGGYWRN 31.96 25.6915 13.2431 KCKTATCD 4.5 2.16968 13.1727 GGKTMRRD 26.58 20.766 12.9017 WCCDCCCC 5.1 2.60195 12.8736 TGAVCBAH 18.0 13.1631 12.1908 ATTTCDHA 10.5 6.83083 11.8451 AAVYAYHG 27.18 21.5067 11.4633 ANMCTTBG 22.14 16.9253 11.4319 RGTTAATV 4.98 2.58458 11.4285 CRCMSACR 9.68 6.21177 11.2425 WGGGGHGG 6.64 3.86084 10.5924 AGCSMSGV 12.42 8.53853 10.4859 TCSSHGSM 21.98 16.9204 10.3172 ARAYSAAA 11.22 7.55278 10.2879 TCKKTGWW 14.38 10.2634 9.89506 CGCKSCGS 1.2 0.28023 9.7857 TRNCTYHG 35.08 29.1767 9.56897 RWSGTTAV 9.2 5.9665 9.39597 GHTGBCCK 13.86 9.88747 9.20092 GADAYGRN 21.62 16.7785 8.89699 CMCCAYSB 12.6 8.84125 8.89632 RDCBGWGY 33.52 27.8513 8.61027 KRMTTMKG 20.7 16.0162 8.37637 CGSCSGCS 1.1 0.256309 8.29948 RWSCSCMG 15.76 11.6538 8.11429 TAAAAAWA 3.46 1.68948 7.58348 YDRGRATS 31.6 26.2185 7.49246 WABAAAAW 16.18 12.0996 7.45513 TYGATCYS 5.54 3.21768 7.3849 CARGAHRR 28.42 23.284 7.17535 GRVCKRYG 17.06 12.9291 7.03596 GCGVBCSG 1.94 0.72806 6.91369 TGCYAAGR 6.2 3.75809 6.89387 GTATDTRY 5.7 3.37276 6.86257 TRTACTTW 3.44 1.70835 6.83047 GSADMSGG 11.8 8.37811 6.70826 AAVRTCKA 6.04 3.65163 6.62281 TTRGGHAA 9.12 6.14868 6.42896 TSYCKYCY 24.82 20.0577 6.41018 KRGMAYTG 19.8 15.4713 6.37774 AAKYMRAW 26.6 21.7179 6.34915 DYMCSABG 29.1 24.054 6.34901 ACNMACMG 12.62 9.12052 6.3391 GRGGCHGG 8.28 5.46982 6.27824 TTTTKAAA 5.0 2.88696 6.07314 MAAGGTCB 7.1 4.54082 5.92587 GWCCTNAG 8.54 5.72063 5.84286 RCCTTGAM 5.72 3.45498 5.84127 WBCKWATC 7.76 5.09467 5.68032 TGTWGACW 5.24 3.10374 5.5351 AADGTCBB 19.94 15.7274 5.45551 TARCSTTK 5.48 3.29524 5.44114 CAGCSWNG 15.72 11.941 5.42755 TATCTNHH 18.62 14.5597 5.25994 RCYCRGVG 16.5 12.6849 5.04414 GCKGSGGH 6.5 4.13184 4.98409 AAHAAAWC 9.24 6.3912 4.87678 GSWGBGYG 14.6 11.0198 4.86764 GTWGACWY 5.96 3.7143 4.82095 GCGYABGC 1.32 0.426865 4.78615 RGYKACAB 17.18 13.3441 4.67134 GTTRKYTD 17.66 13.7842 4.61068 AGRDTMAA 14.18 10.6815 4.60699 GTCSMYGN 11.7 8.51801 4.58705 CAGBKCAS 17.86 13.9737 4.54533 GSGAHRGG 8.46 5.78792 4.35385 KGGSYGAG 7.24 4.78094 4.35118 AHGCAHGC 5.06 3.05083 4.21809 DKCKTYGK 18.88 14.9852 3.93785 GGTGGWGN 6.72 4.40903 3.72725 WRRTRACS 15.44 11.927 3.62827 WTTCYATG 5.46 3.41213 3.53539 ATAMRCAS 7.0 4.65413 3.53197 RCRGWGCH 19.44 15.5623 3.4951 RCYMYGRG 19.88 15.9937 3.30866 TRHGYAWG 12.76 9.59734 3.2679 TYGYWMTH 22.36 18.2908 3.22426 KTAWCTMS 6.84 4.55311 3.18162 CDRMTTCS 13.9 10.6371 3.01501 AWYYRWAC 16.26 12.7534 2.98027 CSKMYGRS 16.72 13.175 2.93534 TTCAYGGA 2.34 1.1204 2.84999 TCAATCRW 3.22 1.74438 2.8218 GWKCKYYG 14.92 11.5759 2.79731 TKTTTTCY 10.78 7.93118 2.74076 TGGHTGKC 8.14 5.67998 2.67878 TGYCCTMM 8.88 6.30939 2.64485 GTRTVCKY 9.78 7.09905 2.46095 ATRWAVTA 6.6 4.42354 2.40645 AAAMWGWA 12.94 9.87261 2.35631 MCADTTCN 25.58 21.4549 2.30158 ATTAACYY 3.5 1.98067 2.29245 RTSYGWCY 17.74 14.2066 2.23372 TSCCCCAY 4.24 2.54887 2.21723 CKTTGDAR 10.96 8.15314 2.18846 ABATRCMM 13.36 10.2723 2.15335 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete