Task #3642 - 855f79b7 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 10 minutes (631sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TAWAAWTA 22.06 2.024 749.467 AWAAWTAR 24.76 5.21992 452.182 ATTNWTAG 18.98 3.43706 387.863 WAAATMGH 23.08 5.78901 346.806 AAWTMGHH 30.48 10.8625 300.009 TGARTCAB 16.14 4.34103 212.813 ARCARSTG 29.24 12.7624 197.035 AATMGMHH 27.54 12.0865 180.62 WTTDTAGN 25.22 11.7922 140.411 TATYTTDG 12.84 3.90081 139.612 GGGHGGGG 11.34 3.23604 132.606 ACARYTGM 19.1 8.27488 118.537 GRCAGSTG 21.68 10.2018 114.519 GGGGHGSG 11.76 4.16785 98.9167 WAMATAHM 19.82 9.74144 91.744 CKATTTTR 7.9 2.34112 83.5626 RACCWCAD 19.1 9.65078 81.2409 GGSGGHGG 12.32 4.99196 81.0096 CGGSGDCG 4.58 0.845679 80.5407 TGHGGTYD 21.7 11.7742 77.3399 ATTKWTAH 10.32 3.98188 72.5584 GAKTCABN 24.18 13.9819 72.0014 TTDTAGNH 26.9 16.5736 65.3058 CGCNTVCG 5.44 1.44858 63.4818 GAMTCABN 23.08 13.8485 58.8133 WWRSAAWS 35.22 24.2164 57.9268 CGVGGCSG 5.9 1.84128 54.9636 GCGDCSGS 7.92 3.00015 54.9486 GCGRNGCG 5.28 1.54351 53.4785 KCGWKCGB 5.22 1.54716 51.6372 AGYYGYTN 35.38 24.8844 51.2857 GGYRGGGN 22.74 14.1147 50.0425 RWARCVAM 27.94 18.6147 48.0712 TATTMWTA 5.28 1.65985 47.5658 CGRHGCGV 6.22 2.18941 47.3777 AAWYWTAG 8.92 3.88447 46.6561 CGDKMGCG 4.56 1.31118 46.0625 RCARHTGG 22.48 14.2124 45.3286 ACCWCARN 22.64 14.3938 44.6086 WRSAATGN 25.22 16.6146 43.7827 TGCASCTG 9.44 4.39059 42.2721 DKBSWTTG 39.6 29.6681 40.7174 KGCGHDCG 5.24 1.83083 38.933 DGGSGGCG 7.1 3.06088 35.8856 ASBSAMMG 32.74 23.9175 35.2741 WWRTAWCY 16.32 9.96637 33.8382 ADAMMTAC 7.5 3.39772 33.8065 ATTYYKGG 13.56 7.83289 33.214 CGDDCGRS 7.1 3.19166 32.145 TGASTAAB 6.38 2.72013 32.1449 GKARGBRR 36.24 27.4258 32.079 TTAGTMAY 4.34 1.50674 31.0429 WWDCBAAR 32.46 24.086 30.9385 CGYYVCGG 5.82 2.41342 30.5689 RSAAWSSR 33.76 25.3149 30.4853 ATHGCWYH 17.88 11.4774 30.2719 ATAYDTAG 4.28 1.49189 30.2396 TAHTTDRA 12.52 7.22405 29.8706 GCARSYGC 14.72 9.02404 28.6942 RGKMVGWG 37.98 29.4249 28.4897 GSCSGHCG 6.24 2.77986 27.7613 GGKWHGGR 16.58 10.6604 26.839 GRMCTNGR 23.9 16.8688 26.8073 GAGVSMGR 26.14 18.8419 26.7247 TAKKTMKG 10.26 5.72897 25.8334 DSGSWMGG 23.6 16.7213 25.5683 RGRCAGSK 29.02 21.5335 25.4874 GGSGGCGH 5.4 2.31129 25.4703 DACRVWTG 18.28 12.1786 25.442 HVGTKACN 32.24 24.4801 25.2471 WDCVAAGN 37.02 28.9389 24.8861 RAHYGVAD 37.46 29.6452 22.419 GTYACBDN 32.0 24.5929 22.2718 GGGHGHGG 13.38 8.3901 22.2348 AGAMMTAG 5.0 2.20081 21.1298 GAAATMGM 4.82 2.09132 20.9091 TRSVWACN 35.58 28.1221 20.4893 RKSWTTGN 36.78 29.258 20.3937 DCGCKRCG 4.2 1.71492 20.3405 ACDCAHWC 14.5 9.46962 19.9827 KCGNCCCG 4.12 1.69088 19.5055 ARGDCARR 28.3 21.5633 19.2335 CGWBKGCG 3.82 1.52287 18.9009 TTTDTAWC 5.18 2.41657 18.5394 GTSSGTRN 14.06 9.26489 17.9806 DGKGSGTG 14.38 9.53815 17.8786 GRWGMVMG 32.86 25.9375 17.7046 AADKAHMA 24.08 17.9463 17.6104 CGVRHCGG 4.82 2.21141 17.5831 CATTSYWS 15.34 10.3662 17.5553 GCSRRGSC 18.94 13.4943 16.9346 ASSGWGVG 14.56 9.77174 16.8673 CGRYCCGV 3.86 1.64655 15.786 AWKCMASR 24.84 18.8367 15.7591 CGKWKCCS 5.92 3.06494 15.4643 WGVMCTKG 29.32 22.9507 15.4608 AMTKGADH 19.62 14.2967 14.8669 AAKATRGM 7.42 4.20098 14.862 CGRCSGRG 3.78 1.62775 14.8211 CGCHCGRV 5.76 2.98654 14.7035 ANDAWCAA 12.72 8.42981 14.6229 GSYTHCGG 6.26 3.35777 14.5169 TGAWSTMA 7.22 4.08548 14.2444 GCTCSGBS 8.84 5.37976 13.5006 AMYYACTK 12.36 8.25786 13.1076 WSAKACMD 30.48 24.3412 13.0434 GRARCRGV 26.12 20.3551 12.8298 GGSGWSGM 12.34 8.29767 12.4449 GWSGTHRG 12.92 8.78404 12.42 RWNCCYAG 27.56 21.7622 12.1605 TGBAATYN 12.32 8.31816 12.0152 ARWSMGAH 24.22 18.7483 11.8747 WKAATWGM 10.32 6.68523 11.832 TSGCWYBY 31.3 25.287 11.7432 TBCBTRGM 29.08 23.2378 11.6308 WGCGDCSG 4.12 1.97369 11.6162 CARYTGWG 16.94 12.3088 11.5272 TWGAAHTV 10.04 6.49213 11.3904 RGRTSGHD 33.78 27.7117 11.0835 CWSAKACV 20.3 15.3215 11.0732 GCMTGCGY 3.52 1.59185 11.0551 GGAWTGWD 9.04 5.72566 10.8525 GRDCGHCG 4.26 2.1058 10.7792 ACAGGTGB 5.92 3.31368 10.6445 CYWCARAS 19.8 14.9437 10.5059 ACTBAVMA 16.46 12.0133 10.3833 ATNGAAHT 6.02 3.41234 10.2285 GGCSGGCG 2.34 0.8791 10.0799 GKMYCKGR 23.22 18.1048 9.83529 ATTKWAAG 3.62 1.70705 9.80308 GRCARWGV 27.46 22.0155 9.66965 KCWYTGNG 32.68 26.938 9.36372 WAHKTAGY 10.72 7.2289 9.23829 WWCSHAAV 23.74 18.6617 9.21244 RTGACVWM 16.4 12.1021 9.10609 GMGCGWSC 4.34 2.24967 8.86924 AATMGAHG 3.44 1.62938 8.70022 YRSGGTGR 13.26 9.43044 8.63587 AABAATMG 3.88 1.94061 8.51666 ATKARTWA 4.7 2.53334 8.39819 RGACARWG 10.78 7.35516 8.38218 RSCAYCTG 13.62 9.77838 8.25992 GDASGARG 10.32 6.98493 8.23384 CGHDCGTB 3.88 1.95519 8.19326 GCMYGGVD 30.76 25.3614 7.90179 GCGKCGWV 3.6 1.7818 7.69149 CGRCGAGS 1.9 0.700808 7.05007 WAADTAVG 8.94 5.94769 7.03337 YCGGKCGN 4.34 2.34855 6.89768 GWDCVAAS 15.98 11.997 6.83825 TAWRSMWA 14.32 10.5499 6.75101 DCGHMRCG 6.46 3.97324 6.72602 WTKGYAWK 16.16 12.1808 6.63414 AANWAAAC 7.2 4.56935 6.60354 WAGYCAYY 14.3 10.5562 6.54286 GCGBGCGG 2.58 1.14132 6.47733 GCTDCGRB 7.96 5.19387 6.4588 CACTTCCG 1.48 0.479808 6.34905 ASKAMGVA 10.64 7.44448 6.18473 TAGCHYHK 24.62 19.916 6.12974 RAMBTGAR 15.08 11.3115 5.94119 CTTCCGGB 3.24 1.61389 5.81637 AGCCWKGR 15.64 11.8226 5.80657 RASARACM 16.48 12.5886 5.64661 KVGWAMGR 15.74 11.9441 5.54354 CGWDMCCG 2.48 1.11223 5.47266 GWATGTDV 9.94 6.9293 5.40502 TKGYTTSR 12.9 9.46678 5.39963 ADVGAYKA 13.2 9.73475 5.33964 WTTRAAAM 6.02 3.72721 5.30143 GGCGWCSG 1.5 0.516895 5.20789 WCGGHGBC 7.04 4.55337 5.14738 ANCCYAGV 24.64 20.109 5.02151 ACTTCCGK 1.68 0.626649 4.97823 ATRCRYAC 3.52 1.85957 4.8187 ATATBTWT 4.14 2.31491 4.801 ASNAACAG 11.22 8.08438 4.76995 CGRYWCGS 3.1 1.56544 4.71669 TCCGNHCG 2.52 1.17419 4.53857 RCYYAGDG 24.72 20.2654 4.51716 TCSGCCSC 3.14 1.60427 4.48646 GGGVCMGG 9.04 6.26148 4.47778 AKCTGYMA 15.26 11.6719 4.33996 RCCARYTG 13.8 10.3811 4.32785 AYAKABAC 8.74 6.02739 4.29482 GGCANGMR 17.28 13.505 4.15923 TACVCACW 5.1 3.08841 4.12145 CWRCGRCG 2.94 1.48157 4.09255 TATMWWTG 4.16 2.37315 4.04979 ASGCYYCG 4.2 2.40765 3.97608 TSGHTMWG 15.16 11.6387 3.91573 GWNCTAMR 13.86 10.4989 3.80969 ARKMATYC 11.64 8.55402 3.80885 TGSGYATG 3.5 1.89803 3.78734 TKCYAGGD 14.44 11.019 3.75889 GCGKTGSC 3.08 1.59819 3.71712 DCAGWGMR 26.42 21.9976 3.66239 ADGKCTAW 9.12 6.41161 3.63525 RYGATGWM 7.46 5.0241 3.62841 KWACTYAR 8.2 5.63918 3.62367 GGGHGVGH 22.54 18.3938 3.6087 GAGGNGSG 8.74 6.10015 3.5414 AATWACYY 4.96 3.02595 3.43737 CGGTGGCS 1.8 0.755523 3.10794 GTAAYYND 14.74 11.3796 3.05544 CWDGGHMG 29.74 25.2395 3.05275 AGGDGMRG 16.74 13.1842 2.99614 ATWWAGHA 7.9 5.45709 2.89978 TGWTACTR 2.84 1.46791 2.87099 GRWACTDR 12.22 9.17572 2.84268 MTSCSTGS 18.84 15.1678 2.50852 GDGCCKGG 9.64 6.97797 2.46746 GDTSGYAK 11.78 8.84753 2.37619 AYCTGTTS 4.24 2.55138 2.17956 AGGBWSGA 10.0 7.32391 2.15028 ACCCMCAM 5.98 3.94006 2.12794 KCGDTMCG 1.42 0.550652 2.12389 ACGWDCGB 2.0 0.923177 2.04703 RAYTCMAG 7.7 5.37689 2.00008 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete