Task #3660 - 220f8324 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 12 minutes (771sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) YNCKBYCB 12.0893 5.35977 70.9447 BYNCYKYC 11.2588 4.94119 66.7011 AWRYRHWY 6.33075 2.10411 58.8907 RHARHRHW 11.794 5.90317 49.9807 NCKKYCBB 11.0927 5.44698 48.9275 WDYAYDKW 9.21004 4.1601 48.6723 RHAWWYRY 5.05722 1.63339 47.3779 VGGMDVNG 11.9232 6.10467 47.319 YRTANANV 5.03876 1.86434 36.4141 NHYYVCAG 9.46844 4.80864 36.0755 BTBYCYKY 9.21004 4.65867 35.2423 YKHCTYYH 7.97342 3.89197 32.6075 ANBGHWDH 16.113 10.1088 32.3518 CDGKVNNN 38.2798 30.0664 28.1307 RRMDGNAR 9.63455 5.32814 27.3012 GRGRHDGD 9.0993 4.93591 27.1739 DYAYDGTN 6.01698 2.8233 25.2046 WHAYAHNS 6.23846 3.07117 22.6943 NSDTNTHT 9.0993 5.31618 19.8171 TVYNYVCA 6.38612 3.38093 17.9004 DRYBTKTG 5.35253 2.72403 15.981 TGBRRWKW 5.70321 2.97923 15.8736 HRHABYRC 5.62938 2.98585 14.5557 GCKSVKBK 6.27538 3.46256 14.5025 KTGYABDD 5.62938 3.01255 13.9835 GTWDWHYV 5.1495 2.75626 12.0034 RHBTKTGH 5.94315 3.35694 11.7357 HWYVYAYR 6.10927 3.49323 11.528 NRRMRSSA 8.39793 5.28649 11.3574 RVKGGMRV 7.88114 4.87962 11.2971 CBKCYCNV 5.75858 3.32986 9.66611 KCCNBBKC 5.88778 3.48357 8.70803 HATHNYWY 5.70321 3.35337 8.50975 NKGWTDTH 5.05722 2.88884 8.033 ASDHAVWW 5.37099 3.152 7.5922 BCDGTKHY 5.29716 3.1146 7.26205 WGDRMHKG 8.98856 6.09524 6.99021 WWWTYRBD 5.4079 3.26882 6.11754 TBTMMYHY 5.29716 3.29948 4.29459 KSRGNBAG 6.31229 4.11758 4.21925 HMCMKYCH 5.44481 3.4958 3.16372 GWSGVDMN 7.88114 5.54349 2.72126 GWGHKBAB 5.07567 3.25614 2.38368 TWVTDWRH 5.18642 3.37245 2.01474 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 0 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 35 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 5 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 1 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete