Task #3639 - 7d117a34 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 8 minutes (513sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) HGATWASV 69.36 25.0291 932.253 CKWATCDN 60.24 19.7199 846.554 GATWMGVN 59.34 19.5164 822.492 TTAWCTNH 56.14 25.6601 444.285 GGGYGBGG 14.66 3.75752 202.853 ATWMGVRN 47.02 27.536 178.334 DGGGYGBG 24.48 12.2228 114.792 DCKGATHR 27.32 14.5042 111.556 GGYGBGGY 15.32 6.19063 105.373 KTTAWCTN 28.94 16.5897 94.6186 GATWAMRN 33.6 20.9072 86.1296 TATMTBYV 40.22 27.2978 76.6171 GGNHSGAG 22.04 12.8549 61.6127 GRGGNHGG 28.4 18.5947 53.7534 ADAYAWAS 21.4 12.8088 53.5782 RGGHWSGR 37.28 26.4227 53.3454 ADYRDATR 35.02 24.9902 46.1673 AAWABDAA 15.5 8.89094 40.9649 TSRCTCAB 15.54 8.96291 40.2407 TATYMGHN 26.64 18.1089 40.1314 AAWBMRAA 20.0 12.6735 37.975 TTADCTHG 10.12 5.04337 37.8515 TGAGYCAY 7.62 3.36762 36.8644 GTATDYRN 13.7 7.79831 35.719 GGABBBGR 32.14 23.4062 34.9653 TVWRTATK 12.14 6.6729 34.6316 CSAYCCND 24.06 16.3476 34.4661 AHATACNN 16.96 10.4603 34.139 GRAKSSAV 36.7 27.8372 32.2047 GRTSGMDB 32.3 23.8274 32.086 GGKMSGKR 15.82 9.76701 30.774 ATWMGVYN 35.98 27.5236 28.8852 ATCBGATB 6.02 2.62326 28.1108 CGSSGCSG 2.1 0.470129 25.0396 AYRCRCAC 7.64 3.85458 24.9172 HGCSATCB 9.74 5.40095 24.6758 AWATGHWW 15.64 10.0589 24.5482 GYGKGGYN 26.2 19.2483 23.1616 AVVADCCA 27.94 20.8754 22.5038 TSVMTTYS 30.08 22.8457 22.2013 RSSGASSG 11.2 6.66956 22.0958 TMKGTMVY 22.36 16.031 21.4355 TDCWKAGY 22.64 16.4001 20.1857 AACNAAMN 17.88 12.2935 20.063 CGCVYBCG 2.96 0.989727 19.9584 TWRTCRHY 21.14 15.122 19.8348 CKGATHGS 7.08 3.69604 19.7049 RGKBASAG 33.56 26.3676 19.4619 AASSBARR 35.28 27.9746 19.4267 GCWKAGBC 15.98 10.7745 19.0691 KTWATYMG 10.22 6.09626 19.0688 GMVYTBGR 37.18 29.8622 18.6185 RCSATCYB 14.54 9.61836 18.5253 TCSDCCCN 16.62 11.3767 18.3398 GTSBNTGS 37.0 29.7675 18.0484 TTGDTTKB 14.78 9.89104 17.6345 TCHCYRSC 28.28 21.7479 17.5 MGTCAYYV 13.16 8.60666 16.9298 TTYRDTTV 19.44 13.9497 16.7194 VATCCBDV 30.66 24.087 16.2351 GSVTSSGY 21.34 15.6807 16.0782 ABATAGBR 13.16 8.69632 15.8109 TAKSTAYR 7.52 4.22378 15.7885 TWHGAAHN 28.54 22.312 14.8479 CRCNCACD 18.1 12.9883 14.7015 VAATATGV 4.72 2.28777 13.9684 GGMVGAGS 16.18 11.4093 13.9191 ATCNVTNC 27.76 21.717 13.9053 AWKHAAAY 15.66 10.9906 13.6438 CAGGKCBD 19.36 14.2758 12.9367 CGSGCSGS 2.24 0.750867 12.9115 GGYGBGBG 13.1 8.92079 12.579 AKWTWAAA 8.86 5.46688 12.4571 AGGTCHNR 17.62 12.8113 12.3759 CMKCCCCD 14.72 10.3132 12.337 GATYGGHY 4.52 2.22374 12.2244 STMACTBN 33.12 26.927 12.1907 DWAGGWMR 28.48 22.6126 12.1411 ASMRAYVG 28.12 22.2991 12.004 WWAVCAAB 22.26 16.9984 11.7149 CSGMSCGN 4.14 2.02385 10.7487 WCAYCCWN 29.48 23.8125 10.2054 AAGAVMDA 19.26 14.5008 10.1906 AGMMMKGM 32.9 27.072 9.83656 RMGTCRYN 19.26 14.544 9.82916 TWVAAATR 9.22 5.95318 9.77179 CTWTGWAV 8.84 5.6601 9.58872 TGATYGGH 3.16 1.40947 9.5634 TTCYTKYC 13.3 9.39161 9.36319 TTTARAAA 3.2 1.44767 9.24016 KTMATCSB 7.38 4.5232 9.22566 TAATCYHW 8.64 5.53132 9.16453 AATATGDY 3.14 1.41663 9.00838 GATMGBVR 15.22 11.084 8.99843 GGWTSSTR 9.88 6.57352 8.77764 GCGVCSGV 3.24 1.50244 8.49939 TSTMAYTB 20.88 16.1628 8.49647 RAGKTCAN 13.18 9.38 8.45796 ATAWWBAA 8.02 5.09121 8.39598 GAVMKABG 20.22 15.6215 8.08676 GMNSGGCG 5.38 3.07447 7.75001 TRCRMACD 12.88 9.20059 7.69992 TCNGYYTC 18.4 14.0528 7.59294 AAYYGHAV 14.7 10.7917 7.54511 AVAADRTA 15.08 11.1257 7.52488 AKSGYWVG 21.9 17.2178 7.52306 ATCMGYDR 14.52 10.669 7.24021 CKTCCKSB 17.14 12.9773 7.22045 WHAKTMAY 22.64 17.943 7.16314 RCTTTGVD 14.56 10.7157 7.13549 TAKSTHRR 25.76 20.8389 6.98829 GARCHNAG 25.12 20.2515 6.95909 CVRKCACB 19.14 14.8018 6.92992 SYGGGGAB 12.14 8.65291 6.86287 KGHCTVTG 24.62 19.8252 6.72525 RKBCCAGG 18.26 14.0677 6.50441 RCCVTKCS 13.24 9.64537 6.4413 AGAVMGAH 17.68 13.6044 6.07527 CRAGKYCD 12.3 8.91265 5.70958 AADCAABH 18.24 14.1589 5.68497 ACTRTABD 7.76 5.13668 5.17687 KSGAKYSR 18.76 14.7175 5.03673 RMMATASH 19.36 15.2654 5.00544 RGCYTKGS 21.92 17.607 4.9707 AGHADASR 30.88 25.9804 4.89864 ASTTRBCW 22.2 17.8754 4.8975 TRYGSATK 7.44 4.90281 4.84626 AGSAMGHV 25.96 21.3713 4.81002 KYACTRWR 20.16 16.0214 4.80955 GSARABVG 32.54 27.5761 4.78852 MAARTATK 4.4 2.51201 4.75847 AYCKMMCY 17.48 13.6045 4.73883 TBTAAATW 4.2 2.36555 4.69728 DAAWATAN 10.88 7.80347 4.66886 RTYGRTYG 3.12 1.58216 4.6588 RRGAMADG 30.68 25.8392 4.62911 ASGMCCMR 12.62 9.32627 4.50188 RCYCAGDG 19.48 15.45 4.48476 RACTCAVD 15.22 11.6512 4.22629 GYYACCAH 9.6 6.7845 3.96993 ATGTBBGT 6.94 4.56945 3.95292 GYTVGGWN 25.56 21.1512 3.90291 GGAATATG 1.04 0.298372 3.85977 STAYAGWV 12.24 9.09711 3.63306 GSCGKCSG 1.64 0.648692 3.34549 AACWACRA 2.4 1.14279 3.29876 AAABYSAA 8.06 5.5603 3.22094 ATYYGTAD 5.8 3.71155 3.15653 TGCMYGBY 19.28 15.4692 3.15135 GARGHGSG 10.1 7.30732 3.06562 TGAGKTCA 2.7 1.36389 2.97948 ACTKAAHW 9.12 6.48535 2.91495 CBKTCCKK 16.76 13.2156 2.905 TBKRATCC 5.48 3.47508 2.90312 TRGNGASA 17.22 13.6396 2.85294 TWATCHGG 9.22 6.58119 2.81325 DGRGGGYG 12.38 9.32043 2.80939 TAWRGCGA 1.44 0.546616 2.69379 RGTCMTAS 4.58 2.78725 2.59703 ABRTATGV 7.82 5.42337 2.55411 WTGCYWTD 17.44 13.8867 2.53817 CCAGGSYB 19.36 15.6427 2.51684 ASKTGGRD 18.28 14.6707 2.41596 CSMCGMCK 3.9 2.2813 2.31706 RCDCACWG 16.3 12.8872 2.31256 TSTAGGWC 3.14 1.71948 2.18979 TGKTWAWY 11.7 8.81867 2.046 RTKCTRRG 17.02 13.5808 2.04332 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete