Motif finder

Task #3639 - 7d117a34

Status Start End Updated Duration Sequences Logs Task Bundle
finished 5 months ago 5 months ago 5 months ago 8 minutes (513sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
HGATWASV 69.36 25.0291 932.253
CKWATCDN 60.24 19.7199 846.554
GATWMGVN 59.34 19.5164 822.492
TTAWCTNH 56.14 25.6601 444.285
GGGYGBGG 14.66 3.75752 202.853
ATWMGVRN 47.02 27.536 178.334
DGGGYGBG 24.48 12.2228 114.792
DCKGATHR 27.32 14.5042 111.556
GGYGBGGY 15.32 6.19063 105.373
KTTAWCTN 28.94 16.5897 94.6186
GATWAMRN 33.6 20.9072 86.1296
TATMTBYV 40.22 27.2978 76.6171
GGNHSGAG 22.04 12.8549 61.6127
GRGGNHGG 28.4 18.5947 53.7534
ADAYAWAS 21.4 12.8088 53.5782
RGGHWSGR 37.28 26.4227 53.3454
ADYRDATR 35.02 24.9902 46.1673
AAWABDAA 15.5 8.89094 40.9649
TSRCTCAB 15.54 8.96291 40.2407
TATYMGHN 26.64 18.1089 40.1314
AAWBMRAA 20.0 12.6735 37.975
TTADCTHG 10.12 5.04337 37.8515
TGAGYCAY 7.62 3.36762 36.8644
GTATDYRN 13.7 7.79831 35.719
GGABBBGR 32.14 23.4062 34.9653
TVWRTATK 12.14 6.6729 34.6316
CSAYCCND 24.06 16.3476 34.4661
AHATACNN 16.96 10.4603 34.139
GRAKSSAV 36.7 27.8372 32.2047
GRTSGMDB 32.3 23.8274 32.086
GGKMSGKR 15.82 9.76701 30.774
ATWMGVYN 35.98 27.5236 28.8852
ATCBGATB 6.02 2.62326 28.1108
CGSSGCSG 2.1 0.470129 25.0396
AYRCRCAC 7.64 3.85458 24.9172
HGCSATCB 9.74 5.40095 24.6758
AWATGHWW 15.64 10.0589 24.5482
GYGKGGYN 26.2 19.2483 23.1616
AVVADCCA 27.94 20.8754 22.5038
TSVMTTYS 30.08 22.8457 22.2013
RSSGASSG 11.2 6.66956 22.0958
TMKGTMVY 22.36 16.031 21.4355
TDCWKAGY 22.64 16.4001 20.1857
AACNAAMN 17.88 12.2935 20.063
CGCVYBCG 2.96 0.989727 19.9584
TWRTCRHY 21.14 15.122 19.8348
CKGATHGS 7.08 3.69604 19.7049
RGKBASAG 33.56 26.3676 19.4619
AASSBARR 35.28 27.9746 19.4267
GCWKAGBC 15.98 10.7745 19.0691
KTWATYMG 10.22 6.09626 19.0688
GMVYTBGR 37.18 29.8622 18.6185
RCSATCYB 14.54 9.61836 18.5253
TCSDCCCN 16.62 11.3767 18.3398
GTSBNTGS 37.0 29.7675 18.0484
TTGDTTKB 14.78 9.89104 17.6345
TCHCYRSC 28.28 21.7479 17.5
MGTCAYYV 13.16 8.60666 16.9298
TTYRDTTV 19.44 13.9497 16.7194
VATCCBDV 30.66 24.087 16.2351
GSVTSSGY 21.34 15.6807 16.0782
ABATAGBR 13.16 8.69632 15.8109
TAKSTAYR 7.52 4.22378 15.7885
TWHGAAHN 28.54 22.312 14.8479
CRCNCACD 18.1 12.9883 14.7015
VAATATGV 4.72 2.28777 13.9684
GGMVGAGS 16.18 11.4093 13.9191
ATCNVTNC 27.76 21.717 13.9053
AWKHAAAY 15.66 10.9906 13.6438
CAGGKCBD 19.36 14.2758 12.9367
CGSGCSGS 2.24 0.750867 12.9115
GGYGBGBG 13.1 8.92079 12.579
AKWTWAAA 8.86 5.46688 12.4571
AGGTCHNR 17.62 12.8113 12.3759
CMKCCCCD 14.72 10.3132 12.337
GATYGGHY 4.52 2.22374 12.2244
STMACTBN 33.12 26.927 12.1907
DWAGGWMR 28.48 22.6126 12.1411
ASMRAYVG 28.12 22.2991 12.004
WWAVCAAB 22.26 16.9984 11.7149
CSGMSCGN 4.14 2.02385 10.7487
WCAYCCWN 29.48 23.8125 10.2054
AAGAVMDA 19.26 14.5008 10.1906
AGMMMKGM 32.9 27.072 9.83656
RMGTCRYN 19.26 14.544 9.82916
TWVAAATR 9.22 5.95318 9.77179
CTWTGWAV 8.84 5.6601 9.58872
TGATYGGH 3.16 1.40947 9.5634
TTCYTKYC 13.3 9.39161 9.36319
TTTARAAA 3.2 1.44767 9.24016
KTMATCSB 7.38 4.5232 9.22566
TAATCYHW 8.64 5.53132 9.16453
AATATGDY 3.14 1.41663 9.00838
GATMGBVR 15.22 11.084 8.99843
GGWTSSTR 9.88 6.57352 8.77764
GCGVCSGV 3.24 1.50244 8.49939
TSTMAYTB 20.88 16.1628 8.49647
RAGKTCAN 13.18 9.38 8.45796
ATAWWBAA 8.02 5.09121 8.39598
GAVMKABG 20.22 15.6215 8.08676
GMNSGGCG 5.38 3.07447 7.75001
TRCRMACD 12.88 9.20059 7.69992
TCNGYYTC 18.4 14.0528 7.59294
AAYYGHAV 14.7 10.7917 7.54511
AVAADRTA 15.08 11.1257 7.52488
AKSGYWVG 21.9 17.2178 7.52306
ATCMGYDR 14.52 10.669 7.24021
CKTCCKSB 17.14 12.9773 7.22045
WHAKTMAY 22.64 17.943 7.16314
RCTTTGVD 14.56 10.7157 7.13549
TAKSTHRR 25.76 20.8389 6.98829
GARCHNAG 25.12 20.2515 6.95909
CVRKCACB 19.14 14.8018 6.92992
SYGGGGAB 12.14 8.65291 6.86287
KGHCTVTG 24.62 19.8252 6.72525
RKBCCAGG 18.26 14.0677 6.50441
RCCVTKCS 13.24 9.64537 6.4413
AGAVMGAH 17.68 13.6044 6.07527
CRAGKYCD 12.3 8.91265 5.70958
AADCAABH 18.24 14.1589 5.68497
ACTRTABD 7.76 5.13668 5.17687
KSGAKYSR 18.76 14.7175 5.03673
RMMATASH 19.36 15.2654 5.00544
RGCYTKGS 21.92 17.607 4.9707
AGHADASR 30.88 25.9804 4.89864
ASTTRBCW 22.2 17.8754 4.8975
TRYGSATK 7.44 4.90281 4.84626
AGSAMGHV 25.96 21.3713 4.81002
KYACTRWR 20.16 16.0214 4.80955
GSARABVG 32.54 27.5761 4.78852
MAARTATK 4.4 2.51201 4.75847
AYCKMMCY 17.48 13.6045 4.73883
TBTAAATW 4.2 2.36555 4.69728
DAAWATAN 10.88 7.80347 4.66886
RTYGRTYG 3.12 1.58216 4.6588
RRGAMADG 30.68 25.8392 4.62911
ASGMCCMR 12.62 9.32627 4.50188
RCYCAGDG 19.48 15.45 4.48476
RACTCAVD 15.22 11.6512 4.22629
GYYACCAH 9.6 6.7845 3.96993
ATGTBBGT 6.94 4.56945 3.95292
GYTVGGWN 25.56 21.1512 3.90291
GGAATATG 1.04 0.298372 3.85977
STAYAGWV 12.24 9.09711 3.63306
GSCGKCSG 1.64 0.648692 3.34549
AACWACRA 2.4 1.14279 3.29876
AAABYSAA 8.06 5.5603 3.22094
ATYYGTAD 5.8 3.71155 3.15653
TGCMYGBY 19.28 15.4692 3.15135
GARGHGSG 10.1 7.30732 3.06562
TGAGKTCA 2.7 1.36389 2.97948
ACTKAAHW 9.12 6.48535 2.91495
CBKTCCKK 16.76 13.2156 2.905
TBKRATCC 5.48 3.47508 2.90312
TRGNGASA 17.22 13.6396 2.85294
TWATCHGG 9.22 6.58119 2.81325
DGRGGGYG 12.38 9.32043 2.80939
TAWRGCGA 1.44 0.546616 2.69379
RGTCMTAS 4.58 2.78725 2.59703
ABRTATGV 7.82 5.42337 2.55411
WTGCYWTD 17.44 13.8867 2.53817
CCAGGSYB 19.36 15.6427 2.51684
ASKTGGRD 18.28 14.6707 2.41596
CSMCGMCK 3.9 2.2813 2.31706
RCDCACWG 16.3 12.8872 2.31256
TSTAGGWC 3.14 1.71948 2.18979
TGKTWAWY 11.7 8.81867 2.046
RTKCTRRG 17.02 13.5808 2.04332

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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