Task #3345 - 6b8bed39 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 48 minutes (2884sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) GGGHGGGG 12.4725 4.41797 198.833 AAANYRAA 20.119 9.71307 184.238 GGGGHGGG 11.4147 4.41797 153.924 AAWYRAAW 14.8854 6.82824 146.094 GGRSKYGG 19.7334 10.9906 120.401 TYVSTWHC 37.2411 26.6854 96.9259 GGYGGSGS 12.3733 6.23876 92.4629 AANVAAAS 29.1097 20.0603 83.7319 AAHRAHAA 19.0392 11.7051 80.553 GAGKHVGR 33.4949 24.2322 77.7704 AGGHMGDR 35.357 26.1067 74.1234 AASHGRAA 17.4967 10.8189 70.6084 RVASGHAG 37.7589 28.7295 66.5914 AGHAMKVA 27.7545 19.9153 61.9213 GGWHVGDG 38.1005 29.6036 57.2659 AAYRAAYR 10.1036 5.54162 55.9151 TTKDTTTV 20.0639 13.6034 54.5873 RGBGAHVG 34.4645 26.4971 52.9048 ACRSWCAC 9.96033 5.56993 51.3396 GGGHHGGR 24.2948 17.4353 51.0204 GDBSGASG 22.1133 15.6097 49.5009 ARSHAAGV 35.39 27.6052 48.9487 GAABBVAM 33.2856 25.7598 47.3358 CRDRGCYR 34.8281 27.2472 46.4382 GCGGSGCB 6.19216 2.99732 45.337 AAANNCAA 16.2957 10.8593 45.2034 TATBTWWR 11.4037 6.92496 44.0895 WTRVATAN 15.877 10.583 43.5821 GVCTYRGN 37.208 29.8294 41.2895 TGTRYGTG 6.80917 3.55269 40.5076 GGSHGGAG 14.2353 9.37902 40.0176 GCGHGCGB 4.42926 1.94114 39.2501 GHVCKGRG 33.4398 26.4778 38.7954 RGMHMYGG 37.0648 29.9293 38.0685 ADWMGDAA 20.9013 15.256 36.5286 DRVCTMAG 31.8973 25.2307 36.1739 DGCSTBSG 23.3032 17.4183 35.9454 AMWNAGWA 25.5729 19.4748 35.6466 CGDSSGCG 4.63861 2.19071 33.919 AWTDCDWA 12.4614 8.19094 33.8179 CCRCCCCD 9.29925 5.66153 33.3602 GRCADRGV 36.0291 29.4554 31.5058 ARRDYMGA 29.5284 23.3858 31.3712 GGAGGGRV 15.0397 10.4689 31.3353 CNTVCSTD 36.1503 29.6006 31.1253 GWVSBTGG 30.9608 24.7831 30.447 GNGAYWGR 24.5372 18.9155 30.0007 ABNWACNA 31.5998 25.4822 29.107 TGRRKWYR 34.3103 28.079 28.4463 RCTWCSTN 21.0886 15.9788 27.5278 AAGNMAAW 17.056 12.4509 26.9544 TNACYKWR 29.5064 23.7449 26.4028 RGBGCWSG 23.0167 17.8494 25.5662 AYMAAWYA 9.58572 6.2121 25.3553 ATTKTWWW 10.4672 6.93615 25.2859 GCTNCGGN 10.346 6.86751 24.6125 CGSMKCGS 6.53372 3.84852 23.957 TAMMTANH 14.6871 10.5996 23.4536 RCTCRGHB 25.4517 20.2394 23.3236 WGGGHGGG 12.8471 9.05764 22.7833 DRGGKGCG 8.83649 5.72669 22.5414 AWVYAAYH 26.0577 20.8766 22.3245 AYHGAAWB 17.8603 13.4613 22.1606 CGGNNGCG 6.22521 3.67402 22.1603 GCGRCSGS 3.96651 2.0113 21.8456 RGGMWHYG 32.6796 27.1039 21.8381 ATVWATGH 7.23887 4.48895 21.5128 RGTGMGKK 12.2411 8.62517 21.2582 GARBCVAG 19.3477 14.871 20.9613 TCRRRKYC 18.9952 14.5915 20.4479 GBCWYYGY 32.944 27.5228 19.985 RAYYMCAR 25.5619 20.6101 19.9847 HRAGYDAS 34.6518 29.1487 19.9482 CGCGNGCG 1.99427 0.752302 19.9023 AYAAYNAA 7.7457 4.96476 19.7741 HAGYGABN 32.1067 26.8078 19.1472 GMGYMSCG 8.03217 5.23946 18.7935 GRWAGHDG 32.3711 27.0955 18.7491 DGCGMGCG 2.97488 1.40792 18.3798 ACSNACSS 9.43147 6.42277 18.1349 GTNSGTRH 15.4584 11.6565 17.3926 GGGMSBCG 8.70428 5.85869 17.3389 CCGMABCS 5.92772 3.6228 17.2421 AGKYKGRG 19.7554 15.5416 16.9089 AGWYMGDR 26.6307 21.8736 16.8588 RYCMCCAH 19.8325 15.7099 15.6739 DTTBRTTR 14.1582 10.6277 15.6565 WTKCTWWR 18.9841 14.9456 15.6005 GGHSGBCG 8.3517 5.65607 15.528 WGYGWHTG 15.9652 12.2633 15.1726 TTTTYAAW 5.47598 3.36251 14.8068 GGHARSCR 20.9343 16.7887 14.7924 TSCNTDGY 30.3548 25.5786 14.7096 AAMTVAAS 9.68488 6.82779 14.5168 TCRWYTYC 10.1366 7.24172 14.0009 KRGMAMGR 25.2755 20.8742 13.9949 TCSCWCCB 13.1335 9.84873 13.8587 WCSCCRCC 7.84487 5.32606 13.7266 GCVTGGNB 28.2063 23.6543 13.6619 AAMGGRAA 6.17012 3.96318 13.6026 GVMCYGGM 21.1988 17.1468 13.4571 GACWKRMR 23.3032 19.0925 13.4317 HGGTGRCN 18.4442 14.6337 13.3988 CRGCCHGG 10.0595 7.21118 13.3983 RCSGWGSG 7.96606 5.44452 13.3774 GDKSGHAG 26.4323 22.0995 12.5257 KGGNSGTG 15.26 11.8333 12.497 TDCRRAKY 22.2014 18.1603 12.4756 TBCATWTC 5.11238 3.17546 12.2935 DKRCMAAG 19.8435 16.0238 12.0798 GRAKYRGR 25.6501 21.427 11.912 TAMAATNA 4.42926 2.66405 11.7121 WMGAAWYR 11.9105 8.94059 11.4413 AGSYCAGS 14.9405 11.635 11.36 TGAAHGNA 8.56104 6.05876 11.2684 AKWCRVAY 18.323 14.7531 10.7055 GYGGGCSG 3.58087 2.05162 10.6921 GCCSCDCG 3.86734 2.26986 10.6607 AKGWAGCH 12.814 9.80563 10.4849 TAMVVACA 11.7012 8.83042 10.3834 ATSAAAVY 8.05421 5.68346 10.3211 CGVRCSGG 4.58352 2.83846 10.3007 ATYTRDAA 8.71529 6.26551 9.98252 RGAGAHRG 18.885 15.3572 9.72095 GHTBGGGD 21.8709 18.1217 9.67733 GGCYGKGS 11.7453 8.93983 9.39793 AGTKCHWD 24.1186 20.2642 9.25019 GDGCGMGC 4.14279 2.53525 9.22539 GHVCYMGG 25.8264 21.9593 8.43497 GGSGYGGM 7.97708 5.74101 8.22355 ACRWWHRC 15.4584 12.3639 8.19968 GCWCCGYS 5.17849 3.40797 8.12677 ACVSACAD 15.1609 12.1023 8.10428 GTWVWTAN 13.5192 10.621 8.09539 TAHKTACW 4.21992 2.64595 7.96733 GCAWSCRH 10.9189 8.31725 7.93934 TTTCTTHC 5.7955 3.93048 7.78089 RKCCSYAG 14.2023 11.2644 7.76026 ACCBTGNM 16.9127 13.7416 7.63778 CGWCYHCG 2.80961 1.57902 7.45532 GRASGAGG 7.36007 5.26878 7.32834 GCTNWGGK 18.279 15.0564 7.0356 TGCMTNTR 13.8167 10.9893 6.90749 GCDGSGAY 9.50859 7.15828 6.82321 GCMMMGRG 17.9044 14.7382 6.75809 TRAKTCAN 8.56104 6.3417 6.68898 AGAVKYSR 29.859 26.0021 6.66506 GSAGCGMG 3.64698 2.25132 6.56595 GGGCWGHG 11.1393 8.63205 6.36782 TTGAWMDH 14.7312 11.8708 6.32502 KAMGAMAR 11.3706 8.84848 6.23786 WAKRTRAY 11.1283 8.64871 6.03379 CRRGHTSG 14.61 11.7958 5.94054 GTGSGGYG 3.88938 2.46895 5.92665 GRCAKYGR 10.6545 8.23757 5.90287 WGGBTHGG 13.8497 11.1088 5.89474 AGGBWSGC 11.7893 9.2545 5.84837 AKDGASRA 21.4852 18.1903 5.62374 AABCYAKR 15.5906 12.727 5.57042 TTGWTTRV 6.73204 4.85506 5.3243 ATGBHAAY 7.59145 5.60304 5.17651 AWGYYAYY 16.7034 13.8108 4.96923 AACYMWAA 5.90569 4.17755 4.92036 TWAVWATG 5.68532 3.99847 4.80424 GGTHYCYR 18.2569 15.273 4.7512 AATGKHWA 6.19216 4.43547 4.6631 ARSTMNGT 16.0313 13.2353 4.53692 GKTCHWGG 11.8554 9.42833 4.5083 DTAGBRAR 18.301 15.3523 4.3998 ACTMVADH 23.6117 20.3417 4.37253 AADMCAAS 9.85015 7.64731 4.33077 TAKCAWHK 7.59145 5.66602 4.24958 YGTDGKTS 13.6294 11.0661 4.19689 MRGGKCAS 18.5434 15.6031 4.17432 VTGAGTGV 8.39577 6.37874 4.11262 GRTSGTGR 5.39885 3.80065 4.04603 AWSGAWGR 10.5112 8.28741 3.72799 ATYCRTHC 3.73513 2.44612 3.64899 CBWCGGWK 7.94403 6.01969 3.60696 CGDCSGGS 3.79022 2.49316 3.59651 ATSTAYHT 4.59454 3.15882 3.48918 ARSNTGGA 15.8219 13.1533 3.47485 MTACHKAR 10.6655 8.45009 3.44705 GGNTRCWG 17.9815 15.1654 3.41115 AAMKCAWT 4.0877 2.74647 3.37364 WTTYAWAG 6.26928 4.58275 3.36083 RGCSMGGG 9.67387 7.57351 3.31103 WAMYGTAH 6.1591 4.49308 3.28471 ASHAAGNK 32.6906 29.197 3.20972 AWWCAATG 2.08242 1.17833 3.04094 ACASATAC 1.57558 0.810152 3.01618 WCAGTVAK 9.68488 7.6125 2.96371 CHASGCAD 12.9462 10.5754 2.8341 GVARTBMG 19.8325 16.9724 2.78792 GAGTBACN 7.89996 6.04675 2.72883 ACYTARSR 7.96606 6.10809 2.68862 TVGTWHTK 14.9295 12.4302 2.52899 GCMRRGCK 15.3372 12.8149 2.46018 RGCAYTYG 5.28867 3.80253 2.43995 GCGSGKGC 3.26135 2.12145 2.39288 TTAAMAAA 2.78757 1.74587 2.34446 RGMMAYWG 29.286 26.0468 2.27746 AWGWHGAA 7.18378 5.45446 2.23833 GAGTGVGD 8.14235 6.30107 2.21444 ATSRMTTB 9.91626 7.89782 2.0721 GCAGCGBC 3.22829 2.10997 2.06159 RGAGCTGR 8.85853 6.95142 2.05067 AGCWKCGD 6.84222 5.16965 2.04654 AWTMAAGD 7.26091 5.53728 2.03636 TGAAAHYR 9.0238 7.10329 2.00119 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 0 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete