Motif finder

Task #3645 - 56cf4097

Status Start End Updated Duration Sequences Logs Task Bundle
finished 5 months ago 5 months ago 5 months ago 8 minutes (529sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
TRCSAASN 36.92 19.7748 163.492
STTRGCAN 36.52 19.8661 153.962
GGGHGGRG 15.2 5.21434 140.376
TTSGYAVN 45.24 28.5766 127.644
DCKTMCTB 41.26 26.5539 102.088
GGGGHGGR 12.26 4.39679 101.661
GCCWAGDN 42.64 27.8378 101.084
CKWMCTYN 40.04 25.7764 97.2815
ANVABGAA 42.98 28.5307 94.97
GDGGGHGG 16.48 7.30601 94.2785
AGKWMGHD 41.36 27.2734 92.0429
AAAWMAAA 8.28 3.04281 61.4885
CKWGGCYB 30.5 19.9672 59.7532
GGYVGRGH 32.76 22.1264 56.9326
TTRCDYAA 8.28 3.22704 54.6928
TYGRMTYN 32.82 22.5706 51.8013
CKWMCKGN 33.46 23.1534 51.5719
YHDCKTCS 40.34 29.4022 51.0827
AWWCRAWV 16.3 9.22519 46.0874
GDHCTYRG 32.44 22.8625 44.0778
TRGCWMNG 38.66 28.5828 43.0151
AKCMAMGN 28.7 19.7555 41.8578
CBCBGCCD 27.42 18.7019 41.1414
SCCKGVGS 28.84 20.0852 39.3512
TWCNTDGA 18.7 11.646 37.4676
GYSCSMSG 19.34 12.2417 36.3915
TTRWTYDY 23.46 15.7097 36.0421
GNWCRRWG 36.32 27.2234 34.7943
BCWTTGTN 23.26 15.7577 33.303
CRHCCMCD 18.0 11.4071 32.632
GGWGGDGG 11.7 6.5066 31.5204
TGCMMGSD 33.64 25.1562 30.9668
TCKGHSYY 36.88 28.1553 30.7619
ACDVASVC 36.64 28.0127 30.0153
CCKWMCYB 29.34 21.5003 28.6624
GSHCKGSG 20.36 13.7011 28.2764
AATWMRVA 11.8 6.76273 28.2763
YCCKWMCB 24.42 17.2135 27.999
GBRGGGMG 13.5 8.12919 27.5574
TKYRWWTM 23.26 16.2577 27.4178
CKRCSMSS 29.22 21.5208 27.3752
KNBCTTTG 28.58 21.0857 26.0003
CCBGAGGS 9.9 5.48693 25.3065
AADDMAAY 25.56 18.4846 25.1218
CKRGCWCN 35.06 27.1116 24.9235
CCDCCCCD 10.8 6.23451 24.1591
TTCYMNGW 34.28 26.5204 23.7808
AAWGVRAA 17.0 11.3609 22.3004
WGGGHGGR 17.76 12.0756 21.3997
CKDMCSTV 30.0 22.864 21.3894
TDHGHAAY 20.2 14.1654 21.33
TGWCCHYD 28.68 21.7274 20.8274
TYCSDYCC 19.52 13.6681 20.3733
RNRTGGWK 33.58 26.2935 20.2173
AKBAAAYR 19.26 13.4627 20.1767
TCCNCCTY 12.74 8.03033 20.0428
RVYCBGAG 25.18 18.6961 19.7492
TSAKTSAY 10.56 6.35719 19.1457
YGAMTYNV 28.84 22.0717 19.0836
GGGNNTGG 23.64 17.455 18.5309
AWRAKAAA 10.28 6.17954 18.5012
DSCKRCCR 35.72 28.5624 18.057
GARVYGRG 23.04 17.042 17.4133
ADWCRSAY 19.28 13.8081 16.7436
ACMRTGHS 17.54 12.3514 16.2643
RKCSSYGS 28.7 22.2926 16.173
ASMAWBCA 20.62 15.0975 15.5972
RAWTGHAY 9.74 6.01452 14.6093
RTGRWTDB 27.98 21.8317 14.5858
CGCDMBCG 2.24 0.714581 14.5549
TRGSWYCW 35.06 28.4951 13.9827
GCSARCKN 29.74 23.6266 13.254
CSSAKCCS 8.88 5.45707 12.8273
GRKVGGYG 11.72 7.78226 12.4614
WAWSMACW 20.18 15.1112 11.9573
TCHAVKYC 25.88 20.2564 11.9004
RABCCARM 33.18 27.028 11.8837
RNTGARTB 25.14 19.5907 11.8279
AHYCACWR 17.44 12.7172 11.7855
GDCKWMCK 17.5 12.7787 11.7006
GCKKGCAH 15.58 11.1164 11.6654
WTTGWHCY 15.1 10.7172 11.5297
TGACGWMA 1.98 0.646996 11.158
ACACTGTA 1.74 0.522298 10.9962
AACRAWMV 10.62 7.00335 10.9239
RGAVMTGR 34.44 28.3859 10.7481
WYGTCMMY 14.18 10.0208 10.6028
AKTRTGYA 5.74 3.18625 10.5231
CWCKBCCS 18.12 13.4709 10.368
TATBGCGA 1.0 0.190436 10.2545
RTCACRTG 3.58 1.66693 10.1346
WGGMCYYG 21.36 16.3961 10.048
KCSGYCGB 3.06 1.3345 9.83926
YTKGCATV 16.14 11.7943 9.83156
HABGGWGV 34.56 28.644 9.81742
GMRBCCAG 25.5 20.192 9.7941
GCSCMGHG 10.22 6.78114 9.63742
CCKGMYYS 28.7 23.1728 9.61874
ATATRGCG 1.0 0.197615 9.60184
CBGHCTCN 25.58 20.3137 9.4475
TCCKDSTW 19.42 14.7928 8.96047
TTRMVAAW 14.46 10.4456 8.80707
WDSCKGCC 33.44 27.7507 8.76478
CGCKCSGS 1.74 0.57657 8.40643
KAHARACR 13.06 9.291 8.32253
WTGWMCTH 13.72 9.87506 8.15982
TKAMMTAW 5.98 3.51658 7.98982
TAWYTATN 4.02 2.06762 7.90292
RYTCMASG 14.68 10.7408 7.84469
AAATKADA 4.82 2.65641 7.74261
SCTTWGSS 17.14 12.9189 7.69827
KTWSMTNG 34.62 29.0966 7.39763
CCAMGRNK 28.22 23.0708 7.3428
TCKWHCCB 16.58 12.469 7.31973
CGWMATCR 1.54 0.49205 7.28806
WGMCWAWS 29.1 23.9317 7.10246
ACAATVGN 6.7 4.14543 6.96578
HVGTGACB 13.08 9.46562 6.82034
GATKWCGY 2.0 0.767173 6.79382
GTCMMYWS 21.3 16.7818 6.73647
ACCKVMYY 21.98 17.4332 6.51382
TTRWTTTR 5.54 3.27743 6.42749
TCMMTVWS 32.7 27.4822 6.16999
WCCCCCAC 2.36 1.01059 6.15006
CSSMSGCK 10.14 7.03014 6.10653
GCADAGVB 28.96 23.9714 6.05395
ACGTKAAA 1.28 0.385134 5.77946
CMTCKVCS 14.26 10.6232 5.66888
KRCGCDCG 1.72 0.634533 5.56451
ATGGWRAM 6.2 3.86733 5.3306
AKTHSMTS 28.82 23.9695 5.28373
ATGYAHAY 5.08 3.00167 5.20799
TMCKSWTB 27.14 22.4168 5.14956
TTTTTTTM 4.04 2.22209 5.13971
CTGCVTRS 16.42 12.624 4.96365
TSGYWMGM 15.0 11.3686 4.90685
MRRTCACB 12.58 9.24778 4.88009
ATHDAYTM 7.86 5.2529 4.77786
WCRSATRS 12.78 9.44584 4.67283
RKGGWCMG 10.28 7.29073 4.67182
AYCRYSGA 3.34 1.74751 4.46885
TKYRTWYG 10.38 7.40547 4.38734
AWCSRRTY 7.7 5.1661 4.26233
ACTGAAAA 1.96 0.819591 4.24337
GCSRMGCM 12.26 9.04729 4.20429
CTCCCMCD 8.34 5.71291 4.08415
WRCDKAGY 26.7 22.1874 4.07769
ABWTGAAH 9.44 6.64274 4.03026
ATSTDABC 8.08 5.50293 4.01388
GCAHRCRC 7.64 5.13999 3.99704
ACTMANTC 4.28 2.48935 3.62719
GAHVKAKG 19.54 15.6541 3.49223
GYYMGGKY 20.44 16.4916 3.40676
ARWTACMM 7.56 5.1462 3.19296
GCNCTHRG 20.14 16.2605 3.12813
GACGWMAY 1.98 0.870941 3.10531
TMTYTCTC 6.42 4.21689 3.10104
TTCRGWKH 13.02 9.85431 3.04531
TATKRWTV 6.16 4.01687 2.9664
MCTRGGCB 15.18 11.7888 2.94029
TAKAWAWG 4.12 2.41289 2.89566
ACSACRYV 6.6 4.38654 2.83208
CRGAKRCV 17.52 13.9151 2.8304
TGDWCTCW 11.82 8.82808 2.81873
MBCSKWCS 20.54 16.6964 2.70524
DCKRCCMG 21.26 17.3626 2.69113
GTAYKWMY 8.04 5.59794 2.65787
GRATRKGG 6.4 4.23798 2.65632
CTCANYCN 27.32 23.0289 2.64069
AWHMGYRA 12.92 9.83185 2.53284
WCGCBCSG 1.62 0.663262 2.46083
CACTGTAG 1.58 0.638949 2.44425
AACGTGAW 1.08 0.353778 2.15081
CAGCYCYR 17.26 13.8019 2.02547
AYGRKGYC 8.34 5.91591 2.01796

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

Motif search tool