Task #3645 - 56cf4097 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 8 minutes (529sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TRCSAASN 36.92 19.7748 163.492 STTRGCAN 36.52 19.8661 153.962 GGGHGGRG 15.2 5.21434 140.376 TTSGYAVN 45.24 28.5766 127.644 DCKTMCTB 41.26 26.5539 102.088 GGGGHGGR 12.26 4.39679 101.661 GCCWAGDN 42.64 27.8378 101.084 CKWMCTYN 40.04 25.7764 97.2815 ANVABGAA 42.98 28.5307 94.97 GDGGGHGG 16.48 7.30601 94.2785 AGKWMGHD 41.36 27.2734 92.0429 AAAWMAAA 8.28 3.04281 61.4885 CKWGGCYB 30.5 19.9672 59.7532 GGYVGRGH 32.76 22.1264 56.9326 TTRCDYAA 8.28 3.22704 54.6928 TYGRMTYN 32.82 22.5706 51.8013 CKWMCKGN 33.46 23.1534 51.5719 YHDCKTCS 40.34 29.4022 51.0827 AWWCRAWV 16.3 9.22519 46.0874 GDHCTYRG 32.44 22.8625 44.0778 TRGCWMNG 38.66 28.5828 43.0151 AKCMAMGN 28.7 19.7555 41.8578 CBCBGCCD 27.42 18.7019 41.1414 SCCKGVGS 28.84 20.0852 39.3512 TWCNTDGA 18.7 11.646 37.4676 GYSCSMSG 19.34 12.2417 36.3915 TTRWTYDY 23.46 15.7097 36.0421 GNWCRRWG 36.32 27.2234 34.7943 BCWTTGTN 23.26 15.7577 33.303 CRHCCMCD 18.0 11.4071 32.632 GGWGGDGG 11.7 6.5066 31.5204 TGCMMGSD 33.64 25.1562 30.9668 TCKGHSYY 36.88 28.1553 30.7619 ACDVASVC 36.64 28.0127 30.0153 CCKWMCYB 29.34 21.5003 28.6624 GSHCKGSG 20.36 13.7011 28.2764 AATWMRVA 11.8 6.76273 28.2763 YCCKWMCB 24.42 17.2135 27.999 GBRGGGMG 13.5 8.12919 27.5574 TKYRWWTM 23.26 16.2577 27.4178 CKRCSMSS 29.22 21.5208 27.3752 KNBCTTTG 28.58 21.0857 26.0003 CCBGAGGS 9.9 5.48693 25.3065 AADDMAAY 25.56 18.4846 25.1218 CKRGCWCN 35.06 27.1116 24.9235 CCDCCCCD 10.8 6.23451 24.1591 TTCYMNGW 34.28 26.5204 23.7808 AAWGVRAA 17.0 11.3609 22.3004 WGGGHGGR 17.76 12.0756 21.3997 CKDMCSTV 30.0 22.864 21.3894 TDHGHAAY 20.2 14.1654 21.33 TGWCCHYD 28.68 21.7274 20.8274 TYCSDYCC 19.52 13.6681 20.3733 RNRTGGWK 33.58 26.2935 20.2173 AKBAAAYR 19.26 13.4627 20.1767 TCCNCCTY 12.74 8.03033 20.0428 RVYCBGAG 25.18 18.6961 19.7492 TSAKTSAY 10.56 6.35719 19.1457 YGAMTYNV 28.84 22.0717 19.0836 GGGNNTGG 23.64 17.455 18.5309 AWRAKAAA 10.28 6.17954 18.5012 DSCKRCCR 35.72 28.5624 18.057 GARVYGRG 23.04 17.042 17.4133 ADWCRSAY 19.28 13.8081 16.7436 ACMRTGHS 17.54 12.3514 16.2643 RKCSSYGS 28.7 22.2926 16.173 ASMAWBCA 20.62 15.0975 15.5972 RAWTGHAY 9.74 6.01452 14.6093 RTGRWTDB 27.98 21.8317 14.5858 CGCDMBCG 2.24 0.714581 14.5549 TRGSWYCW 35.06 28.4951 13.9827 GCSARCKN 29.74 23.6266 13.254 CSSAKCCS 8.88 5.45707 12.8273 GRKVGGYG 11.72 7.78226 12.4614 WAWSMACW 20.18 15.1112 11.9573 TCHAVKYC 25.88 20.2564 11.9004 RABCCARM 33.18 27.028 11.8837 RNTGARTB 25.14 19.5907 11.8279 AHYCACWR 17.44 12.7172 11.7855 GDCKWMCK 17.5 12.7787 11.7006 GCKKGCAH 15.58 11.1164 11.6654 WTTGWHCY 15.1 10.7172 11.5297 TGACGWMA 1.98 0.646996 11.158 ACACTGTA 1.74 0.522298 10.9962 AACRAWMV 10.62 7.00335 10.9239 RGAVMTGR 34.44 28.3859 10.7481 WYGTCMMY 14.18 10.0208 10.6028 AKTRTGYA 5.74 3.18625 10.5231 CWCKBCCS 18.12 13.4709 10.368 TATBGCGA 1.0 0.190436 10.2545 RTCACRTG 3.58 1.66693 10.1346 WGGMCYYG 21.36 16.3961 10.048 KCSGYCGB 3.06 1.3345 9.83926 YTKGCATV 16.14 11.7943 9.83156 HABGGWGV 34.56 28.644 9.81742 GMRBCCAG 25.5 20.192 9.7941 GCSCMGHG 10.22 6.78114 9.63742 CCKGMYYS 28.7 23.1728 9.61874 ATATRGCG 1.0 0.197615 9.60184 CBGHCTCN 25.58 20.3137 9.4475 TCCKDSTW 19.42 14.7928 8.96047 TTRMVAAW 14.46 10.4456 8.80707 WDSCKGCC 33.44 27.7507 8.76478 CGCKCSGS 1.74 0.57657 8.40643 KAHARACR 13.06 9.291 8.32253 WTGWMCTH 13.72 9.87506 8.15982 TKAMMTAW 5.98 3.51658 7.98982 TAWYTATN 4.02 2.06762 7.90292 RYTCMASG 14.68 10.7408 7.84469 AAATKADA 4.82 2.65641 7.74261 SCTTWGSS 17.14 12.9189 7.69827 KTWSMTNG 34.62 29.0966 7.39763 CCAMGRNK 28.22 23.0708 7.3428 TCKWHCCB 16.58 12.469 7.31973 CGWMATCR 1.54 0.49205 7.28806 WGMCWAWS 29.1 23.9317 7.10246 ACAATVGN 6.7 4.14543 6.96578 HVGTGACB 13.08 9.46562 6.82034 GATKWCGY 2.0 0.767173 6.79382 GTCMMYWS 21.3 16.7818 6.73647 ACCKVMYY 21.98 17.4332 6.51382 TTRWTTTR 5.54 3.27743 6.42749 TCMMTVWS 32.7 27.4822 6.16999 WCCCCCAC 2.36 1.01059 6.15006 CSSMSGCK 10.14 7.03014 6.10653 GCADAGVB 28.96 23.9714 6.05395 ACGTKAAA 1.28 0.385134 5.77946 CMTCKVCS 14.26 10.6232 5.66888 KRCGCDCG 1.72 0.634533 5.56451 ATGGWRAM 6.2 3.86733 5.3306 AKTHSMTS 28.82 23.9695 5.28373 ATGYAHAY 5.08 3.00167 5.20799 TMCKSWTB 27.14 22.4168 5.14956 TTTTTTTM 4.04 2.22209 5.13971 CTGCVTRS 16.42 12.624 4.96365 TSGYWMGM 15.0 11.3686 4.90685 MRRTCACB 12.58 9.24778 4.88009 ATHDAYTM 7.86 5.2529 4.77786 WCRSATRS 12.78 9.44584 4.67283 RKGGWCMG 10.28 7.29073 4.67182 AYCRYSGA 3.34 1.74751 4.46885 TKYRTWYG 10.38 7.40547 4.38734 AWCSRRTY 7.7 5.1661 4.26233 ACTGAAAA 1.96 0.819591 4.24337 GCSRMGCM 12.26 9.04729 4.20429 CTCCCMCD 8.34 5.71291 4.08415 WRCDKAGY 26.7 22.1874 4.07769 ABWTGAAH 9.44 6.64274 4.03026 ATSTDABC 8.08 5.50293 4.01388 GCAHRCRC 7.64 5.13999 3.99704 ACTMANTC 4.28 2.48935 3.62719 GAHVKAKG 19.54 15.6541 3.49223 GYYMGGKY 20.44 16.4916 3.40676 ARWTACMM 7.56 5.1462 3.19296 GCNCTHRG 20.14 16.2605 3.12813 GACGWMAY 1.98 0.870941 3.10531 TMTYTCTC 6.42 4.21689 3.10104 TTCRGWKH 13.02 9.85431 3.04531 TATKRWTV 6.16 4.01687 2.9664 MCTRGGCB 15.18 11.7888 2.94029 TAKAWAWG 4.12 2.41289 2.89566 ACSACRYV 6.6 4.38654 2.83208 CRGAKRCV 17.52 13.9151 2.8304 TGDWCTCW 11.82 8.82808 2.81873 MBCSKWCS 20.54 16.6964 2.70524 DCKRCCMG 21.26 17.3626 2.69113 GTAYKWMY 8.04 5.59794 2.65787 GRATRKGG 6.4 4.23798 2.65632 CTCANYCN 27.32 23.0289 2.64069 AWHMGYRA 12.92 9.83185 2.53284 WCGCBCSG 1.62 0.663262 2.46083 CACTGTAG 1.58 0.638949 2.44425 AACGTGAW 1.08 0.353778 2.15081 CAGCYCYR 17.26 13.8019 2.02547 AYGRKGYC 8.34 5.91591 2.01796 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete