Task #3340 - df737c96 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 45 minutes (2758sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TRTTKACW 39.0697 9.80875 1500.0 GTAAAYAN 32.6206 8.38251 1177.49 GTTKACHY 27.5853 9.79918 631.416 GTCRAYAN 18.5095 6.03039 457.066 TTKAYTTW 23.475 9.95013 385.035 TMAAYAHG 19.8185 8.35903 320.415 TTTGYTTW 17.9073 7.30681 304.704 AAYMAAYA 21.0228 9.65303 287.496 TGAMCTYD 18.492 8.4679 250.314 AARCAARC 14.3555 5.79616 243.906 TRTYKAYC 16.066 7.11585 229.893 RAGKTCAV 18.5793 9.00309 221.32 KNACTTWG 19.5654 9.74003 219.861 GGGHGGRG 11.6066 4.4652 211.742 GRGGHRGG 19.4083 9.77369 211.45 ATTKAYHT 17.6892 8.61865 206.509 TAMWTADY 18.4135 9.84288 170.391 ATMRAYAW 15.5249 7.79829 166.022 AAAVAAAA 15.6645 7.93258 164.26 GACHTTGN 15.106 7.71564 154.124 WTGTWTGY 14.1897 7.26901 143.092 GGRSGHGG 11.5193 5.49396 136.279 TRWTTGCW 14.085 7.49521 128.185 TRKGTAHA 15.394 8.50192 127.071 AGKTCADR 16.7903 9.5745 126.971 RGRCWGAG 16.9474 9.96443 116.252 TTRCDTAD 12.104 6.33659 113.502 AAAMAAAK 14.7919 8.52251 106.801 TTGYTTTK 13.3258 7.40326 106.651 GTYKACAR 10.5594 5.42738 103.325 GGYDGRGG 15.874 9.4715 102.851 AAWTMAAM 14.4341 8.38403 101.295 GKHCAARG 15.6471 9.33533 101.252 ACYTTGDM 15.2195 9.148 95.3568 TCRAYADY 14.8093 8.89611 93.0727 GRMCTCNG 15.2631 9.31403 91.0243 AGKTCABY 13.6487 8.10026 88.7404 AAGRHAAA 13.7097 8.18873 87.2493 CKCSYDCS 15.2544 9.47555 84.8695 RAGGVCRG 14.7133 9.07283 84.1727 RTACRYAN 15.3417 9.61135 82.6946 GRGAYRGR 14.5301 9.0087 81.3744 RSGCASGV 15.3155 9.66724 80.5713 TTKYTTTC 11.5193 6.66857 80.2763 RCTCRSTV 14.9577 9.43597 78.6745 GCCYBRGC 12.7149 7.63588 78.5655 TGSMCTTK 13.5178 8.28725 78.3836 TAAWCADY 15.3766 9.79691 78.0277 CAAACAAV 10.2278 5.74401 77.8287 GVASGHAG 15.0188 9.54462 76.7941 GYVCTBGG 14.4777 9.16281 74.9638 TAVAYAKA 12.7847 7.81751 74.4956 TNRCTMAG 14.914 9.58633 72.8429 AGGVCAGM 12.6364 7.7904 71.4081 TTAWYTTD 15.1322 9.87417 69.585 ARAYAAGR 13.1949 8.3196 68.7623 CRCCVCCV 10.0358 5.84048 68.2139 ACWTAGHN 14.5126 9.44491 67.1985 GGTCRBNG 12.6887 7.97099 66.8633 GRCRGRGY 14.2421 9.25867 66.1315 CSMKCMCK 14.4253 9.40445 65.8623 AYCSYABC 11.0306 6.68606 65.6583 KMCCTTYS 14.9664 9.89141 65.1283 AWTCVATB 10.4023 6.22094 64.6759 AACAAARM 11.4931 7.16408 61.9477 AAAMWGAA 10.9695 6.7514 61.7942 GCRWRCRS 13.797 9.03791 61.4692 MTSGRATB 14.3381 9.52236 60.8468 ASTGAGYH 13.4479 8.81702 59.9717 AAVWGAAA 14.5475 9.737 59.7367 CTTRGCWB 14.2421 9.52615 58.5445 TCNGCBTC 10.0358 6.14277 57.4074 WGMGRCVG 13.9628 9.38228 56.1389 AGCCMVGS 14.5737 9.89577 56.0866 TTDAYTSA 13.5788 9.10948 54.8648 TRGRRTTR 12.776 8.45098 54.6504 GRGYTVGG 10.0271 6.22347 54.5144 CCDCCCSD 11.1354 7.14064 53.6906 CRGCSTSS 11.3186 7.31744 52.8653 GAAYKSAH 13.0989 8.80582 52.288 AARTMCAH 13.893 9.47659 52.1334 TSCSTVCS 11.1441 7.21175 51.3768 YCSTWCSB 12.9331 8.71318 50.6336 TRCKTTGN 12.5753 8.46153 49.8468 KYACTVTG 13.605 9.33569 49.5588 TTGACABW 10.2889 6.59539 49.4823 ACVCVCAC 10.4198 6.71131 49.1918 GCCMGSCB 11.3273 7.45852 49.0314 RAWKAAMG 13.1512 9.03208 47.5877 CSWGCSTK 13.0029 8.90755 47.5789 GYRSGHGG 12.0255 8.09271 47.4996 TRTGTAYB 10.0183 6.44483 47.4468 RGCSTDSG 11.5193 7.70256 46.6966 CWMKGTHG 13.8406 9.72589 44.9503 GGRSHTGG 14.0588 9.92306 44.699 TSMDTTCS 13.2734 9.2541 44.6938 AKARTHAA 13.0901 9.10209 44.6118 CKCACTVN 13.6487 9.57847 44.5706 RTTNATTS 12.1127 8.28323 44.4782 ATKAMCYW 11.8073 8.03559 44.2689 AWGMAAAK 12.1477 8.33855 43.8296 GCRDMGGY 10.0271 6.58552 43.6184 TGGMYTCD 13.3694 9.39485 43.3032 TWACCTWN 10.9434 7.35883 43.1495 DACTYAGR 10.6292 7.11402 42.736 TTARRAAW 11.3448 7.74819 41.7525 AGAMHGRA 13.0552 9.22145 41.1258 SGCWYSGB 12.4618 8.73006 40.8009 AACAAGVH 13.797 9.92443 39.6563 TVCSWAGY 11.4582 7.93283 39.5624 AGDCCANG 12.8458 9.11465 39.4934 ATMRAYAS 11.8509 8.29733 38.7997 AVHTAASC 11.2837 7.82118 38.7104 WDCSAAMG 11.4233 7.94645 38.5353 CRGGNCMG 12.4182 8.79439 38.477 RGCMCTBG 12.0168 8.45512 38.4098 TAARYACH 13.6487 9.86639 38.1595 CCTTWSCB 11.0481 7.646 38.1483 AATRNAAA 12.8807 9.21262 37.9883 AHCKTTGD 12.8109 9.17882 37.4186 GRGCAMHG 11.8509 8.36701 37.2021 ATSRMTBA 13.6225 9.9032 36.9134 KACRKANG 12.4269 8.87801 36.7897 SGYRGYGS 10.4896 7.23321 36.7726 TTSGYTTB 11.4495 8.05361 36.5609 TAARAMWA 10.9521 7.65149 36.1047 RGCVAKCS 12.6625 9.11577 36.03 CDGGGCTV 12.0866 8.62715 35.8956 KCCKCCCN 12.3222 8.83305 35.8145 TGYCTYWG 13.0029 9.42789 35.6428 CCKKGCTB 13.3432 9.75479 34.987 ATTKACHM 12.296 8.85206 34.926 TKTAATYH 11.9382 8.55508 34.6993 TYKGTADA 11.3797 8.0797 34.6385 TGTSBGTG 10.4547 7.29868 34.5254 AMGRWMGR 12.0778 8.66537 34.3989 DAHGCAAK 10.7339 7.54136 34.3839 WCSSAGCD 11.6764 8.33121 34.1838 AARRATBA 13.4741 9.93702 33.6233 AWSRTKAA 11.3622 8.11411 33.5581 TGAMCTRD 11.7637 8.45901 33.5476 GAYTDCRK 11.4844 8.25817 32.7166 ACAKTGMH 13.2647 9.82606 32.2209 TNCWTTTC 11.0394 7.90324 32.1416 ACTMAGVM 10.699 7.62959 31.762 GCACDBRC 11.179 8.05142 31.5399 GSAYVGKG 12.872 9.52256 31.4563 AAWTMGHW 10.9695 7.87834 31.3963 AGGGHBAG 11.2401 8.13715 30.849 ARWCSAAM 11.0219 7.9822 30.1669 TTBGTTSW 12.3833 9.13914 30.0882 TACMCARB 13.2385 9.92386 29.941 RTKCYASG 10.3761 7.43968 29.9092 AGKGMAVG 11.5542 8.47549 29.5026 TBAMTGAR 12.2262 9.06378 29.4374 GRAGHCVG 12.1127 8.98408 29.0684 TCCBVWCC 11.8422 8.75036 29.0256 TGVMCTYC 12.6014 9.42208 28.875 GTAGMYVR 10.7252 7.79947 28.6731 WCCMVCCC 10.9434 8.00629 28.3081 GGAWVGAH 10.7077 7.81018 28.1539 KRWCTAYR 11.9382 8.92157 27.3773 AGACHKKG 12.7673 9.65827 27.2372 ACKWYGNT 10.2365 7.45038 27.2076 TGYCCTSK 11.8073 8.83293 26.8969 ATCBDYCT 10.3849 7.59632 26.8534 TKACWTTY 11.3448 8.45038 26.485 ACADACRS 12.7062 9.65043 26.4263 AAAYATKR 12.7934 9.73081 26.3705 AKABARAC 12.3222 9.32797 26.1354 GGRWGHGG 11.72 8.81749 25.7858 CWVGRACK 12.2786 9.30944 25.7848 TCWCTKYC 11.7637 8.86219 25.672 GMAATCVN 12.6276 9.62517 25.661 GMSAAMGR 10.5419 7.80728 25.4103 CTTDGWTS 10.2714 7.58284 25.2039 SCTRAGCN 12.872 9.88122 24.9948 CTKKGTAR 10.2976 7.62342 24.8655 AADGASAA 10.0096 7.37432 24.8435 TABCTDRG 10.891 8.14356 24.8233 GASYTSGM 10.2539 7.59001 24.7795 CCBMRCCK 10.7077 8.01761 24.1957 CKTAWCYN 10.1754 7.55352 24.18 AKGCRHRC 11.3186 8.55663 24.1473 TGTNYGTM 12.4967 9.59927 24.1369 AABAWCWA 11.5542 8.76683 24.1026 TBGCWMYG 12.7149 9.80229 23.9886 AGBAMGHA 11.6241 8.83664 23.9612 TTGDGMAA 10.1143 7.51312 23.9407 GWSSTKAG 11.0394 8.33226 23.772 GGTKARNG 10.3936 7.78111 23.4976 GCVKGGCV 10.9346 8.2588 23.4438 GCCNMGKG 10.0358 7.47802 23.3226 KCBTCCKG 10.0009 7.45539 23.1786 AGAAWTSV 11.0394 8.38328 22.883 CCWCCMTS 10.158 7.62832 22.5345 ACRGAGHM 12.3746 9.55542 22.4772 RAGTSCWG 10.8125 8.20688 22.4758 TTTYTAAD 10.5681 7.99938 22.3425 CACVYRCS 11.9033 9.18637 22.2539 TCRKTDWC 11.8771 9.13641 22.098 TCKTYCMW 12.1477 9.41709 22.0444 AGCCWRGW 12.0429 9.32571 22.0126 WRTCAYTR 12.5927 9.83479 21.7323 TSGTWTKK 11.7724 9.10616 21.6683 ARTKAATN 10.0358 7.58448 21.4172 TGSGYRBG 11.1266 8.5499 21.3803 GWTBGYWC 11.8422 9.1869 21.3733 AGASDWAG 11.1528 8.5791 21.2826 CKGAGCBB 11.0394 8.50152 20.906 WAGMWATS 10.2016 7.76529 20.8193 TGTMCYTK 10.1929 7.76192 20.746 TKCDTAWY 11.0917 8.59512 20.1522 TACRGWKH 12.3309 9.71133 20.0412 AVATGSAM 11.6328 9.09081 19.9558 GWTCTYDG 10.2801 7.89469 19.8221 ADTMGHTR 11.6502 9.12594 19.6587 RTYBACYG 11.5019 9.0041 19.4913 WWGGMAMG 11.4844 9.01332 19.1164 TGAMCCYD 10.7252 8.33703 19.0771 GCTYAGVR 10.3761 8.02715 19.0624 RGRWMGAG 11.7375 9.24461 19.0544 AYTKMAAA 11.4146 8.97473 18.7578 AASYCWAA 10.0096 7.73392 18.5468 AYCTYASY 10.6205 8.30665 18.1092 RYCACSRY 10.6728 8.35949 18.0186 KGWTGTTK 11.9557 9.51682 17.9615 TGRVATCV 11.8771 9.44944 17.9116 VCTSGGCV 11.4059 9.03485 17.7647 TTBAHTYG 11.5193 9.14093 17.7094 GARSYTSG 11.1703 8.82743 17.6984 RCRWATAH 10.9085 8.6015 17.5626 AVRAAAAC 11.2488 8.93311 17.1974 TVGAAYKY 11.083 8.743 17.1549 AATWMRGW 10.4372 8.20939 17.1125 GVMGMASG 11.72 9.36869 17.0575 AACANTGM 10.158 7.98295 16.7618 THCAAAGV 11.3186 9.03104 16.708 WGAGCDAR 11.1615 8.89221 16.6659 CTCSGBSN 10.411 8.22042 16.609 GTYCMYRG 12.1477 9.79275 16.5664 GGMMGHMG 10.603 8.39652 16.5583 CTTCSSWB 11.9033 9.57722 16.4814 GWCYMWGC 11.7986 9.4906 16.3688 WATGWARY 10.6903 8.49766 16.239 ACYGWAKV 10.3936 8.23112 16.2304 ATRMGRWM 11.755 9.4251 16.0639 TSGCTTNS 10.7339 8.55765 15.9514 MCCBYTCS 11.9295 9.65476 15.7734 GSRATKAV 11.5542 9.32036 15.684 MGMTRSGS 10.7077 8.55356 15.6822 GGKTCRKD 10.8648 8.70048 15.6152 TVRCTCRY 10.1318 8.04283 15.5613 KSYGTTYG 12.0866 9.81723 15.5244 TKRRGACR 10.699 8.56167 15.4639 ARVCACYG 11.7026 9.47595 15.4145 CATVCVTK 10.2016 8.12211 15.3325 TCKHMCTM 10.219 8.09792 15.252 TGRCAKWG 10.7776 8.65433 15.173 TCVMSGVC 11.5019 9.32147 15.0507 GGDCAGMY 11.9469 9.72773 15.0444 TRRGTYAS 11.4321 9.26697 14.9345 GAHRGGAR 11.659 9.48019 14.8523 GSAGGHGM 10.8648 8.75794 14.8487 ATRWARTW 10.7426 8.66553 14.6068 CTCWGTGB 11.4582 9.31693 14.6026 DAGACCDK 11.0132 8.91335 14.5806 WCCTGGRM 11.3535 9.22868 14.5113 ARTRYTTG 10.4808 8.43544 14.5097 AARGGMAW 11.4408 9.31516 14.4248 TSYATGYK 11.2663 9.16703 14.2859 GWKSGGBG 10.158 8.16642 14.1987 WYCVAGGC 10.0969 8.11332 14.1692 TGTSMMCK 12.1389 9.97924 14.1141 CDWCSMCS 10.0707 8.10119 14.0163 AGWTVGYW 11.72 9.60393 14.0113 CCANCTCD 11.8509 9.72444 14.0037 CAGWGCNG 10.0358 8.07651 13.925 AKRTMCAM 10.8212 8.79778 13.8281 ASCKASTN 11.1877 9.13973 13.735 GCRGMSVG 11.4582 9.39517 13.6374 ATYHGWAY 10.0183 8.08337 13.629 TTKCDTYA 10.0881 8.14746 13.6195 TSSCTGKC 10.1492 8.21189 13.5045 TTRWYTAR 11.7986 9.72069 13.4761 CACTGKGD 10.0532 8.12828 13.4584 AGAMGVDA 11.8073 9.74792 13.251 CKGGCABS 10.0271 8.12193 13.2358 AGGAKSSR 11.275 9.26563 13.1785 GBCTTTGD 11.0306 9.05426 13.0301 RGYKACAK 11.3448 9.34321 13.018 ACDCRWRC 11.2401 9.25132 12.969 ACRGADHG 11.755 9.73383 12.8577 TCDKTGCY 10.7252 8.80158 12.7088 AAMTKARY 11.9644 9.94 12.7067 AGKRYAAA 10.4721 8.57925 12.5988 TAKWTMAM 10.0096 8.16956 12.4447 AWCYAWRA 11.2488 9.31625 12.3097 WWCSWAMC 11.467 9.46487 12.1994 RWAATKAK 11.3622 9.4344 12.1543 RCCAMTGH 10.5507 8.69059 12.132 GBBGGCMG 10.2976 8.45885 12.1309 BACTGAAN 10.5158 8.66056 12.1091 TTRNAATY 10.7339 8.87123 11.9877 AAYYCWAK 10.1056 8.30471 11.8762 RCTMACSN 10.7252 8.87831 11.8154 CRCKDCCB 11.2313 9.28415 11.7825 ACAAKSHA 11.3797 9.48449 11.7766 TTSGSAKK 10.4023 8.59262 11.6912 GYTCYGDG 11.0394 9.19132 11.5489 TCMCCMDC 10.1143 8.34677 11.4799 RCCKTSCB 10.795 8.98284 11.3644 ACTRTGVM 10.3063 8.53437 11.3508 GRRCMTWG 10.5856 8.7984 11.2707 TTTBGHAA 11.1266 9.30028 11.239 CYRSGCAS 10.7863 8.98681 11.2324 ARGACADK 11.7986 9.92703 11.1866 GACMYAGD 10.2539 8.50418 11.149 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 11 Minimum motif score 10 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 10 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 0 Maximum score in the contrast set of sequences 0 Unsupported param 0 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 0 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete