Task #1034 - 43dd94af Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 4 years ago 4 years ago 4 years ago 4 minutes (292sec) Positive, Negative Float, Integer, Open Results Motif positions Motif Occurrence(%) Expected(%) -log10(Binomial prob) TAGANTTG 60.54 1.46624 8216.11 AANTCTAN 61.8 5.73774 4882.87 AGANTTGN 61.73 5.73774 4872.91 ANTCTANN 67.32 21.057 2148.29 GANTTGNN 67.24 21.057 2141.13 DTCTADND 49.93 32.9098 269.714 ABTTGNHH 48.6 32.9098 230.271 NTCTACNN 31.99 21.057 142.762 TCTANTNN 31.78 21.057 137.631 ANTTGNGN 31.32 21.057 126.703 TCTANVGN 24.3 16.2481 94.4912 ANTTGNHG 24.11 16.2481 90.3774 GVHTAGAN 19.33 12.451 84.5589 AATTGNHH 18.14 12.451 59.5904 CTCTADBD 14.01 9.49105 47.6095 TCTAGSHN 12.59 8.48244 43.5202 RTTGVDMD 37.79 32.9098 24.9777 CTAHYBSD 37.59 32.9098 23.1573 TTGNGVDD 37.57 32.9098 22.9793 YMBBCAAD 37.33 32.9098 20.9013 TTGRHDMB 37.31 32.9098 20.733 CTAMRVVV 36.86 32.9098 17.142 YTTGNKMV 33.44 29.8653 15.0396 TTGYYRAN 13.42 11.1475 12.6426 CTSTAWAD 5.84 4.3348 12.5115 TTGVWBKH 36.08 32.9098 11.8138 GTWWAGAN 7.25 5.73774 10.324 GSSHMTAG 10.22 8.48244 9.8507 TTGNYHCA 10.16 8.48244 9.32257 GYNTCAAY 7.14 5.73774 9.16536 ADWYWTAG 10.12 8.48244 8.97999 AATNNAAA 7.11 5.73774 8.86306 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 8 Minimum motif score 35 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 5 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 0 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 0 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 0 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 0 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete