Motif finder

Task #3359 - e4904538

Status Start End Updated Duration Sequences Logs Task Bundle
finished 2 months ago 2 months ago 2 months ago 19 minutes (1158sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
CSCCRCCS 9.34379 3.31107 85.9987
TYRTTDWY 9.12981 3.44543 74.5356
TCACSYSA 12.5178 5.6622 73.2678
GCGWGCGN 5.77746 1.8393 59.1661
CCRCCVCB 16.9401 9.46142 58.0336
AVGGMMAR 22.2004 13.6585 57.3844
GRGKYRGG 22.0399 13.6696 54.8977
CGCACGCR 3.19187 0.651527 54.4717
TYGHYNTY 24.8395 16.2977 50.0156
GGYGGSGH 12.5535 6.54038 49.8066
ACRTACAC 5.63481 1.98914 47.8291
RGDCAAVG 14.6041 8.19108 47.1684
TGTAYGTG 6.56205 2.61539 44.9206
GRCMAMGN 18.6698 11.5213 44.7119
GVVCKTKG 24.3224 16.3289 43.0591
HVRACAAV 17.8852 11.0128 42.5694
CGCYYNCG 7.18616 3.0798 42.4802
GGCBAGCK 8.38088 3.97074 39.6191
NAAYAAVN 18.4914 11.7228 38.9724
AGARCTGG 6.38374 2.67267 38.7626
CGTGCGYR 3.51284 1.01289 38.2755
ATACRNAC 7.11484 3.16528 38.1805
RASNTGGM 28.6555 20.647 35.9695
ACWCRTAC 5.99144 2.5211 35.3335
TGRMYTTK 12.4643 7.15567 34.9943
RGWGRMAR 35.6812 27.2242 33.6339
CGCYSCGV 6.4194 2.90002 32.0985
GSTSGCCS 9.98573 5.48924 30.6818
AGCTCTMC 5.59914 2.41096 30.5301
CGDMSCSG 5.90228 2.63098 29.8231
VTCACCYV 23.2168 16.4609 28.7859
TTVTTNSY 15.2104 9.82659 26.7333
GCGRCGVB 6.40157 3.12546 25.3354
RGGYAGRG 16.6726 11.1523 25.1155
AWRWYRAW 9.57561 5.46572 24.8734
WCCKHVCC 24.0014 17.5214 24.5143
GGGCNAGC 7.59629 4.03163 23.9956
ACATGCAC 6.54422 3.29101 23.6466
ATGTWYGT 3.12054 1.08633 23.0922
YTSGCTYD 15.8345 10.6443 22.4984
SVTCACCB 20.3103 14.6068 20.8853
GRYRABSG 19.0442 13.5779 20.073
RHTSGCTH 17.368 12.1889 19.4211
CGDYMDCG 6.27675 3.2902 19.0814
AAMBSDAA 7.81027 4.4462 18.6456
WGCGMKCG 3.31669 1.31007 18.5707
CTCCDCCS 9.78959 5.99042 18.4278
TRGCCCYR 10.3424 6.4364 18.3071
DRRCCAMG 15.781 10.9586 17.9196
ARRGYRGG 19.7575 14.4241 17.606
TYRGRMRA 13.3024 8.89828 17.6009
RSCKTKGS 22.3966 16.7764 17.4228
KCGCYVCG 4.76106 2.29704 17.1862
GAVAACWK 8.41655 4.99879 17.0164
TATGHATG 3.58417 1.52602 16.8399
CCKMSTCS 11.0021 7.0974 16.3349
GRCYCYGR 16.2447 11.4913 16.3123
RCSAATSR 6.52639 3.61348 16.0341
CCAHSTYK 15.9772 11.318 15.6666
ACGTSACB 3.92297 1.80021 15.1839
GTKCGYGC 4.35093 2.09553 15.0265
GATTSGHY 3.90514 1.79967 14.8504
GGGGHYVG 14.3367 9.99799 14.7135
AAWBADWA 5.88445 3.2051 14.6428
TGTKCGTG 4.65407 2.34058 14.1364
TCTDHMTY 18.4736 13.64 14.0531
TTKAHWWA 3.24536 1.39324 14.0335
ACACGCAC 3.61983 1.64732 13.7347
AGAHAAVH 9.34379 5.95641 13.3841
RCCACCRM 8.5592 5.33173 13.3362
TTRYYYDG 19.6327 14.7503 13.2136
ASKTKGDA 10.9486 7.28464 13.1184
ACGCABAC 4.81455 2.4986 13.0737
TCWCCWNC 22.6997 17.5372 12.8697
ARARYTDA 8.27389 5.14387 12.7276
CAGGMDAG 12.0899 8.27025 12.6597
RRWMRATR 14.6933 10.5043 12.4229
RRHCGYCG 4.19044 2.08946 12.2857
GANRGYGG 13.7839 9.73751 12.2747
ARKMRARC 16.6191 12.2028 12.1386
CGSKHCGD 5.63481 3.14432 12.0802
CGRDCGRB 5.3495 2.93722 11.9854
AWDTHYAA 5.88445 3.34744 11.7661
TATGTKYG 6.31241 3.67595 11.6952
TKTRTATG 6.61555 3.90854 11.6934
GGWCRGNK 22.7532 17.7508 11.4505
AHARTRGA 6.4729 3.83625 11.0297
CSAATCRV 3.90514 1.95331 10.6917
GTCACGTG 2.26462 0.878906 10.5228
ATATAVAY 2.06847 0.76814 10.2663
TTWWGWAA 1.85449 0.644615 10.2572
AVGGTCRK 7.18616 4.44204 10.2104
RCSGMCGR 3.61983 1.78439 9.93208
GCSSGHCG 3.83381 1.94032 9.77387
TACRVACA 8.1669 5.2792 9.41737
TYHAGTTY 4.36876 2.34542 9.27433
GGYGGRSG 8.14907 5.27505 9.27147
TVACBTRG 10.4137 7.16183 9.03196
RKTBGTMR 11.4658 8.06924 8.80787
CGWBTNCG 4.60057 2.53988 8.76214
CCRCCSAS 8.64836 5.72425 8.69088
GVRASAAN 21.2375 16.7158 8.64258
TACRTAYA 1.81883 0.661579 8.58031
GAKAKCTR 7.40014 4.72965 8.42613
RRVTCACS 16.2803 12.2906 8.42495
GGHWGSGG 13.2846 9.67781 8.3026
WRRCGRCG 3.47718 1.75118 8.25959
GCCCMSGB 12.6427 9.12723 8.25881
TGCGCDTG 3.81598 2.00442 7.96432
GRCWRGGC 12.3752 8.96078 7.59248
TGRMAAHG 7.16833 4.60083 7.5908
AAMTCRYT 2.49643 1.11313 7.46543
GAAAATCR 1.08773 0.289822 7.4338
AGDTSAAD 8.02425 5.3126 7.36213
KCGSKCGK 4.56491 2.58607 7.31403
GASYTGAM 6.61555 4.17974 7.26921
GCGGGGMY 3.70899 1.95969 7.23619
CTGCCCMK 10.6277 7.51557 7.03702
AGCSAGSC 7.1505 4.62926 6.98105
TNGKCAAV 9.57561 6.64477 6.82027
GAMTWTGG 2.51427 1.14688 6.79906
TCAARGYC 3.28103 1.67449 6.76297
AYAGAYAD 6.88302 4.43182 6.71932
RGRACAGR 11.8759 8.62837 6.58368
RAYGAMDK 12.393 9.0867 6.47759
GVCBTCGG 4.36876 2.48962 6.337
TRGGYRGS 17.3859 13.5326 6.22781
WVTCACCH 18.4736 14.5539 5.91392
CGMGCSCG 1.97932 0.832645 5.75695
AMAAWSAC 5.09986 3.08253 5.74001
WAAKYWAG 3.70899 2.03383 5.63793
ACTGAAAA 1.01641 0.283154 5.57482
ATDDYAAC 4.24394 2.4387 5.5218
TSRGKTCR 8.64836 5.97978 5.49337
WTADTTMR 2.38944 1.11275 5.36855
WSTTSTCC 7.07917 4.69893 5.24539
AANAGDAA 4.99287 3.03087 5.21722
ATKCRTAC 2.24679 1.02872 5.0438
TSGCTWVB 14.7825 11.3571 4.94905
TYRAYGAH 3.76248 2.10776 4.9427
GCTCSGCS 3.47718 1.89723 4.93639
DGCCACCD 13.0884 9.85939 4.92744
WHCTYKTC 9.9679 7.15036 4.91107
YACCACCR 4.9572 3.02384 4.87713
ACGCATGC 1.85449 0.784368 4.70804
RGGCTVSG 12.1612 9.07519 4.65711
TYMCKWHC 15.2104 11.7884 4.54237
WGCCMMGG 11.6619 8.65572 4.50095
GCGCKYGC 3.13837 1.67224 4.46775
GRRDAMGG 15.5136 12.1036 4.19361
ACBTGAWH 6.34807 4.18574 4.13326
AATWTGGC 1.21255 0.413977 4.09562
AYCGDAMG 1.96148 0.872706 4.07815
RGVAASAG 15.2461 11.8854 4.01995
GARGCCRD 11.9829 8.99267 3.98344
GMYTCGGB 5.20685 3.28001 3.94688
CCRGVTCS 9.14765 6.54482 3.90957
AWTVDTTR 4.52924 2.7503 3.89535
GCCSCRMG 5.43866 3.47078 3.85917
TNRGGTDG 14.194 10.9833 3.70183
CSTCGSYS 6.99001 4.74872 3.68253
TCYKGMYY 25.5528 21.4226 3.64329
TAGARHTR 4.49358 2.73968 3.61475
ATBRAMDA 5.93795 3.90226 3.45919
CGTRACGS 1.28388 0.46932 3.43688
WGAAAATC 1.1234 0.378112 3.42651
RYCAMCAG 10.4672 7.74382 3.29194
TCKDMCCY 12.607 9.62675 3.24835
AVGCSCCG 2.92439 1.57721 3.15873
AYGCGCAC 2.40728 1.21245 3.04554
TGWTRATG 3.58417 2.0754 3.00677
CKTKGDAV 13.4986 10.4594 2.91839
GRWYGAAS 4.49358 2.79219 2.78073
ARGCSRGG 8.2204 5.87461 2.64452
ATTKTTSA 1.24822 0.467407 2.63415
GAMARRCR 9.73609 7.18543 2.56914
AYATRTAC 2.54993 1.33469 2.54275
TWAYCBWA 2.67475 1.42933 2.43623
RAHCCCMG 7.25749 5.07868 2.4341
TYDWAGTW 3.2632 1.87021 2.31617
TTTAHTYN 3.29886 1.89885 2.28322
RHTCKKGG 11.7511 8.9937 2.19875
CAGRGTCR 5.11769 3.3345 2.13969
TYATSACC 2.99572 1.68054 2.11396
AAKBGRAW 6.63338 4.58616 2.08264

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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