Motif finder

Task #3638 - 3b3bae2a

Status Start End Updated Duration Sequences Logs Task Bundle
finished 5 months ago 5 months ago 5 months ago 12 minutes (772sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
RCSAATSR 30.96 7.3215 520.344
ATTSGHYR 28.92 6.98009 469.869
RRCSAATS 30.4 8.01597 450.921
GRGGYGGG 34.96 10.8792 433.727
GGGYGGGG 25.2 5.95759 409.724
WTGTAGTY 13.7 1.47565 406.979
TGTAGTYY 15.56 2.29892 370.99
CSAATSRV 35.02 12.296 365.161
GGCGGGRC 22.42 5.73091 328.212
TACAWNTC 12.8 1.87009 303.324
RKGGGYGG 35.68 14.6057 288.543
ANWTGTAG 13.26 2.63405 239.995
ACAWNTCC 14.88 3.9299 198.791
TBYBATTG 23.96 10.0348 167.429
GGGANWTG 17.46 6.34942 149.42
TTGGYTRN 22.6 9.76593 146.17
RCWTMCKG 22.28 9.65178 142.889
GCGGGRCB 25.66 12.157 139.076
CGSAHGYG 19.06 7.88796 130.136
AWYTCCCA 11.4 3.36012 127.508
GCGCABGC 11.44 3.39874 126.575
AATBARMD 24.22 11.6005 125.932
WGGGYGGG 19.78 8.76834 117.582
WRGGGGYG 22.18 10.7234 110.169
GGARGBGG 28.74 15.7252 108.992
TKCYGGGW 18.8 8.43615 107.542
CTTCCKGB 22.82 11.3518 106.05
RGGCGGGH 26.8 15.0204 91.9666
ATTSGYYY 15.98 7.10093 90.3543
AABATGGC 5.56 1.2303 82.2783
TATTGGHY 7.9 2.37004 82.0468
GGGHSGWG 28.04 16.637 80.1713
TRCGCAYG 4.96 1.0134 79.1606
RTGACGTM 5.52 1.30936 75.1004
TTCCKRTY 11.32 4.60267 72.7443
GGGAGGGG 9.56 3.54687 71.5404
TGWCGTMA 4.72 1.00824 71.2069
CGGKRCBD 35.94 24.0884 68.2958
RCSAATAG 5.38 1.35398 67.6357
ACGWCAYB 8.42 3.03717 64.96
GGCSGWRC 16.16 8.32443 62.245
GGGGAGGG 9.06 3.54687 60.3705
GKAAGTRH 12.24 5.74117 57.1815
WHTCCCAG 14.54 7.36962 57.1515
ATKCTGGG 5.34 1.55912 54.301
CSAATAGV 6.5 2.18847 54.186
RGTGGGBG 16.3 8.87352 52.8356
GCAVGCGC 9.42 4.0698 50.8714
GADSGMGG 25.24 16.193 49.9301
TCSRCCCC 10.92 5.11785 49.7322
KGGGCGTG 7.58 2.94188 49.5793
RABBGACR 21.12 12.8914 48.5392
TCYRGGWH 24.0 15.3458 47.1951
CAMTCAVS 14.68 7.93904 47.1521
GGGCGTGG 5.72 1.92591 46.4735
TRATTSGA 3.84 0.962785 45.796
GATTSGAY 3.78 0.95242 44.6316
AGGNNGGG 35.44 25.5382 44.2175
AHDCRMAB 35.88 25.9408 44.1653
DACTTCCG 7.14 2.91335 41.2661
TTGGTCNR 8.56 3.98284 37.2659
TAGTYYWH 13.2 7.34134 37.1087
TSGMTRHB 33.48 24.4248 36.9805
TTTRHWTW 10.3 5.23111 36.503
WKCAAAKN 17.22 10.5346 36.1997
GGWGGGGH 18.64 11.7889 34.6581
ATGGCRRC 6.34 2.6236 34.339
CCATSTTK 4.88 1.75022 33.7813
GTCAYGTG 3.3 0.898862 33.6514
TGANTGAC 4.74 1.68006 33.3425
AVHGAYAR 19.06 12.2435 33.1149
GGCGTGGY 6.64 2.86638 32.7995
ABATGGCG 4.56 1.60003 32.3846
GCSGWGCB 21.06 13.975 32.259
AYGATTSG 3.42 0.983913 32.2379
GGATTSGH 7.1 3.19072 32.1711
ACGSAHGY 8.1 3.8694 32.1389
GVATKCTG 7.44 3.42009 32.1228
AGATAAGV 3.64 1.10322 31.9449
CGCAGGCG 4.94 1.8793 30.2365
AWWMRMAA 14.1 8.47085 29.637
THCRBTTC 13.68 8.19693 28.7288
GAGGGGCG 6.04 2.63058 28.2765
AGNAWGHR 29.96 22.118 28.049
TWATTVGY 5.48 2.29138 27.6353
GGGGGAGG 7.48 3.62861 27.548
CATVYTKR 12.12 7.07735 27.1144
ADMGVAAG 17.58 11.4732 27.0008
GKTDCYKD 37.54 29.2801 26.1354
CGTCAHCR 5.24 2.19308 25.9511
GATTSGTR 3.48 1.15672 25.3159
TCTCGCGA 2.12 0.479502 24.991
KCAAVGSH 23.78 17.0372 23.889
TRTTTAYH 5.48 2.42149 23.781
ACSCCSMC 14.46 9.18925 23.277
TGHGYBTG 15.76 10.2736 23.013
TGCGCAGK 4.26 1.69741 22.1397
CBAATWAR 5.96 2.86554 20.6069
GCGTKGCY 6.84 3.48569 20.5196
ATSAGADN 14.98 9.89392 19.6332
CGCGCAYG 3.32 1.21444 19.1746
ATTSGTRR 5.0 2.27962 18.961
GCGSAAGY 8.98 5.1531 18.8531
CGGSGKCG 10.1 6.05859 18.193
WTRVATAM 5.32 2.52857 18.1137
RTCRCTKM 11.12 6.87438 18.0272
CSAATCCV 7.16 3.85416 17.6947
HRGHAACN 34.72 27.6791 17.644
TCSKBMTY 33.34 26.3962 17.6068
WGTKYGYW 14.62 9.83777 16.6791
TTAAAGGG 2.28 0.694367 16.5699
YTSGNTCB 30.9 24.2936 16.3533
RVGAYCBG 24.02 18.0562 16.1438
TCSDBCCW 32.66 25.9531 16.1407
GKMTGHGH 26.88 20.6765 15.8089
GATAMGAN 3.28 1.28891 15.6121
VCTGRGAN 30.84 24.3541 15.4509
ASCGANSS 18.0 12.8297 15.4221
TTCCKGCY 9.82 6.07521 14.6495
ABWTSAAA 5.72 2.96822 14.4871
YCRGGTYB 20.08 14.7614 14.2976
TMAYTCAV 6.1 3.25252 14.2909
AAGHKRAA 10.58 6.72235 14.1063
CTTAAAGG 2.18 0.695478 13.9324
RGHAACNR 26.42 20.4987 13.8535
GCCCCYTH 13.14 8.8518 13.752
TTGGMCAG 4.04 1.8402 13.639
GHAHRCAH 18.36 13.3536 13.3558
CRCCTCCD 15.6 10.9882 13.1351
DVGYWMGG 34.72 28.3222 12.9521
GGCGKGYC 10.8 7.04458 12.2376
WAHGGNAW 17.06 12.3393 12.2283
TGGGGYGG 7.2 4.19083 12.2012
TDACRNAY 12.04 8.07164 12.1723
ACTACAST 2.36 0.8379 12.1075
AGGCNGWG 15.22 10.7641 12.0963
KWDCWAAG 11.02 7.25041 11.9194
WNGCTYYG 26.32 20.7169 11.4645
TGMTADGN 10.66 7.00046 11.3611
GTTGCTAD 1.94 0.623714 11.2276
GRCSGWRG 21.02 16.0016 10.7679
ACGTKACH 3.64 1.68596 10.6807
RNCTDGAR 34.26 28.2696 10.3974
KRTCKNTR 19.02 14.2788 10.2665
GSKMAGDG 31.66 25.8516 10.193
CTTTAMGR 3.38 1.54013 9.9564
GTGCGCRV 7.4 4.4935 9.89192
WGCGYKCG 7.82 4.8365 9.70871
DAYGAWTG 4.36 2.22709 9.6478
TGCCWRTC 4.42 2.27126 9.61444
CSGYCTCK 12.62 8.79408 9.56009
RWVCHKAG 35.88 29.9712 9.3592
TCCGKTMB 7.22 4.42978 8.75652
GMAASMBR 30.58 25.0814 8.60613
ATADRHAY 6.94 4.22529 8.53437
AASTGTAG 2.38 0.952295 8.37039
WDAGAAYK 10.44 7.07977 8.29031
GWGGAGGG 7.72 4.86367 8.22901
GYTVKGKK 34.16 28.5288 8.17697
TKCGTMAY 3.34 1.58777 8.05123
CCAGAATB 3.62 1.79677 7.66782
CATGSCGG 3.22 1.52425 7.60826
CGCSCTCB 14.6 10.6992 7.59305
GYCTYGCG 5.66 3.29705 7.58231
TTMCGGYR 7.1 4.41953 7.55739
TCSVTCSC 12.16 8.6041 7.5096
YGGKATBB 16.62 12.4964 7.38571
GSWAATGR 6.4 3.88107 7.38399
CCYAGMAR 13.42 9.70825 7.29433
DDGCCTKG 21.04 16.4843 7.17753
AATTSGHT 3.04 1.4202 7.16872
GHCGHWCG 7.18 4.51423 7.12892
RACKACAS 5.26 3.02654 7.02904
GGWDGAGG 14.26 10.4864 6.84957
RGGTGGGH 11.38 8.0079 6.83236
CGTMACKR 3.98 2.09103 6.82612
ATTAGCAB 1.76 0.633238 6.51146
THWGHGTY 15.04 11.2135 6.4661
HCRGHTCS 26.44 21.5533 6.44909
GGCKGGGR 15.82 11.9192 6.31433
WCAAABWH 12.78 9.26282 6.30025
TAADAWWA 4.0 2.13536 6.2309
VAATKARB 14.88 11.117 6.09446
TSYTGTYW 11.38 8.09174 6.00309
GGCTDCBG 17.14 13.165 5.74259
GADCGMGM 9.16 6.24993 5.67269
AYVGGWAA 7.08 4.5522 5.57176
GKAAKTHG 7.12 4.5879 5.52768
TCCCAGKA 4.08 2.23372 5.46923
TGTTATCW 1.48 0.500001 5.44988
AGTSYBWG 17.76 13.7658 5.40118
TCSAATMG 2.26 0.974778 5.31775
KRSCTGGG 16.3 12.4784 5.25833
GBATGCTM 3.48 1.81183 5.20502
TDCCKTWB 14.94 11.2884 5.12287
CTMGCGAK 3.26 1.6597 5.11687
AGNATGCY 5.2 3.10331 5.0647
AHCDACSA 6.04 3.76739 4.96203
TCGCGATR 1.18 0.349875 4.92628
DRGGYANG 28.04 23.3026 4.89835
TTARHAWA 3.86 2.10619 4.83296
KDGACWSR 29.62 24.8354 4.63791
TCAYGTGR 3.66 1.97071 4.62856
DCTCHASS 27.7 23.0531 4.49419
AAGGYGGG 5.46 3.34427 4.48862
TWCSGCCY 9.7 6.82523 4.40553
GMAGTRNG 13.84 10.4083 4.39328
GTGGGGSR 9.3 6.49143 4.36249
AACAAARV 4.84 2.87551 4.29815
RRGTRTGK 9.16 6.3854 4.24039
ACSGYCSC 8.36 5.71759 4.21331
GRGYMMCG 15.98 12.349 4.07804
CTTATCAS 2.14 0.944016 3.97592
AKTTCCKG 6.38 4.11442 3.9656
GWTCYCAG 5.1 3.10445 3.88554
ANAYTCNA 10.24 7.35026 3.77747
CGGYYCGB 12.98 9.73264 3.73765
DCGAACGV 2.68 1.31836 3.68856
TCTGGGAG 3.68 2.03891 3.63016
SGCARAGS 13.22 9.96919 3.53231
GWCGTMAR 4.1 2.35915 3.52463
TTTKMAWS 7.86 5.36784 3.49383
TAACCCTW 1.34 0.471367 3.34125
TGASATMA 2.3 1.07592 3.28118
TGMGYDAG 7.38 5.01596 2.98402
TGVCTGGY 8.86 6.2597 2.96178
TCCYAGHG 9.28 6.618 2.94926
AWMCYKAA 5.76 3.69709 2.93016
GATWVGGY 6.46 4.26603 2.90347
CTGCCWBB 24.42 20.2786 2.80034
RATSGKMG 10.14 7.37662 2.75122
AGWAWRGA 5.38 3.40973 2.7133
ATWANATA 1.54 0.613412 2.4742
AMTSRAGW 8.24 5.78817 2.4391
DMTGCCTK 11.36 8.4723 2.43678
TGCTAATR 1.08 0.348591 2.38831
GCGGSGDC 14.9 11.6179 2.36922
CGMARCSS 15.38 12.0526 2.34508
KCGTMACK 4.06 2.41073 2.20723
GCRCDCTG 9.34 6.75058 2.19371
WGGKGGAG 9.68 7.04892 2.13987
WTHTATAS 2.56 1.30556 2.10786
ATGGAVAV 6.18 4.10737 2.08036

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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