Task #3638 - 3b3bae2a Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 12 minutes (772sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) RCSAATSR 30.96 7.3215 520.344 ATTSGHYR 28.92 6.98009 469.869 RRCSAATS 30.4 8.01597 450.921 GRGGYGGG 34.96 10.8792 433.727 GGGYGGGG 25.2 5.95759 409.724 WTGTAGTY 13.7 1.47565 406.979 TGTAGTYY 15.56 2.29892 370.99 CSAATSRV 35.02 12.296 365.161 GGCGGGRC 22.42 5.73091 328.212 TACAWNTC 12.8 1.87009 303.324 RKGGGYGG 35.68 14.6057 288.543 ANWTGTAG 13.26 2.63405 239.995 ACAWNTCC 14.88 3.9299 198.791 TBYBATTG 23.96 10.0348 167.429 GGGANWTG 17.46 6.34942 149.42 TTGGYTRN 22.6 9.76593 146.17 RCWTMCKG 22.28 9.65178 142.889 GCGGGRCB 25.66 12.157 139.076 CGSAHGYG 19.06 7.88796 130.136 AWYTCCCA 11.4 3.36012 127.508 GCGCABGC 11.44 3.39874 126.575 AATBARMD 24.22 11.6005 125.932 WGGGYGGG 19.78 8.76834 117.582 WRGGGGYG 22.18 10.7234 110.169 GGARGBGG 28.74 15.7252 108.992 TKCYGGGW 18.8 8.43615 107.542 CTTCCKGB 22.82 11.3518 106.05 RGGCGGGH 26.8 15.0204 91.9666 ATTSGYYY 15.98 7.10093 90.3543 AABATGGC 5.56 1.2303 82.2783 TATTGGHY 7.9 2.37004 82.0468 GGGHSGWG 28.04 16.637 80.1713 TRCGCAYG 4.96 1.0134 79.1606 RTGACGTM 5.52 1.30936 75.1004 TTCCKRTY 11.32 4.60267 72.7443 GGGAGGGG 9.56 3.54687 71.5404 TGWCGTMA 4.72 1.00824 71.2069 CGGKRCBD 35.94 24.0884 68.2958 RCSAATAG 5.38 1.35398 67.6357 ACGWCAYB 8.42 3.03717 64.96 GGCSGWRC 16.16 8.32443 62.245 GGGGAGGG 9.06 3.54687 60.3705 GKAAGTRH 12.24 5.74117 57.1815 WHTCCCAG 14.54 7.36962 57.1515 ATKCTGGG 5.34 1.55912 54.301 CSAATAGV 6.5 2.18847 54.186 RGTGGGBG 16.3 8.87352 52.8356 GCAVGCGC 9.42 4.0698 50.8714 GADSGMGG 25.24 16.193 49.9301 TCSRCCCC 10.92 5.11785 49.7322 KGGGCGTG 7.58 2.94188 49.5793 RABBGACR 21.12 12.8914 48.5392 TCYRGGWH 24.0 15.3458 47.1951 CAMTCAVS 14.68 7.93904 47.1521 GGGCGTGG 5.72 1.92591 46.4735 TRATTSGA 3.84 0.962785 45.796 GATTSGAY 3.78 0.95242 44.6316 AGGNNGGG 35.44 25.5382 44.2175 AHDCRMAB 35.88 25.9408 44.1653 DACTTCCG 7.14 2.91335 41.2661 TTGGTCNR 8.56 3.98284 37.2659 TAGTYYWH 13.2 7.34134 37.1087 TSGMTRHB 33.48 24.4248 36.9805 TTTRHWTW 10.3 5.23111 36.503 WKCAAAKN 17.22 10.5346 36.1997 GGWGGGGH 18.64 11.7889 34.6581 ATGGCRRC 6.34 2.6236 34.339 CCATSTTK 4.88 1.75022 33.7813 GTCAYGTG 3.3 0.898862 33.6514 TGANTGAC 4.74 1.68006 33.3425 AVHGAYAR 19.06 12.2435 33.1149 GGCGTGGY 6.64 2.86638 32.7995 ABATGGCG 4.56 1.60003 32.3846 GCSGWGCB 21.06 13.975 32.259 AYGATTSG 3.42 0.983913 32.2379 GGATTSGH 7.1 3.19072 32.1711 ACGSAHGY 8.1 3.8694 32.1389 GVATKCTG 7.44 3.42009 32.1228 AGATAAGV 3.64 1.10322 31.9449 CGCAGGCG 4.94 1.8793 30.2365 AWWMRMAA 14.1 8.47085 29.637 THCRBTTC 13.68 8.19693 28.7288 GAGGGGCG 6.04 2.63058 28.2765 AGNAWGHR 29.96 22.118 28.049 TWATTVGY 5.48 2.29138 27.6353 GGGGGAGG 7.48 3.62861 27.548 CATVYTKR 12.12 7.07735 27.1144 ADMGVAAG 17.58 11.4732 27.0008 GKTDCYKD 37.54 29.2801 26.1354 CGTCAHCR 5.24 2.19308 25.9511 GATTSGTR 3.48 1.15672 25.3159 TCTCGCGA 2.12 0.479502 24.991 KCAAVGSH 23.78 17.0372 23.889 TRTTTAYH 5.48 2.42149 23.781 ACSCCSMC 14.46 9.18925 23.277 TGHGYBTG 15.76 10.2736 23.013 TGCGCAGK 4.26 1.69741 22.1397 CBAATWAR 5.96 2.86554 20.6069 GCGTKGCY 6.84 3.48569 20.5196 ATSAGADN 14.98 9.89392 19.6332 CGCGCAYG 3.32 1.21444 19.1746 ATTSGTRR 5.0 2.27962 18.961 GCGSAAGY 8.98 5.1531 18.8531 CGGSGKCG 10.1 6.05859 18.193 WTRVATAM 5.32 2.52857 18.1137 RTCRCTKM 11.12 6.87438 18.0272 CSAATCCV 7.16 3.85416 17.6947 HRGHAACN 34.72 27.6791 17.644 TCSKBMTY 33.34 26.3962 17.6068 WGTKYGYW 14.62 9.83777 16.6791 TTAAAGGG 2.28 0.694367 16.5699 YTSGNTCB 30.9 24.2936 16.3533 RVGAYCBG 24.02 18.0562 16.1438 TCSDBCCW 32.66 25.9531 16.1407 GKMTGHGH 26.88 20.6765 15.8089 GATAMGAN 3.28 1.28891 15.6121 VCTGRGAN 30.84 24.3541 15.4509 ASCGANSS 18.0 12.8297 15.4221 TTCCKGCY 9.82 6.07521 14.6495 ABWTSAAA 5.72 2.96822 14.4871 YCRGGTYB 20.08 14.7614 14.2976 TMAYTCAV 6.1 3.25252 14.2909 AAGHKRAA 10.58 6.72235 14.1063 CTTAAAGG 2.18 0.695478 13.9324 RGHAACNR 26.42 20.4987 13.8535 GCCCCYTH 13.14 8.8518 13.752 TTGGMCAG 4.04 1.8402 13.639 GHAHRCAH 18.36 13.3536 13.3558 CRCCTCCD 15.6 10.9882 13.1351 DVGYWMGG 34.72 28.3222 12.9521 GGCGKGYC 10.8 7.04458 12.2376 WAHGGNAW 17.06 12.3393 12.2283 TGGGGYGG 7.2 4.19083 12.2012 TDACRNAY 12.04 8.07164 12.1723 ACTACAST 2.36 0.8379 12.1075 AGGCNGWG 15.22 10.7641 12.0963 KWDCWAAG 11.02 7.25041 11.9194 WNGCTYYG 26.32 20.7169 11.4645 TGMTADGN 10.66 7.00046 11.3611 GTTGCTAD 1.94 0.623714 11.2276 GRCSGWRG 21.02 16.0016 10.7679 ACGTKACH 3.64 1.68596 10.6807 RNCTDGAR 34.26 28.2696 10.3974 KRTCKNTR 19.02 14.2788 10.2665 GSKMAGDG 31.66 25.8516 10.193 CTTTAMGR 3.38 1.54013 9.9564 GTGCGCRV 7.4 4.4935 9.89192 WGCGYKCG 7.82 4.8365 9.70871 DAYGAWTG 4.36 2.22709 9.6478 TGCCWRTC 4.42 2.27126 9.61444 CSGYCTCK 12.62 8.79408 9.56009 RWVCHKAG 35.88 29.9712 9.3592 TCCGKTMB 7.22 4.42978 8.75652 GMAASMBR 30.58 25.0814 8.60613 ATADRHAY 6.94 4.22529 8.53437 AASTGTAG 2.38 0.952295 8.37039 WDAGAAYK 10.44 7.07977 8.29031 GWGGAGGG 7.72 4.86367 8.22901 GYTVKGKK 34.16 28.5288 8.17697 TKCGTMAY 3.34 1.58777 8.05123 CCAGAATB 3.62 1.79677 7.66782 CATGSCGG 3.22 1.52425 7.60826 CGCSCTCB 14.6 10.6992 7.59305 GYCTYGCG 5.66 3.29705 7.58231 TTMCGGYR 7.1 4.41953 7.55739 TCSVTCSC 12.16 8.6041 7.5096 YGGKATBB 16.62 12.4964 7.38571 GSWAATGR 6.4 3.88107 7.38399 CCYAGMAR 13.42 9.70825 7.29433 DDGCCTKG 21.04 16.4843 7.17753 AATTSGHT 3.04 1.4202 7.16872 GHCGHWCG 7.18 4.51423 7.12892 RACKACAS 5.26 3.02654 7.02904 GGWDGAGG 14.26 10.4864 6.84957 RGGTGGGH 11.38 8.0079 6.83236 CGTMACKR 3.98 2.09103 6.82612 ATTAGCAB 1.76 0.633238 6.51146 THWGHGTY 15.04 11.2135 6.4661 HCRGHTCS 26.44 21.5533 6.44909 GGCKGGGR 15.82 11.9192 6.31433 WCAAABWH 12.78 9.26282 6.30025 TAADAWWA 4.0 2.13536 6.2309 VAATKARB 14.88 11.117 6.09446 TSYTGTYW 11.38 8.09174 6.00309 GGCTDCBG 17.14 13.165 5.74259 GADCGMGM 9.16 6.24993 5.67269 AYVGGWAA 7.08 4.5522 5.57176 GKAAKTHG 7.12 4.5879 5.52768 TCCCAGKA 4.08 2.23372 5.46923 TGTTATCW 1.48 0.500001 5.44988 AGTSYBWG 17.76 13.7658 5.40118 TCSAATMG 2.26 0.974778 5.31775 KRSCTGGG 16.3 12.4784 5.25833 GBATGCTM 3.48 1.81183 5.20502 TDCCKTWB 14.94 11.2884 5.12287 CTMGCGAK 3.26 1.6597 5.11687 AGNATGCY 5.2 3.10331 5.0647 AHCDACSA 6.04 3.76739 4.96203 TCGCGATR 1.18 0.349875 4.92628 DRGGYANG 28.04 23.3026 4.89835 TTARHAWA 3.86 2.10619 4.83296 KDGACWSR 29.62 24.8354 4.63791 TCAYGTGR 3.66 1.97071 4.62856 DCTCHASS 27.7 23.0531 4.49419 AAGGYGGG 5.46 3.34427 4.48862 TWCSGCCY 9.7 6.82523 4.40553 GMAGTRNG 13.84 10.4083 4.39328 GTGGGGSR 9.3 6.49143 4.36249 AACAAARV 4.84 2.87551 4.29815 RRGTRTGK 9.16 6.3854 4.24039 ACSGYCSC 8.36 5.71759 4.21331 GRGYMMCG 15.98 12.349 4.07804 CTTATCAS 2.14 0.944016 3.97592 AKTTCCKG 6.38 4.11442 3.9656 GWTCYCAG 5.1 3.10445 3.88554 ANAYTCNA 10.24 7.35026 3.77747 CGGYYCGB 12.98 9.73264 3.73765 DCGAACGV 2.68 1.31836 3.68856 TCTGGGAG 3.68 2.03891 3.63016 SGCARAGS 13.22 9.96919 3.53231 GWCGTMAR 4.1 2.35915 3.52463 TTTKMAWS 7.86 5.36784 3.49383 TAACCCTW 1.34 0.471367 3.34125 TGASATMA 2.3 1.07592 3.28118 TGMGYDAG 7.38 5.01596 2.98402 TGVCTGGY 8.86 6.2597 2.96178 TCCYAGHG 9.28 6.618 2.94926 AWMCYKAA 5.76 3.69709 2.93016 GATWVGGY 6.46 4.26603 2.90347 CTGCCWBB 24.42 20.2786 2.80034 RATSGKMG 10.14 7.37662 2.75122 AGWAWRGA 5.38 3.40973 2.7133 ATWANATA 1.54 0.613412 2.4742 AMTSRAGW 8.24 5.78817 2.4391 DMTGCCTK 11.36 8.4723 2.43678 TGCTAATR 1.08 0.348591 2.38831 GCGGSGDC 14.9 11.6179 2.36922 CGMARCSS 15.38 12.0526 2.34508 KCGTMACK 4.06 2.41073 2.20723 GCRCDCTG 9.34 6.75058 2.19371 WGGKGGAG 9.68 7.04892 2.13987 WTHTATAS 2.56 1.30556 2.10786 ATGGAVAV 6.18 4.10737 2.08036 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete