Task #3655 - 718c18ab Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 8 minutes (498sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) AAAABMAA 23.2409 13.7859 53.1518 GRGKHRSG 22.8054 13.455 52.8796 STBRGTKS 31.2629 20.7264 49.8379 GGKVSKGG 16.5712 8.88318 48.5182 TKAGTTCV 7.72404 2.87148 47.2592 WTABKTAY 21.4073 13.0076 42.9477 AAASMAAW 23.7451 14.9761 42.1821 GGASBBRG 22.2324 14.2304 35.6903 CYCKRSCK 14.9897 8.55179 33.8509 GYSCTBGS 13.6603 7.53762 33.8507 SSGTGSGB 6.73848 2.73137 32.9569 WTBCWWTC 25.8996 17.5939 32.6395 ACADWSAM 29.796 21.0115 32.4238 DGTKVGTK 24.0431 16.0273 32.4078 TACVTAWN 15.9065 9.3724 32.2246 TAKKTATN 18.6798 11.616 31.8316 TGHMTSTR 29.6127 20.9092 31.8251 ACTHASVD 31.8359 23.2589 28.3065 TTRTTTTD 19.1382 12.2984 27.9694 AAYMAAAH 24.937 17.2332 27.6614 TDGCYYWG 24.2494 16.7491 26.5312 DTTBATTK 27.5499 19.6453 26.3857 TCTDHSTY 37.543 28.7168 26.2361 AGYTMCRG 7.99908 3.8401 26.128 CSRGSGCB 6.32592 2.74506 25.4472 GVTGGCCK 5.6154 2.30063 25.17 AYRSATAC 7.38024 3.46025 25.1482 RRWSAWAG 33.9904 25.5918 24.9981 TSVDTKCK 35.3885 26.8824 24.9392 RRGHTSGM 24.6848 17.402 23.7959 TSDCTKHC 31.2629 23.3196 23.2155 SRCTVRGS 23.5618 16.5411 22.668 GGCVGRSG 5.70708 2.49297 21.6175 ACTCRCTN 6.00504 2.69383 21.494 AGKGMBSG 10.7266 6.10706 21.1088 GTTCSRSG 3.64428 1.26221 20.5352 TWCRDTTH 25.8538 18.8282 20.1343 MWMBGTAR 24.8911 18.0147 19.7972 TTTVKTTR 20.1238 13.9152 19.3502 AABBCMAR 34.9759 27.2467 19.0925 TCRCTNDG 13.2019 8.18907 19.0798 GCMTCKGC 4.1256 1.59339 18.9176 GGVWRSAG 26.9769 20.0386 18.3549 SGCTGKCS 4.03392 1.56843 17.9791 TGGTCTAC 2.01696 0.48074 17.7667 CSBMCCCR 8.4804 4.64414 17.485 WYCSYAVC 20.7197 14.6626 17.113 ACWCRCAC 6.80724 3.45863 16.9225 TCCRGGWC 4.14852 1.68689 16.5748 TTGAVYTH 18.061 12.462 16.3134 GCRSGBRS 12.8581 8.13676 16.303 GRGYRCTG 7.12812 3.74761 15.8374 CTGYCWCK 8.96172 5.14164 15.3597 MTCRCTND 22.1407 16.1936 14.5761 RGATSGMY 9.42012 5.57737 14.1581 TGHVTWTG 20.8572 15.1339 13.995 GCCKGGKC 3.34632 1.28354 13.9478 AARCAAWC 6.46344 3.38649 13.6939 RGWCADGG 12.7435 8.28531 13.4915 ATGTATRT 4.90488 2.31546 13.234 RYCACCAH 11.3912 7.22519 13.0395 GCYTGCCK 3.82764 1.61621 12.9674 DACMWAGK 17.9922 12.7606 12.9576 AATGDAWW 19.2528 13.8599 12.9001 AGADWSAA 20.8114 15.2373 12.7913 GDTSGMWY 17.8547 12.6752 12.659 TGTGYGYG 6.69264 3.61594 12.6063 AGGDMAGS 14.8063 10.1398 12.0381 TGGTGGYN 8.595 5.09057 12.038 ASGGYTDC 7.24272 4.08038 11.7113 TGGGATTR 3.48384 1.44793 11.6337 TGCTSSGA 3.75888 1.63515 11.3349 CGBKCGYS 1.28352 0.259679 11.3296 TKYAATCC 4.97364 2.45385 11.3244 TAYKWACW 13.2707 8.92557 11.3012 ATCCRCYT 3.73596 1.62606 11.1899 GAGTTMCD 5.45496 2.8111 10.983 CTGHCYTS 15.9523 11.2297 10.949 CRKGSYGG 8.1366 4.8232 10.8281 GGKCTACR 3.04836 1.20729 10.7773 RNSCTRAG 22.92 17.3721 10.7549 TCRADKCC 7.3344 4.21557 10.7168 AAYAAYAA 7.86156 4.62381 10.6476 TTTTTAAW 10.5203 6.76349 10.2157 GGNAAGSR 13.9583 9.62911 10.0553 GAWGMDSG 14.8522 10.3986 9.95551 AGWTCRAG 3.71304 1.66827 9.7889 ATTKTYWT 20.055 14.9627 9.66147 ACRWWTRC 9.99312 6.39495 9.54982 TDAGGTMR 7.83864 4.69262 9.45786 TCWGYWWC 16.7316 12.0736 9.44842 RGCCKRGY 8.2512 5.01997 9.39038 CMTGKCTS 11.5288 7.66909 9.34524 ACSBAMDS 19.184 14.263 9.11627 GYTCANRG 13.6374 9.45939 9.09572 CAATSGMB 5.93628 3.27247 9.06876 GSBGKGCG 2.03988 0.684486 8.49097 AWGAHYDA 29.4522 23.6833 8.47053 WARGTAAN 13.5457 9.45213 8.44366 CCRGGCKG 3.41508 1.52879 8.43404 TRBTTTKA 19.6654 14.7807 8.426 AAWKRCAA 12.5372 8.61301 8.31887 GCRTSCRC 2.9796 1.25481 8.24367 GRGSGMGG 4.51524 2.29322 8.17755 GCWMTBSS 19.4362 14.641 7.95252 TGDTTGKK 14.325 10.1795 7.88874 TATTYTAW 9.09924 5.83869 7.65257 RGCAYBBG 18.2214 13.6067 7.63576 RAYTRAAS 15.5168 11.2602 7.45161 ACTRARNC 12.5831 8.75307 7.36896 WYAGGGTY 7.58652 4.65927 7.32009 ACCHTGWC 5.73 3.2432 7.11868 TRCSYRCS 7.01352 4.23992 6.93707 TAGACCMG 2.22324 0.837211 6.84599 TTYTRTTM 15.0126 10.8977 6.83908 DMCTWKGK 30.3003 24.7503 6.83777 TCCATTGN 4.90488 2.65182 6.78575 TYAGCTCC 3.39216 1.59418 6.58352 RGWHRCKG 22.2324 17.3575 6.54127 TTTRTTVW 21.201 16.4435 6.41139 ATRCRMAY 12.0788 8.44987 6.24077 ATTYKAAW 12.7435 9.03192 6.09767 CKMMCSAS 10.8412 7.4291 6.03171 TGMGCYAC 3.07128 1.40962 5.89391 TTCVAGKC 5.9592 3.5016 5.89108 ATGGMYBR 15.6773 11.6123 5.78008 TSCSKCCS 5.06532 2.83866 5.68813 TNGGWTRG 9.76392 6.58809 5.47689 AAAHAGAA 11.5058 8.07435 5.25234 ANGTARMH 30.0023 24.7635 5.21149 TTDKTTTC 14.3479 10.53 5.16686 TCTRBCTR 13.4999 9.79645 5.1449 GDSCTYHG 20.926 16.4007 5.07269 TNMRRATG 30.5982 25.4266 4.66602 RSTTKGVR 31.4004 26.1987 4.58741 CANTGMTR 15.0355 11.2133 4.54815 ATRATARY 8.29704 5.48855 4.36032 GRRAKMSG 13.4082 9.82485 4.29098 CGMGKCSR 1.28352 0.383596 4.11304 TRRCTAAG 3.52968 1.82054 3.95402 ASSAABVG 18.7944 14.6575 3.89901 RYAGMYAG 14.623 10.954 3.79175 ACRTGCRY 3.75888 1.99625 3.75313 TRTTRTTY 12.7206 9.29735 3.74943 TAKGTKYG 6.303 3.93845 3.70685 AAAABTAA 7.449 4.85847 3.70672 CYRASKMR 24.2494 19.682 3.67235 GRGCAKDG 11.185 8.01593 3.40719 TTTTAATW 6.73848 4.32013 3.31184 TCTCKMKC 6.303 3.97835 3.23366 TYAYTRAW 17.1212 13.2617 3.19748 AAGMAAAA 8.3658 5.66638 3.14176 GYSYTAGG 4.4694 2.56007 3.14169 TGGAWVGA 7.38024 4.85979 3.09746 AAYMGAAW 9.44304 6.57968 3.02467 ACDAAAYA 8.66376 5.93673 2.92706 TCCRCYTV 7.65528 5.10352 2.9066 AVWYGATA 7.51776 4.99329 2.8797 MAACSCTR 5.75292 3.57483 2.84174 AASKNAGS 21.2698 17.0922 2.80271 GCRHACRC 5.2716 3.202 2.78112 CAWBCACD 13.7291 10.3109 2.76207 AAAWTMAT 9.44304 6.61036 2.75157 AATKYTAW 12.4685 9.2112 2.73092 CCTMSTCS 4.1256 2.33074 2.7081 AGTACTAC 1.10016 0.320096 2.69984 ARYSAGTM 10.2911 7.34538 2.62554 ATAWMTAC 5.36328 3.28668 2.61539 WCTGTWGN 15.746 12.1213 2.60977 GYGMGCCR 2.31492 1.05031 2.59246 GCSKMCSG 1.3752 0.473332 2.4821 TTAATCSC 1.8336 0.746568 2.45503 GRMSGAMG 5.86752 3.70137 2.41611 GGBGWYSG 5.24868 3.21357 2.40617 GSVHGGTG 10.2452 7.34994 2.26383 TRGMTAYK 10.9328 7.95434 2.15657 ACRCRTGC 2.91084 1.48371 2.0639 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete