Task #3651 - 26a9e6d8 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 10 minutes (651sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TRTTKAYH 51.88 22.1705 447.757 TTRNGHAA 38.54 17.8064 250.582 TAAMCANN 42.22 23.1041 186.426 TGWMSTYB 48.82 28.9097 182.562 GNMCTYBG 44.86 26.1747 167.683 GTWTAYHN 37.54 20.3791 161.026 RAGKYCAN 44.66 26.5816 155.763 ATYGATYN 15.06 4.85106 153.372 WYGTAGTY 10.88 2.91134 137.937 ATTDCNYA 27.18 13.54 132.038 GGKYRRDG 39.22 23.2197 130.253 AGKTCANN 40.5 25.0801 115.954 TDCHYAAY 33.34 19.6695 104.228 TACRWHTC 10.72 3.64898 95.2591 AARAYMAA 20.44 10.1183 93.546 ACTACAWY 7.82 2.12693 93.2769 GGGGHGGG 7.18 1.83938 91.7071 GGRGGHGG 10.64 3.93095 81.7316 GGGARWYG 11.84 4.67611 81.4408 ARWTGTAG 7.94 2.491 77.0342 AAMCAARN 32.72 20.8236 75.384 TTKCRWCA 13.5 6.02561 72.9476 RMCTTWGN 32.5 20.8193 72.5313 TGSMCTYK 24.54 14.5477 67.012 ACYTWGNH 38.72 26.9132 63.5214 RWKCVAHG 37.66 25.9655 63.4848 TMRATAHD 24.28 14.5783 62.8691 ACAWYTCC 9.66 3.95373 59.3356 GTAGTYCN 8.36 3.38814 50.8951 ARCRAAYA 15.34 8.28268 50.1946 GGGAGGVG 6.92 2.53144 50.0524 CGCHYSCG 4.1 1.02455 49.7449 GGHGGGGS 8.06 3.26469 48.7353 KDCSWAVG 29.0 19.5962 47.1672 HTGYCCTN 31.0 21.3507 47.008 TTWDCTWW 24.02 15.5706 44.2287 AGKMYAVR 39.88 29.6547 43.5868 TTGTYTTB 15.96 9.12613 43.1193 CGNSGCSG 4.5 1.40343 39.6823 ACAANTCC 8.28 3.70807 39.5942 GCGDBSCG 4.78 1.5667 39.1621 RTTDCRWM 27.36 18.8396 38.8039 AAAAAAAA 6.06 2.33231 38.2872 TGWMCYCA 12.74 7.08352 35.4161 KDNCTYAG 35.42 26.3607 35.1759 CNRYGWCS 22.28 14.8567 34.1549 TCSCAGVA 10.84 5.76196 33.545 GCVTGCGY 3.34 0.921585 33.4789 ATTWAYYW 15.08 9.15587 31.0724 GCHHMGBG 27.46 19.6044 31.0143 TKCRWCAY 13.32 7.82012 30.2714 WKCCMMGH 36.86 28.2258 29.9293 YCWCYRYS 37.46 28.7876 29.8835 AAYTCCCA 5.24 2.07202 29.883 WTRKTTGY 22.0 14.9861 29.5991 TTTDGHAA 18.58 12.1348 29.2132 RATHGATH 9.22 4.89328 27.0487 MTYYGTMB 24.08 17.0423 26.6267 DATTKCAH 18.52 12.3974 25.2271 TGMAATVB 19.46 13.23 24.76 TRHCCTRD 29.18 21.7606 24.6921 RGCGDCGN 4.66 1.87136 24.5864 ASSSWKRG 36.6 28.6594 23.9253 TTTTTTTM 7.0 3.45672 23.7085 WCSVTKBC 31.78 24.2454 23.5611 CCYRGMAB 26.84 19.7822 23.5208 GRGDYRGR 32.54 24.9557 23.4404 RYCWMTGH 37.7 29.7502 23.4112 GCGNDCGR 4.0 1.50624 23.309 GCGDCGRS 2.9 0.896882 22.7565 AGGGCRRR 11.28 6.71222 22.4107 AAVAAAAY 15.26 9.92679 22.1632 CTSSGWWN 28.24 21.2806 21.264 AHGCAMRC 10.66 6.34343 20.5845 RGCGNKCG 3.6 1.34341 20.5357 CTVMCYCV 26.06 19.4829 19.7563 DVGCGKCG 3.92 1.57087 19.3584 DHCWAAGS 29.24 22.4669 18.823 TCCTVNCY 24.54 18.2452 18.6325 TTHACCHH 20.48 14.7384 17.8925 TMACCYYD 17.44 12.1294 17.721 CWSCVTGS 22.4 16.4621 17.534 TGBKTAYG 7.56 4.15941 17.5066 CGMDCSGB 4.88 2.26281 17.2918 GNCSTKGM 23.32 17.3078 17.2565 VRCKCASB 31.82 25.0312 17.2458 MCWMAGTR 17.64 12.352 17.1658 ACAHMCAC 10.44 6.41127 16.9082 RCGCNMCG 3.16 1.18084 16.888 TGDHTTCN 32.76 25.9778 16.6653 TNCKRWTK 36.0 29.0362 16.4704 TTRVYTCA 13.02 8.52953 16.4503 WWTRKTTG 20.72 15.1386 16.0406 GTWGWYWY 23.1 17.2685 15.8378 GRCYMYGV 26.8 20.6518 15.4127 CWRCCAMS 14.48 9.87364 14.9073 TGWMCCYK 17.24 12.2288 14.8612 GTTCAAGG 2.42 0.807279 14.8148 CCGKAAGB 3.4 1.39014 14.7147 TAAYKATW 4.64 2.20336 14.6859 ARYKAWTK 20.36 15.0329 14.0712 CCBTTSCS 10.22 6.43691 14.0521 GVAKCSRR 21.46 16.034 13.832 WKCBTRGM 29.4 23.288 13.4343 GWGGGHGG 7.4 4.27106 13.4026 RCWYMMYG 34.92 28.4612 13.2955 DCCGKAMG 3.54 1.53025 13.1486 TWGAMTTW 7.44 4.33232 12.8934 CCGMWSCS 4.66 2.30397 12.6192 AGWCYWTG 9.02 5.58616 12.564 RTACRCAN 10.18 6.54181 12.2159 RYGARKYM 26.3 20.6129 12.1111 BTCRGWGN 31.8 25.7307 11.9078 TRHGCAAS 10.62 6.92512 11.8911 WRVTRACS 21.44 16.2471 11.8476 TACVYASW 14.08 9.89032 11.0632 WACCKTKV 13.6 9.48475 11.0334 AWBMGWAW 23.72 18.4111 10.9662 CGKCGDGS 2.7 1.07651 10.786 CGVRCGMR 3.5 1.59405 10.6413 AAKGTCBW 9.76 6.33035 10.5519 GWTCKTKS 10.22 6.713 10.4622 CWTAGHWN 21.12 16.1397 10.3739 TMRWTAVC 10.28 6.77562 10.2982 GSSCTGSG 8.16 5.06503 10.2842 CGRYGGCB 3.26 1.45531 10.1081 ARTTCYWR 15.76 11.4345 10.1008 TTGMTYTS 13.48 9.48642 9.95894 CCDCCCCD 8.06 5.009 9.95676 TCKTWSVH 29.26 23.6537 9.8909 CRCCCHCB 10.64 7.14147 9.4802 CATNCTGK 10.6 7.10864 9.47664 AVWGAKHA 35.2 29.3445 9.2339 RAGTAYAV 7.98 5.00241 9.16456 WBCKWATC 7.34 4.51784 8.84876 GCCWHCKS 16.46 12.1913 8.78355 TYAATBAW 9.32 6.11657 8.74556 WCCCCDCC 5.84 3.37306 8.5854 DKCKTWGK 23.5 18.6055 8.03552 AGANCRAA 9.48 6.32512 7.82211 GGAADYSG 7.4 4.65089 7.65346 AASAAMAA 11.46 8.00447 7.55817 AGGMMADC 16.78 12.6187 7.5452 CYGTCYCB 9.48 6.35341 7.49343 GCWMTGBS 20.56 16.0112 7.46042 GBCGMSGG 4.06 2.12177 7.37034 ACKCABYC 6.8 4.19671 7.35678 TMRATMGW 6.02 3.61889 6.88091 GCGMSBGC 4.18 2.23475 6.84315 TCRACADV 14.48 10.6816 6.82161 RRTKAHGH 30.2 25.0237 6.73666 CCYCRKCB 14.0 10.2732 6.73166 TGCGCABG 1.6 0.540462 6.58996 WGVATTKC 11.78 8.38975 6.42817 ACTACAAR 3.24 1.58889 6.38716 AWRWHCSA 24.78 20.0488 6.22736 TCGSHDCG 2.14 0.87209 6.14033 AAMCAWCH 16.26 12.3387 6.07498 CDCACTGN 13.4 9.84934 5.86063 ATCGWTAN 1.62 0.571851 5.75009 AAACSAAM 4.38 2.44273 5.70393 YAGKTCAV 14.0 10.3961 5.66188 TGAGYYAY 7.58 4.95541 5.59112 ASSCAMDG 21.56 17.1987 5.49163 YGSMTGCB 14.36 10.7333 5.48144 CRCTTCCB 5.58 3.37364 5.4304 ATTWYTAA 4.64 2.66278 5.26822 TWCAAAAB 9.44 6.52474 5.2371 WARTATWK 11.84 8.56925 5.21973 TCCCDMCS 7.42 4.85805 5.19022 TWTACKSW 8.76 5.96774 5.11542 TGRKTAAS 5.78 3.56368 4.94214 ACACYGTR 5.16 3.09142 4.77418 KAATTDCR 6.16 3.87813 4.75053 GMGCMKMG 7.56 5.00928 4.74694 AAMCAYWS 20.96 16.7637 4.73007 CGWSYYCG 2.5 1.15525 4.68121 CHYMACSK 18.24 14.2982 4.67703 TGTGBGTG 6.74 4.3599 4.53248 CTTCSTSB 11.12 8.02869 4.48981 AYTGRMTK 15.7 12.0588 4.3782 ACCWCVSY 14.18 10.7279 4.23487 GKTGAMWG 8.92 6.18898 4.18376 CCCSGCGN 3.0 1.52017 4.17026 TTTGWMCC 5.98 3.78473 4.08219 ATCAATYN 5.84 3.67453 4.06519 ADTKAMYC 14.98 11.4594 4.06073 AARAMAAG 8.92 6.20832 3.98434 AAWTMAAA 7.06 4.66627 3.96641 ADBCSTRG 19.26 15.3393 3.88262 STMACCWN 19.6 15.6615 3.80169 WCCMCCAC 3.76 2.09377 3.70973 GVATTCTG 3.84 2.15464 3.68507 GGMAVGAV 17.96 14.1959 3.62656 CBTGSGAN 15.16 11.6848 3.57001 GGGAYWYG 5.9 3.76178 3.54356 ASTCSSAG 6.04 3.87773 3.49628 GACMTTTM 5.2 3.21777 3.38495 AKAYGGCG 1.46 0.544458 3.2077 KHCCGKCG 2.3 1.08334 3.09446 CCGDCGDG 1.96 0.862505 2.97682 AGATAMGV 3.06 1.62042 2.97427 RRACTACG 1.44 0.540004 2.93508 GCAHWCAS 13.82 10.5786 2.9203 TKAHTTTK 16.62 13.0883 2.91055 MACYGWAB 11.9 8.90958 2.72513 TGWYGTMA 7.92 5.49222 2.7089 GAMYTGWR 14.98 11.6518 2.63791 CRGGGCYD 11.42 8.50058 2.63604 GGGGHTSG 4.16 2.46365 2.57772 CCAHGTGR 6.24 4.1254 2.4434 GVCTYGGH 11.24 8.37347 2.38731 TAGCVWWK 11.0 8.16438 2.38508 TGKYTGTC 6.4 4.26372 2.35624 TARTTCTY 3.54 2.00927 2.31563 AWAAGMWA 9.44 6.8296 2.25551 GWGGRGSG 6.4 4.27666 2.20743 TCSGNCGM 2.26 1.09521 2.14321 CGKKCSGB 3.68 2.12519 2.13917 RYGAAAYG 4.56 2.81299 2.00322 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete