Motif finder

Task #3643 - 9087a5a0

Status Start End Updated Duration Sequences Logs Task Bundle
finished 5 months ago 5 months ago 5 months ago 10 minutes (607sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
TAWAAWTA 29.5 3.35416 902.309
AWAAWTAR 32.92 8.36783 517.225
ATTKWTAR 24.9 5.16518 462.389
KCKAWTTH 35.64 11.6846 413.248
AAWTMGMH 34.84 11.8793 379.292
TGAKTCAB 23.26 5.58628 367.453
AATMGMHN 43.1 22.6894 214.076
TATHTTDR 29.66 13.38 187.004
RRCARBTG 43.42 24.0994 186.461
WTTDTAGN 32.46 16.2091 165.558
GAMTCABN 31.28 16.915 126.567
RCARYTGV 36.52 21.2858 123.834
YGWGGTHD 29.2 16.4804 100.887
GGGHGGGG 8.06 2.18707 96.8145
CKATTTTR 9.88 3.22268 93.0371
WWWRTAWC 22.26 11.6034 90.2447
DACCDCAN 31.24 19.1556 82.2397
GGGSHSGG 14.38 6.34003 81.0186
TTDTAGNH 33.5 21.6255 73.3025
AAWTAWMB 24.48 14.7732 62.3171
GGVSGHGG 14.28 7.00101 61.4473
TGACNTCA 9.5 3.91422 57.3093
AWVSAAWS 31.74 21.2859 56.2807
ATWYYTRK 35.24 24.4264 55.4472
TGASTAAB 9.1 3.76943 53.7576
GGDAHGNR 39.92 28.9702 51.6156
WRSAATGB 23.28 14.4712 51.3801
AGTMAYYN 29.6 19.9246 49.6654
TAKKTMKG 13.4 6.9287 48.4922
ACCWCRRN 26.34 17.2224 48.4639
TATTVWTA 7.84 3.22781 45.4074
GGHGSGGN 16.28 9.28567 44.7025
WAMMTAVK 26.06 17.3989 42.8537
KWRGTYAB 35.54 25.7517 42.8337
ASYTGYTN 40.04 29.969 41.8312
WHGTMAYY 28.12 19.4222 39.7571
GWAHGYRN 32.84 23.5952 39.7561
TGAGNTCA 8.82 4.06882 39.6471
DTBGYTTB 36.2 27.0412 35.5195
CATTSYWV 22.84 15.3945 33.3651
RVGGHMGG 21.02 13.8643 33.2578
RCAGRTGS 13.86 8.07152 33.1073
AWAMATAC 5.14 1.9585 31.7268
TTTTTAWM 8.74 4.35253 31.2696
CARYTGYR 19.7 12.9267 31.0662
MGDAVGBR 38.36 29.5354 30.7137
ASYCAVRG 34.74 26.1896 30.7004
GDASGNMG 18.66 12.1025 30.5269
DCAMTGRV 33.14 24.8144 29.852
AADTMGKH 17.12 10.9529 28.8985
AWKAATMG 7.94 3.90424 28.617
TDSAAASN 32.42 24.3269 28.2244
KKCKTWGD 24.34 17.1921 27.467
AGAMMTAG 6.32 2.84833 27.3333
AAAMKAAA 8.14 4.15347 26.1774
ATMGMHCN 22.26 15.5426 25.7384
WBGCWYKG 32.68 24.8372 25.6636
GGNMGGGH 18.42 12.3421 24.8742
RSAWACVD 33.16 25.3797 24.7362
CGDSSGYG 4.26 1.64519 23.9342
WGGGDKBG 31.22 23.7447 23.4612
ATDRCRWC 12.0 7.24737 22.8734
GTCMCYRN 27.42 20.4821 21.8088
GGVHGGAG 13.36 8.41202 21.6983
CWYTGWRS 32.36 25.0196 21.4448
WYGAWSTM 12.6 7.84141 21.1245
GCSRRGCS 8.98 5.02824 21.0491
ATTANTAG 4.58 1.93363 21.0088
RGRCMGMK 27.74 20.9124 20.5077
ATTKWAAG 5.44 2.5208 20.3723
AYABACAC 8.82 4.948 20.3247
ACTCAVTB 10.8 6.56332 18.8795
RWKCYARG 28.76 22.0798 18.3915
GGGTRHGK 10.0 5.97199 18.3259
TTTVGAAN 12.62 8.07896 18.0533
AGGTCABN 13.7 8.9632 18.0404
YGTMAYYD 26.94 20.4694 18.0274
GCGYBCGB 2.48 0.770857 18.0109
MNCAAASV 34.0 27.0343 17.4286
CWVRGACV 27.9 21.4228 17.3235
RGNGAMMG 23.0 17.0626 16.8955
DGCRYBYG 29.26 22.7253 16.8251
DRSAKATG 20.92 15.2376 16.7753
ATTBATAY 4.32 1.91636 16.6045
GAMCTWRR 10.1 6.1735 16.4498
WAYHTAGM 16.82 11.7605 15.9869
WKCDATTM 12.9 8.48264 15.8008
AATKSMAN 22.88 17.1074 15.5248
KCDATTMH 18.32 13.14 15.0907
DASSNACR 34.1 27.4613 14.9248
CGGNGCSG 1.7 0.451175 13.8439
GCGKCGSB 2.1 0.65669 13.7372
ATTTTSRG 7.32 4.21204 13.371
TTNGAAAS 7.48 4.36392 12.8776
RWCRMWTG 16.62 11.892 12.8687
RVGACMGN 27.92 22.0219 12.6964
TCABTGYB 20.7 15.5126 12.4826
CMARGYMS 25.48 19.8284 12.3865
WRSMATCB 26.58 20.8401 12.3325
AAWYTTAG 5.82 3.15692 12.1687
TAGCHCNK 20.04 14.9895 11.9353
KCGCKBCG 1.56 0.418437 11.7328
GBHYGKGG 27.02 21.326 11.7119
TTVCHWAR 27.54 21.8069 11.6924
WAVATACM 8.4 5.17029 11.4916
GCCTRGVH 21.28 16.1517 11.4493
ACCDYAYS 11.28 7.52563 11.1851
GYMATCKN 15.54 11.1766 10.7402
GABTAAGH 6.34 3.64046 10.4609
ACTYRRVM 31.7 25.8531 10.4335
GTGSGBGK 8.48 5.35139 9.84851
GCAHGYGH 9.92 6.52478 9.75778
RSRAKCCR 18.98 14.3076 9.72449
AAWYAWMA 16.24 11.8951 9.70741
CGMKSCGK 2.06 0.728426 9.59231
CGCDBGCG 1.36 0.361357 9.33936
GGCSGHGC 2.58 1.0517 9.16687
RGGBMGGH 22.32 17.3855 9.09945
TASAAWTR 6.64 3.96094 8.99856
AATWACYH 9.32 6.10348 8.90629
RBRGTRMG 21.38 16.5697 8.83556
WSCCTRGV 28.2 22.8675 8.54466
GRANGGAM 13.4 9.58868 8.26427
DAGDACAD 21.92 17.1437 8.19627
BCRGGGCN 19.28 14.7833 8.03969
TAWWTMAA 8.16 5.23977 7.92469
CVGGGHVG 15.76 11.6769 7.91226
CKCKCTCS 4.3 2.29258 7.41727
RNMCAYTG 27.82 22.6938 7.36842
GCYCYGRS 16.72 12.6021 7.2436
AKWTMRAA 12.56 8.97745 7.20423
RRCATTSY 14.86 10.9705 7.19884
WSGYARKG 19.7 15.3072 6.92153
GASSGHGR 10.68 7.40815 6.90958
TCWCBWCC 11.02 7.70832 6.77454
AACTBRAN 15.06 11.2029 6.70521
ATKMGHAA 7.6 4.88829 6.63551
TCRKTWTC 5.42 3.17293 6.62557
CADRCACN 22.68 18.0585 6.61556
GDSSGGCG 2.7 1.22056 6.46325
TGAKTCRA 2.84 1.31639 6.39105
TCCVARMM 22.28 17.7269 6.37881
ADVGAYKA 16.46 12.4884 6.29671
CACAYACR 5.98 3.63251 6.21285
RCCAVYTG 17.04 13.0227 6.15258
AGYAACRR 6.4 3.97781 5.99303
ACYGWAVB 14.32 10.6707 5.71182
TGAMCTWR 6.2 3.84434 5.65034
DDCCTYTG 22.38 17.929 5.63186
GSCAMVGM 21.7 17.3072 5.62387
ATWDKTAC 6.08 3.75868 5.52415
GDTSGMTY 10.7 7.57112 5.42603
TGSGNABG 14.38 10.7693 5.32925
CTVGGDHK 31.64 26.6585 5.13516
TDCGGTNH 6.02 3.74423 5.06361
GADDCMAG 19.02 14.9846 4.81343
RARGYMGM 20.78 16.603 4.70397
GSSTHSGG 9.52 6.66528 4.48252
CGGKMGSG 1.74 0.681854 4.29077
WAMGAYAN 13.2 9.86521 4.23442
CTCMVTGG 9.08 6.33321 4.08503
RGKGCTSG 9.38 6.59424 4.00746
TATVAWTG 3.96 2.22619 4.00005
TWNGYAAK 13.98 10.5877 3.94579
CCYSGSCK 9.94 7.07756 3.93274
TTRYATCA 3.12 1.62022 3.85188
ARAGSVMG 20.96 16.9184 3.72715
AGSTGCRR 9.04 6.34113 3.66369
GRCCTSGR 7.02 4.66422 3.60541
AABAAAAC 4.42 2.60676 3.45847
AYCWYTGH 19.34 15.4824 3.42085
GCRBGCAB 10.82 7.89208 3.38576
WRSSAMGM 31.7 27.0494 3.33053
RRTTACRS 6.68 4.41727 3.23907
ACATCAYS 4.16 2.42442 3.20033
AGAMMKAM 12.66 9.52657 3.13003
ATAKCMWK 13.38 10.1635 3.11371
TTTYAAVV 16.32 12.7897 3.10403
MAGTATSN 7.68 5.25489 3.09638
GSRSSGTG 8.04 5.55548 3.09615
ADAHGSAA 13.3 10.1031 3.03329
ACBYACRH 13.5 10.2815 3.0221
TCKCTCTC 2.92 1.51937 2.98625
TAKKTTCR 4.28 2.53674 2.87394
ASKCATRY 11.9 8.89502 2.84396
ACKWCMTA 3.32 1.81673 2.8384
GCARAGSV 14.16 10.8946 2.81797
RGGARASR 19.72 15.9276 2.7993
TAMAAYAA 4.5 2.7255 2.58953
GSCSKHCG 3.1 1.67163 2.54032
RGABANGG 19.46 15.7454 2.44922
ACABYYGT 11.98 9.01544 2.43766
GDTSGYAK 11.5 8.6002 2.39202
CARYTGAG 6.68 4.4975 2.31502
TGGVATTC 4.1 2.43715 2.27403
RGWCARTG 8.96 6.41718 2.26921
GRACWMAG 9.4 6.79877 2.22369
GKAWCWRR 19.22 15.5758 2.13691
TAGTMABR 8.5 6.04079 2.12351
GKAKCCRR 9.26 6.70143 2.01684

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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