Task #3643 - 9087a5a0 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 10 minutes (607sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TAWAAWTA 29.5 3.35416 902.309 AWAAWTAR 32.92 8.36783 517.225 ATTKWTAR 24.9 5.16518 462.389 KCKAWTTH 35.64 11.6846 413.248 AAWTMGMH 34.84 11.8793 379.292 TGAKTCAB 23.26 5.58628 367.453 AATMGMHN 43.1 22.6894 214.076 TATHTTDR 29.66 13.38 187.004 RRCARBTG 43.42 24.0994 186.461 WTTDTAGN 32.46 16.2091 165.558 GAMTCABN 31.28 16.915 126.567 RCARYTGV 36.52 21.2858 123.834 YGWGGTHD 29.2 16.4804 100.887 GGGHGGGG 8.06 2.18707 96.8145 CKATTTTR 9.88 3.22268 93.0371 WWWRTAWC 22.26 11.6034 90.2447 DACCDCAN 31.24 19.1556 82.2397 GGGSHSGG 14.38 6.34003 81.0186 TTDTAGNH 33.5 21.6255 73.3025 AAWTAWMB 24.48 14.7732 62.3171 GGVSGHGG 14.28 7.00101 61.4473 TGACNTCA 9.5 3.91422 57.3093 AWVSAAWS 31.74 21.2859 56.2807 ATWYYTRK 35.24 24.4264 55.4472 TGASTAAB 9.1 3.76943 53.7576 GGDAHGNR 39.92 28.9702 51.6156 WRSAATGB 23.28 14.4712 51.3801 AGTMAYYN 29.6 19.9246 49.6654 TAKKTMKG 13.4 6.9287 48.4922 ACCWCRRN 26.34 17.2224 48.4639 TATTVWTA 7.84 3.22781 45.4074 GGHGSGGN 16.28 9.28567 44.7025 WAMMTAVK 26.06 17.3989 42.8537 KWRGTYAB 35.54 25.7517 42.8337 ASYTGYTN 40.04 29.969 41.8312 WHGTMAYY 28.12 19.4222 39.7571 GWAHGYRN 32.84 23.5952 39.7561 TGAGNTCA 8.82 4.06882 39.6471 DTBGYTTB 36.2 27.0412 35.5195 CATTSYWV 22.84 15.3945 33.3651 RVGGHMGG 21.02 13.8643 33.2578 RCAGRTGS 13.86 8.07152 33.1073 AWAMATAC 5.14 1.9585 31.7268 TTTTTAWM 8.74 4.35253 31.2696 CARYTGYR 19.7 12.9267 31.0662 MGDAVGBR 38.36 29.5354 30.7137 ASYCAVRG 34.74 26.1896 30.7004 GDASGNMG 18.66 12.1025 30.5269 DCAMTGRV 33.14 24.8144 29.852 AADTMGKH 17.12 10.9529 28.8985 AWKAATMG 7.94 3.90424 28.617 TDSAAASN 32.42 24.3269 28.2244 KKCKTWGD 24.34 17.1921 27.467 AGAMMTAG 6.32 2.84833 27.3333 AAAMKAAA 8.14 4.15347 26.1774 ATMGMHCN 22.26 15.5426 25.7384 WBGCWYKG 32.68 24.8372 25.6636 GGNMGGGH 18.42 12.3421 24.8742 RSAWACVD 33.16 25.3797 24.7362 CGDSSGYG 4.26 1.64519 23.9342 WGGGDKBG 31.22 23.7447 23.4612 ATDRCRWC 12.0 7.24737 22.8734 GTCMCYRN 27.42 20.4821 21.8088 GGVHGGAG 13.36 8.41202 21.6983 CWYTGWRS 32.36 25.0196 21.4448 WYGAWSTM 12.6 7.84141 21.1245 GCSRRGCS 8.98 5.02824 21.0491 ATTANTAG 4.58 1.93363 21.0088 RGRCMGMK 27.74 20.9124 20.5077 ATTKWAAG 5.44 2.5208 20.3723 AYABACAC 8.82 4.948 20.3247 ACTCAVTB 10.8 6.56332 18.8795 RWKCYARG 28.76 22.0798 18.3915 GGGTRHGK 10.0 5.97199 18.3259 TTTVGAAN 12.62 8.07896 18.0533 AGGTCABN 13.7 8.9632 18.0404 YGTMAYYD 26.94 20.4694 18.0274 GCGYBCGB 2.48 0.770857 18.0109 MNCAAASV 34.0 27.0343 17.4286 CWVRGACV 27.9 21.4228 17.3235 RGNGAMMG 23.0 17.0626 16.8955 DGCRYBYG 29.26 22.7253 16.8251 DRSAKATG 20.92 15.2376 16.7753 ATTBATAY 4.32 1.91636 16.6045 GAMCTWRR 10.1 6.1735 16.4498 WAYHTAGM 16.82 11.7605 15.9869 WKCDATTM 12.9 8.48264 15.8008 AATKSMAN 22.88 17.1074 15.5248 KCDATTMH 18.32 13.14 15.0907 DASSNACR 34.1 27.4613 14.9248 CGGNGCSG 1.7 0.451175 13.8439 GCGKCGSB 2.1 0.65669 13.7372 ATTTTSRG 7.32 4.21204 13.371 TTNGAAAS 7.48 4.36392 12.8776 RWCRMWTG 16.62 11.892 12.8687 RVGACMGN 27.92 22.0219 12.6964 TCABTGYB 20.7 15.5126 12.4826 CMARGYMS 25.48 19.8284 12.3865 WRSMATCB 26.58 20.8401 12.3325 AAWYTTAG 5.82 3.15692 12.1687 TAGCHCNK 20.04 14.9895 11.9353 KCGCKBCG 1.56 0.418437 11.7328 GBHYGKGG 27.02 21.326 11.7119 TTVCHWAR 27.54 21.8069 11.6924 WAVATACM 8.4 5.17029 11.4916 GCCTRGVH 21.28 16.1517 11.4493 ACCDYAYS 11.28 7.52563 11.1851 GYMATCKN 15.54 11.1766 10.7402 GABTAAGH 6.34 3.64046 10.4609 ACTYRRVM 31.7 25.8531 10.4335 GTGSGBGK 8.48 5.35139 9.84851 GCAHGYGH 9.92 6.52478 9.75778 RSRAKCCR 18.98 14.3076 9.72449 AAWYAWMA 16.24 11.8951 9.70741 CGMKSCGK 2.06 0.728426 9.59231 CGCDBGCG 1.36 0.361357 9.33936 GGCSGHGC 2.58 1.0517 9.16687 RGGBMGGH 22.32 17.3855 9.09945 TASAAWTR 6.64 3.96094 8.99856 AATWACYH 9.32 6.10348 8.90629 RBRGTRMG 21.38 16.5697 8.83556 WSCCTRGV 28.2 22.8675 8.54466 GRANGGAM 13.4 9.58868 8.26427 DAGDACAD 21.92 17.1437 8.19627 BCRGGGCN 19.28 14.7833 8.03969 TAWWTMAA 8.16 5.23977 7.92469 CVGGGHVG 15.76 11.6769 7.91226 CKCKCTCS 4.3 2.29258 7.41727 RNMCAYTG 27.82 22.6938 7.36842 GCYCYGRS 16.72 12.6021 7.2436 AKWTMRAA 12.56 8.97745 7.20423 RRCATTSY 14.86 10.9705 7.19884 WSGYARKG 19.7 15.3072 6.92153 GASSGHGR 10.68 7.40815 6.90958 TCWCBWCC 11.02 7.70832 6.77454 AACTBRAN 15.06 11.2029 6.70521 ATKMGHAA 7.6 4.88829 6.63551 TCRKTWTC 5.42 3.17293 6.62557 CADRCACN 22.68 18.0585 6.61556 GDSSGGCG 2.7 1.22056 6.46325 TGAKTCRA 2.84 1.31639 6.39105 TCCVARMM 22.28 17.7269 6.37881 ADVGAYKA 16.46 12.4884 6.29671 CACAYACR 5.98 3.63251 6.21285 RCCAVYTG 17.04 13.0227 6.15258 AGYAACRR 6.4 3.97781 5.99303 ACYGWAVB 14.32 10.6707 5.71182 TGAMCTWR 6.2 3.84434 5.65034 DDCCTYTG 22.38 17.929 5.63186 GSCAMVGM 21.7 17.3072 5.62387 ATWDKTAC 6.08 3.75868 5.52415 GDTSGMTY 10.7 7.57112 5.42603 TGSGNABG 14.38 10.7693 5.32925 CTVGGDHK 31.64 26.6585 5.13516 TDCGGTNH 6.02 3.74423 5.06361 GADDCMAG 19.02 14.9846 4.81343 RARGYMGM 20.78 16.603 4.70397 GSSTHSGG 9.52 6.66528 4.48252 CGGKMGSG 1.74 0.681854 4.29077 WAMGAYAN 13.2 9.86521 4.23442 CTCMVTGG 9.08 6.33321 4.08503 RGKGCTSG 9.38 6.59424 4.00746 TATVAWTG 3.96 2.22619 4.00005 TWNGYAAK 13.98 10.5877 3.94579 CCYSGSCK 9.94 7.07756 3.93274 TTRYATCA 3.12 1.62022 3.85188 ARAGSVMG 20.96 16.9184 3.72715 AGSTGCRR 9.04 6.34113 3.66369 GRCCTSGR 7.02 4.66422 3.60541 AABAAAAC 4.42 2.60676 3.45847 AYCWYTGH 19.34 15.4824 3.42085 GCRBGCAB 10.82 7.89208 3.38576 WRSSAMGM 31.7 27.0494 3.33053 RRTTACRS 6.68 4.41727 3.23907 ACATCAYS 4.16 2.42442 3.20033 AGAMMKAM 12.66 9.52657 3.13003 ATAKCMWK 13.38 10.1635 3.11371 TTTYAAVV 16.32 12.7897 3.10403 MAGTATSN 7.68 5.25489 3.09638 GSRSSGTG 8.04 5.55548 3.09615 ADAHGSAA 13.3 10.1031 3.03329 ACBYACRH 13.5 10.2815 3.0221 TCKCTCTC 2.92 1.51937 2.98625 TAKKTTCR 4.28 2.53674 2.87394 ASKCATRY 11.9 8.89502 2.84396 ACKWCMTA 3.32 1.81673 2.8384 GCARAGSV 14.16 10.8946 2.81797 RGGARASR 19.72 15.9276 2.7993 TAMAAYAA 4.5 2.7255 2.58953 GSCSKHCG 3.1 1.67163 2.54032 RGABANGG 19.46 15.7454 2.44922 ACABYYGT 11.98 9.01544 2.43766 GDTSGYAK 11.5 8.6002 2.39202 CARYTGAG 6.68 4.4975 2.31502 TGGVATTC 4.1 2.43715 2.27403 RGWCARTG 8.96 6.41718 2.26921 GRACWMAG 9.4 6.79877 2.22369 GKAWCWRR 19.22 15.5758 2.13691 TAGTMABR 8.5 6.04079 2.12351 GKAKCCRR 9.26 6.70143 2.01684 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete