Task #3644 - 1dbde836 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 11 minutes (697sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TGAKTCAB 38.32 6.78084 880.428 TGAMTMAB 44.7 10.002 860.896 GAYTCABN 43.02 16.2824 423.973 HACKWCCB 36.1 14.923 287.677 ACKWCCBB 39.32 17.3145 284.935 GARTCABN 47.2 24.4644 255.339 GGAMVTDR 45.76 23.7742 242.214 RVMGGWMG 46.0 24.1637 237.197 AAVVGGAA 29.5 11.9302 231.615 GGGHGGGG 13.58 3.31847 197.231 ACTMAGCD 15.96 4.89263 176.266 AKTCAYBB 43.78 25.8654 154.902 GGGGHGGG 12.24 3.31847 154.639 TKAYSTMA 20.38 8.9728 123.789 TYCDSTTY 35.72 21.0165 116.119 TTASTCAB 12.98 4.96812 96.4393 GGGGGHGG 9.96 3.20651 95.8806 RTKABGTM 18.46 8.63201 95.3962 GGCGGRGC 6.62 1.56733 92.3794 RACCWYAR 18.28 8.87337 85.7359 AANHGAAA 17.68 8.58008 82.3165 GASNWAGV 41.18 27.831 81.3029 RGGAMMTR 24.72 14.1683 76.524 CGCNTSCG 5.84 1.44699 75.7953 TRVGKWMG 23.44 13.3795 72.3136 TGACNTCA 14.12 6.61159 68.4797 STMMGCAN 30.48 19.3807 68.2381 GAADYGRB 30.78 19.7693 66.1883 GGBYSGAG 11.98 5.24517 66.0654 AGKWMGVD 39.92 27.9964 63.5214 GCGGKGCS 5.4 1.43954 62.8438 TDTGGWTW 11.1 4.79115 62.2717 RKTKCSTB 39.32 27.6284 61.2784 ACKCABNS 36.22 24.885 60.8018 TYSSTHYC 37.94 26.5211 59.5262 CGGNKCGV 8.48 3.22164 59.2837 TATYTWWA 7.04 2.40848 57.9026 ARGGGDMG 17.38 9.59018 54.8629 AKTCABYA 17.94 10.0611 54.0537 RCGTYACS 5.84 1.83291 53.7984 TYBAWTTH 21.56 12.9519 53.3345 GCGDKCGV 6.38 2.14311 53.2136 GTKGHTWN 29.58 19.6606 52.9824 CGGYSBCG 6.1 1.99317 52.9377 GGWSSGGV 18.78 10.9653 49.5042 GTCAYBSD 39.86 29.1494 48.9354 RTKACMTM 14.26 7.77025 44.2406 CGSKMCGS 6.8 2.61685 44.1942 CGWKCGHV 5.88 2.07391 44.0727 AKRWBSAA 33.82 24.1471 43.4572 GGARGTRY 12.3 6.36732 43.2717 TKTTKAWW 13.36 7.20751 42.0377 ASGSWVGR 32.06 22.7267 41.7128 TVSSTHBG 36.62 26.901 40.9975 AAWTMRAD 13.5 7.45922 39.1706 GCKWCCKK 13.72 7.63388 39.0157 AWKSAGAA 14.12 7.96678 38.4904 TASBCAHB 25.24 17.1282 37.3322 ANHGAAAS 21.9 14.3306 36.8591 ANASGMAM 28.08 19.6566 36.5608 TGGWTHBD 28.02 19.607 36.5256 RBCGHGCG 6.3 2.55037 35.89 TTRARNAA 16.32 9.86375 35.4426 TMAGCANN 37.28 28.0543 35.3213 TCWCBRTS 21.32 13.9868 34.9585 AGAMMKRR 30.06 21.5783 34.6102 AAWDSRGA 24.62 16.8265 34.4888 GGGHWSGR 20.96 13.769 33.8485 TCSGMCCS 4.76 1.71664 32.3478 GGWMGMBR 28.8 20.7653 31.292 GAVGYHVG 38.12 29.3315 30.5319 GSASSGWG 13.66 8.13833 29.4149 ACMNWGCM 29.28 21.4263 28.8674 CCTSTTTB 13.54 8.09124 28.6575 AWBCAAHB 23.88 16.7423 28.014 GRCKWCCK 13.8 8.36043 27.6506 GGCGRCGS 4.3 1.57035 27.5708 TTYGWWWN 20.78 14.1181 27.5388 WKACMHAG 22.16 15.3523 26.9143 GGMTHBGV 27.88 20.4317 26.2737 CGHMCSSG 6.56 3.07387 25.6361 AGGTCHNN 27.9 20.6599 24.2085 GWCMSWGC 20.76 14.3922 24.1505 YRGAGABV 30.5 23.0329 23.9706 RCCNAGDS 34.5 26.717 23.8412 AKTCRBAS 19.42 13.3066 23.4641 GCMYGCSC 8.68 4.68256 23.3465 ATADWTAV 7.42 3.78258 23.0549 TTDTYTTW 14.26 9.05824 22.8433 TGKGBGTG 11.42 6.79693 22.8026 GWGSGHGG 13.8 8.68933 22.7926 CGSKMGSG 6.92 3.44848 22.6084 TTGADTCA 3.66 1.33506 22.189 GKAKGYGG 8.1 4.32518 21.9901 CHAGGCWN 24.9 18.2203 21.9146 GCGDCGGS 4.16 1.65774 21.4022 CGGMCSGS 4.18 1.67092 21.3746 GHKCGDCG 4.78 2.05741 21.1447 GADCBRAB 23.52 17.1888 20.0581 TBTDGSTW 25.88 19.2949 20.0014 GBTTTSDD 36.4 28.9891 19.7 SBTGGAGV 20.18 14.3096 19.61 TGYGTMAY 10.82 6.55378 19.2628 WGSGGYGG 9.04 5.20803 18.6973 CGANDRCG 4.66 2.0876 18.0551 TBCSTGCN 22.94 16.8864 18.0396 RTGAMTYG 7.64 4.19804 17.8951 ASCYAMDK 31.34 24.5229 17.7613 RRCCTKGV 22.14 16.2348 17.5114 ATYTTNAA 6.64 3.49391 17.3197 CGMKKCGS 5.52 2.70149 17.2658 GGGGHHSG 13.32 8.71323 17.2461 CASGSWVG 20.36 14.716 17.0759 CTAGAGCG 1.36 0.265698 16.4034 AGAKMKRM 25.06 18.9978 16.0778 GCGCDCGR 2.88 1.04284 15.8838 TCSWCCCM 9.22 5.54119 15.562 TTGCMYAA 4.5 2.09355 15.0631 TCATDSTK 16.88 11.911 14.9444 WTGGVTHB 23.84 18.0349 14.924 WTASMRWW 22.84 17.1528 14.8082 RGADVCAG 28.24 22.1107 14.2676 AYACMYAC 7.14 4.02571 14.2362 THKDTCTW 18.28 13.2074 14.088 GCHYKGCY 25.44 19.6648 13.3909 DGBCTKAG 21.86 16.4904 12.9644 GTCHCSAK 10.5 6.76097 12.7399 GCKCSGKG 6.1 3.34881 12.4426 GCSKMCGG 4.2 1.99519 12.426 ACATCAYN 9.8 6.22968 12.2854 CTGRRYTV 23.64 18.2166 11.9256 WGGGCDGG 11.46 7.63733 11.6257 GMGRTGRC 9.38 5.94626 11.5566 AYGTMAYH 17.84 13.0954 11.524 CGTMGSSG 2.46 0.922158 11.1141 TGSVTDKC 24.34 18.9686 11.0109 TTTYAAAK 4.78 2.46321 10.9774 AGCSAATC 1.62 0.463106 10.8757 AGCYCHGS 18.68 13.9222 10.7443 TGAGYWAY 7.26 4.33381 10.6592 KGGABDMG 21.54 16.5292 10.277 RKGCKTKG 12.48 8.60895 10.2702 GKCSGBCG 4.76 2.48848 10.1534 AVGCYMCG 6.56 3.83473 10.0208 CKWCCKGR 12.7 8.82526 9.94444 TWSAAWKG 9.7 6.3451 9.75446 TGTNYGTW 8.98 5.76159 9.73839 CGAKCSGN 3.1 1.36493 9.71225 TYWRSTTC 17.66 13.1515 9.6173 GSAAKTCR 8.92 5.72419 9.59479 DWTMAAGD 17.18 12.7432 9.49101 AASTDGAW 9.44 6.15713 9.45437 GYSTHYGY 23.62 18.5301 9.37598 RTCDTAGY 6.24 3.63659 9.26347 GWGCGHGC 3.28 1.51429 8.8853 CWCYVTGG 17.02 12.6794 8.82192 TDACGMAH 4.98 2.71651 8.81773 SRGACAGN 17.68 13.2735 8.72721 WRYARTTM 15.02 10.9441 8.68632 RKNCAGTG 18.16 13.7185 8.56628 GGKSSGYG 9.8 6.54462 8.34207 ASCNAMCR 14.4 10.4544 8.23976 GCYBGGAK 10.96 7.5308 8.11007 WTHCKGTM 13.86 10.0284 7.85428 KGTCCCBD 11.66 8.16068 7.69393 CMGSTCBR 13.58 9.81011 7.63346 TAWRTAYV 6.46 3.91358 7.5964 TTCCCYAW 6.68 4.08964 7.53892 GCMCKKGG 8.28 5.36828 7.52358 AKMAAMKR 22.22 17.5233 7.42098 TGTTTYVW 14.02 10.2287 7.28759 RNTSGMTK 29.4 24.1928 7.22717 CMKGGMTB 23.1 18.376 7.07759 AAVAAWAG 9.26 6.21154 7.0333 ATTKWTAK 4.36 2.36053 6.94834 GVSCTKCG 5.86 3.49121 6.93871 WATGCAAD 4.56 2.51869 6.74321 ACKCAHYW 14.38 10.6197 6.59918 GAYTCAAN 5.1 2.93458 6.54138 TCDNCCTK 25.2 20.4431 6.19093 ACCCCRCC 2.6 1.16934 6.06611 AGCGYCSS 4.32 2.37954 6.04318 ASRGWGMG 16.16 12.2841 5.80283 CGKCWGCG 2.5 1.12115 5.58785 AGRYGGVG 10.36 7.26702 5.58066 GCCAATCR 1.56 0.546678 5.38196 AABNAGGA 17.2 13.2682 5.36708 TGCGCRYG 2.2 0.935347 5.34888 GGSTAGMG 3.16 1.57906 5.34531 TGAAHTVW 12.92 9.50434 5.22259 TRMGGTYY 7.2 4.69854 4.95371 AYKTSCTA 6.54 4.18271 4.73854 GKABVGAH 20.02 15.9319 4.55193 ASWWSGCA 9.62 6.7553 4.42747 GTTTRTWH 6.96 4.54766 4.41377 GACKAATN 3.26 1.69651 4.34085 GGHCGCKC 3.7 2.01691 4.30669 TTGCWWTK 7.54 5.03117 4.29951 ATWMRYAT 5.48 3.38016 4.20025 YTGGABVR 23.54 19.2393 4.09732 AGVATKHG 15.52 11.9525 3.97016 CCAATCRR 2.14 0.945016 3.94783 GGCKGGMC 5.54 3.45504 3.8152 TGTSGTMD 8.68 6.0279 3.76433 GRCCTCSG 2.78 1.38504 3.75137 GCCGMMCG 1.68 0.663488 3.67122 MCTRGGTN 9.56 6.78719 3.6128 AWNTACVA 8.24 5.67789 3.56785 TGAMTHKG 12.16 9.04138 3.51458 TGSCMTKG 9.02 6.34453 3.46108 RGAGMHSG 20.0 16.0954 3.36085 AGGCMRAG 6.46 4.22929 3.34416 CGMMKCGR 3.62 2.02055 3.16146 TTTTKWTC 5.18 3.22234 3.10167 WVMGAATD 15.94 12.4547 3.05544 TTTRRGGA 6.02 3.90109 2.99791 CTGTYTYR 9.32 6.65493 2.92238 MTGCSMWS 22.54 18.5247 2.82524 GGGTRTGK 4.38 2.61957 2.78426 GSTCTNGS 12.5 9.43343 2.75023 GCTVSGGH 12.54 9.47162 2.72675 RTCRCADG 11.9 8.9132 2.69571 ATTCTDAN 7.86 5.4445 2.68228 MARTGCTD 14.78 11.4695 2.66078 RAGGTCYN 8.64 6.11272 2.57613 ACWAHGRR 14.56 11.2857 2.56756 ARTAHMTA 4.02 2.35827 2.54958 GMARTGCB 11.62 8.68829 2.53018 TAWYTWWG 7.42 5.09303 2.51147 GYMATCWD 19.4 15.685 2.48238 GBCSGASG 5.32 3.37993 2.47569 GCASGCAK 4.4 2.65813 2.43717 YARCRRTD 21.24 17.3913 2.41023 ATWGTAHH 5.36 3.42218 2.34173 MYYTGGAS 13.66 10.5182 2.30859 GAGRHGGR 16.74 13.2897 2.28498 SGMMACGS 5.72 3.72416 2.18679 GWMRTTRC 8.92 6.40403 2.07346 GAGGKGCG 2.0 0.924307 2.01774 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete