Motif finder

Task #3637 - b9f65fa8

Status Start End Updated Duration Sequences Logs Task Bundle
finished 5 months ago 5 months ago 5 months ago 8 minutes (490sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
CSCCRCCS 9.78 3.39661 82.8078
TCACSYSA 13.3 5.82506 74.887
TYRTTDWY 9.32 3.48211 68.5108
CCRCCVCB 17.34 9.52789 55.4883
AVGGHMAR 26.4 16.9937 52.437
GCGWGCGN 5.92 1.926 51.4621
GGGKYGGG 6.82 2.43731 51.4467
CGCBYBCG 8.64 3.63311 48.754
RGDCAAVG 14.64 7.97497 45.8375
GGYGGSGH 12.9 6.70115 45.5103
ACRTACAC 5.66 1.98276 42.6127
GRCMAMGN 18.66 11.3288 41.8606
AAYRAMND 16.26 9.50259 40.6106
WHRAYRAM 15.1 8.64548 39.8315
WGCGHGCG 4.84 1.58945 39.6316
TGTAYGTG 6.68 2.76075 36.8249
NAAYAAVN 18.78 11.7753 36.5165
GVVCKTKG 24.1 16.2907 35.5953
ATACRVAC 6.8 2.89093 35.1624
GGCBAGCK 8.34 3.92314 34.9336
ACWCRTAC 6.12 2.50424 33.7136
CGTGCGYR 3.6 1.05166 33.5451
ARARCKRR 16.96 10.6076 31.9489
TDRMYTTK 19.12 12.4023 31.6226
CGDGRHCG 5.38 2.17075 29.4803
RASNTGGM 28.1 20.3388 29.2277
CGCBCCGV 5.08 2.00002 28.9827
GRBGAMRR 29.26 21.4175 28.7756
MTTGKYYN 28.04 20.4841 27.183
RTCACSYS 17.0 11.057 26.161
AGCTCTMC 5.46 2.33405 25.9449
RGGYAGRG 16.64 10.8635 24.7964
GCYSGCCS 9.54 5.3315 23.1917
TTVTTSBY 12.58 7.68685 23.1647
GRGDCRGR 25.96 19.1017 22.5073
CGKHGCGV 5.22 2.31663 21.9296
ACADACAW 6.1 2.91856 21.6609
AABNGVAA 13.36 8.45222 21.1379
CTCCDCCS 10.08 5.96657 19.3984
RRCAAGVB 23.9 17.6296 19.061
CTCWCCKG 10.82 6.57533 18.9361
GCGRCGRB 4.34 1.85331 18.8004
ACATGCAC 6.56 3.38127 18.4657
GVHAATSR 13.64 8.89154 18.3251
MVVTCACS 26.12 19.7364 17.9632
CGRDCGRB 6.0 3.019 17.6878
SVTCACCB 20.52 14.8162 17.4667
AGDWBRAA 14.52 9.6915 17.4286
TYRGRMRA 13.36 8.82816 16.2225
TDGCCCHG 12.92 8.48386 15.9909
AAWNAGAA 3.44 1.38104 15.8194
GGGCNAGC 7.18 3.97437 15.6993
GATTSGHY 4.1 1.80771 15.6138
GANAACWK 9.24 5.56301 15.4671
AABTHMRA 6.66 3.61247 15.2655
AKHGRYAR 21.48 15.9201 15.0116
TWTRWWTG 4.62 2.18483 14.8079
CGRCGDCS 2.86 1.068 14.4826
TTBRVTWW 11.38 7.37797 14.0156
CGDBTNCG 7.08 3.99476 13.9864
GRMTHBGG 17.54 12.5792 13.9455
AGRGTDGR 11.56 7.54896 13.7123
ARKMRARC 17.06 12.1966 13.6193
CCKMSTCS 11.08 7.17742 13.4515
GGTKGHMR 16.54 11.7765 13.3318
ACKTGAMY 4.24 1.99428 13.125
ATDCRTAC 3.16 1.29757 12.8799
AGAHAAVH 9.4 5.87995 12.6835
GACRGWVR 14.38 10.0334 12.2349
RRWMRATR 14.78 10.417 11.7933
GTKCGYGC 4.4 2.16458 11.6655
TNACBTRG 11.96 8.08 11.3047
GCGGSGCY 4.04 1.94189 11.0605
GCCMMSGH 18.8 14.0132 10.8751
TGTKCGTG 4.72 2.42699 10.8393
CSAATCRV 4.04 1.96383 10.5367
ACGCABAC 4.88 2.55783 10.5
ACACGCAC 3.66 1.72019 10.1518
TTTMRAAA 1.26 0.310245 9.59009
CGCYRCGV 4.8 2.5501 9.49278
ARGSCRGR 19.36 14.6767 9.46854
RCGGNCGR 3.98 1.97639 9.28371
GGYRGAGV 17.9 13.4028 9.2792
ATWTAVAH 4.04 2.01886 9.27116
TCGCCATW 1.2 0.289021 9.16599
AAMTCRHT 3.06 1.35882 9.15247
TTGKYTNS 14.22 10.2368 8.82113
GGHWGSGG 13.4 9.54404 8.69856
TTSAHSTC 5.98 3.49716 8.30118
CGGKHCGD 3.2 1.48511 8.25566
AYARTRGA 5.32 3.01081 8.06733
RAAGBCRK 16.0 11.8713 8.05318
TCARRGYC 8.56 5.56387 7.9209
GGWCRGSK 13.3 9.5467 7.84173
ATRTTKAY 2.54 1.06976 7.81525
CCAYSTYK 12.74 9.07741 7.73069
CATWVWCR 13.04 9.34775 7.60601
GTHSKTRG 8.28 5.37933 7.38485
TACRVACA 8.2 5.32003 7.31455
WRRCGRCG 3.6 1.8003 7.27425
DCGKKACG 2.56 1.10304 7.20253
AMTMRYTM 6.82 4.22606 7.16478
KCGCCVCG 2.94 1.35751 7.05662
GGGGYYVG 10.06 6.88256 6.9659
TGCGCDTG 3.96 2.07059 6.94976
GRGWWMGR 11.08 7.75695 6.79678
CGMASCGV 3.7 1.89499 6.74468
ACTTKGDA 3.52 1.77449 6.60344
TACRTAYA 1.8 0.655832 6.53565
TATGWGYG 6.8 4.26479 6.40844
GVRASAAM 11.0 7.73591 6.32278
TNGKCAAV 9.58 6.54641 6.26005
RCCACCAM 6.26 3.84868 6.25828
WTADTTMR 2.54 1.12893 6.09518
TWKTTBWA 3.3 1.64418 6.07645
GVCSTCGG 3.48 1.7722 6.04003
GMTVGCTY 9.44 6.4699 5.82153
GAKAKCTR 7.22 4.64782 5.7918
ACTGAAAA 1.1 0.294409 5.79046
TCHMSTTY 11.74 8.42462 5.76612
VGACRGAV 9.96 6.91223 5.75599
TCCTHVCC 11.24 8.00671 5.66823
AGCSAGBC 8.56 5.76735 5.49859
AACWAAVC 2.0 0.812805 5.24772
TGGMWARK 10.3 7.26148 5.12674
RRAHGAAK 8.66 5.88863 5.07083
TGTATATR 1.66 0.612849 5.05409
TTDTTCAG 1.72 0.650886 4.95911
WTDRWAAY 6.92 4.47235 4.94685
CAGGCAAR 3.88 2.11484 4.94572
GGCKYGGC 4.3 2.43292 4.82671
TGAAWAWC 1.6 0.590629 4.56396
WVTCACCH 18.74 14.769 4.54753
RGGCTVSG 12.28 9.02863 4.51666
RAHAAKTH 5.04 3.01579 4.51314
AATWTGGC 1.3 0.42534 4.35796
CGKYCGCS 2.28 1.02348 4.30963
CGDCADCG 2.38 1.08994 4.29928
ACARACAS 7.86 5.30568 4.17799
GAKRGYGG 8.46 5.80928 4.12463
ANTCAGGW 7.8 5.26591 4.06767
AAAATCAY 1.28 0.421144 4.05313
GGYASGGH 11.94 8.79468 3.98185
TATSCRTG 3.78 2.09819 3.89651
WSTTVTCC 7.82 5.30343 3.83467
WRCCMMGG 14.7 11.2431 3.8116
CTGCCCMK 10.36 7.45735 3.73789
ACGCATGC 1.92 0.813946 3.6436
TCACCWVC 9.58 6.80707 3.58515
AYCGDAMG 2.0 0.871672 3.45344
YACCACCR 4.84 2.93332 3.42429
GRMCCYGG 8.86 6.21525 3.40148
TNRGGTDG 14.3 10.943 3.38955
CGYCGGSB 3.6 1.99799 3.29996
TGAHAAMD 6.2 4.02231 3.299
AAMTTTAV 1.22 0.407126 3.20681
WWAATGAK 2.34 1.11159 3.06504
TYGCBNTC 10.2 7.39687 3.03344
AGCSAATD 2.74 1.38989 3.02558
TRGGYRGS 17.1 13.507 3.01474
CGGMYCGV 2.88 1.48957 3.01302
GGYGGGSG 4.16 2.43629 3.0095
ASAWATAM 2.5 1.22544 2.96119
AMGCSCCG 1.82 0.773128 2.95862
GCGCKYGC 3.22 1.74048 2.89598
TTSWYCTG 8.04 5.58675 2.77237
ADYTCKTC 5.0 3.11129 2.67306
TSRAYATY 4.76 2.935 2.49708
TTWTCTTB 2.26 1.08208 2.45795
RAYGGGGH 6.92 4.68579 2.42524
AAAWGARA 1.94 0.86949 2.41983
WCGRCGKH 3.16 1.7268 2.32676
TAANTAAK 1.08 0.350469 2.30174
CKTKGDAV 13.44 10.3307 2.24801
MTTRTTRD 4.28 2.57823 2.24145
CCRCCSAS 8.14 5.73152 2.16374
RYCACSAG 9.58 6.9631 2.13727
ATGAMCYY 5.12 3.25182 2.06295
AGAKMARG 9.86 7.21533 2.04208
RGGTKGKM 12.44 9.47459 2.01776
CTCRCCCN 9.44 6.85735 2.00575

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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