Task #3637 - b9f65fa8 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 8 minutes (490sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) CSCCRCCS 9.78 3.39661 82.8078 TCACSYSA 13.3 5.82506 74.887 TYRTTDWY 9.32 3.48211 68.5108 CCRCCVCB 17.34 9.52789 55.4883 AVGGHMAR 26.4 16.9937 52.437 GCGWGCGN 5.92 1.926 51.4621 GGGKYGGG 6.82 2.43731 51.4467 CGCBYBCG 8.64 3.63311 48.754 RGDCAAVG 14.64 7.97497 45.8375 GGYGGSGH 12.9 6.70115 45.5103 ACRTACAC 5.66 1.98276 42.6127 GRCMAMGN 18.66 11.3288 41.8606 AAYRAMND 16.26 9.50259 40.6106 WHRAYRAM 15.1 8.64548 39.8315 WGCGHGCG 4.84 1.58945 39.6316 TGTAYGTG 6.68 2.76075 36.8249 NAAYAAVN 18.78 11.7753 36.5165 GVVCKTKG 24.1 16.2907 35.5953 ATACRVAC 6.8 2.89093 35.1624 GGCBAGCK 8.34 3.92314 34.9336 ACWCRTAC 6.12 2.50424 33.7136 CGTGCGYR 3.6 1.05166 33.5451 ARARCKRR 16.96 10.6076 31.9489 TDRMYTTK 19.12 12.4023 31.6226 CGDGRHCG 5.38 2.17075 29.4803 RASNTGGM 28.1 20.3388 29.2277 CGCBCCGV 5.08 2.00002 28.9827 GRBGAMRR 29.26 21.4175 28.7756 MTTGKYYN 28.04 20.4841 27.183 RTCACSYS 17.0 11.057 26.161 AGCTCTMC 5.46 2.33405 25.9449 RGGYAGRG 16.64 10.8635 24.7964 GCYSGCCS 9.54 5.3315 23.1917 TTVTTSBY 12.58 7.68685 23.1647 GRGDCRGR 25.96 19.1017 22.5073 CGKHGCGV 5.22 2.31663 21.9296 ACADACAW 6.1 2.91856 21.6609 AABNGVAA 13.36 8.45222 21.1379 CTCCDCCS 10.08 5.96657 19.3984 RRCAAGVB 23.9 17.6296 19.061 CTCWCCKG 10.82 6.57533 18.9361 GCGRCGRB 4.34 1.85331 18.8004 ACATGCAC 6.56 3.38127 18.4657 GVHAATSR 13.64 8.89154 18.3251 MVVTCACS 26.12 19.7364 17.9632 CGRDCGRB 6.0 3.019 17.6878 SVTCACCB 20.52 14.8162 17.4667 AGDWBRAA 14.52 9.6915 17.4286 TYRGRMRA 13.36 8.82816 16.2225 TDGCCCHG 12.92 8.48386 15.9909 AAWNAGAA 3.44 1.38104 15.8194 GGGCNAGC 7.18 3.97437 15.6993 GATTSGHY 4.1 1.80771 15.6138 GANAACWK 9.24 5.56301 15.4671 AABTHMRA 6.66 3.61247 15.2655 AKHGRYAR 21.48 15.9201 15.0116 TWTRWWTG 4.62 2.18483 14.8079 CGRCGDCS 2.86 1.068 14.4826 TTBRVTWW 11.38 7.37797 14.0156 CGDBTNCG 7.08 3.99476 13.9864 GRMTHBGG 17.54 12.5792 13.9455 AGRGTDGR 11.56 7.54896 13.7123 ARKMRARC 17.06 12.1966 13.6193 CCKMSTCS 11.08 7.17742 13.4515 GGTKGHMR 16.54 11.7765 13.3318 ACKTGAMY 4.24 1.99428 13.125 ATDCRTAC 3.16 1.29757 12.8799 AGAHAAVH 9.4 5.87995 12.6835 GACRGWVR 14.38 10.0334 12.2349 RRWMRATR 14.78 10.417 11.7933 GTKCGYGC 4.4 2.16458 11.6655 TNACBTRG 11.96 8.08 11.3047 GCGGSGCY 4.04 1.94189 11.0605 GCCMMSGH 18.8 14.0132 10.8751 TGTKCGTG 4.72 2.42699 10.8393 CSAATCRV 4.04 1.96383 10.5367 ACGCABAC 4.88 2.55783 10.5 ACACGCAC 3.66 1.72019 10.1518 TTTMRAAA 1.26 0.310245 9.59009 CGCYRCGV 4.8 2.5501 9.49278 ARGSCRGR 19.36 14.6767 9.46854 RCGGNCGR 3.98 1.97639 9.28371 GGYRGAGV 17.9 13.4028 9.2792 ATWTAVAH 4.04 2.01886 9.27116 TCGCCATW 1.2 0.289021 9.16599 AAMTCRHT 3.06 1.35882 9.15247 TTGKYTNS 14.22 10.2368 8.82113 GGHWGSGG 13.4 9.54404 8.69856 TTSAHSTC 5.98 3.49716 8.30118 CGGKHCGD 3.2 1.48511 8.25566 AYARTRGA 5.32 3.01081 8.06733 RAAGBCRK 16.0 11.8713 8.05318 TCARRGYC 8.56 5.56387 7.9209 GGWCRGSK 13.3 9.5467 7.84173 ATRTTKAY 2.54 1.06976 7.81525 CCAYSTYK 12.74 9.07741 7.73069 CATWVWCR 13.04 9.34775 7.60601 GTHSKTRG 8.28 5.37933 7.38485 TACRVACA 8.2 5.32003 7.31455 WRRCGRCG 3.6 1.8003 7.27425 DCGKKACG 2.56 1.10304 7.20253 AMTMRYTM 6.82 4.22606 7.16478 KCGCCVCG 2.94 1.35751 7.05662 GGGGYYVG 10.06 6.88256 6.9659 TGCGCDTG 3.96 2.07059 6.94976 GRGWWMGR 11.08 7.75695 6.79678 CGMASCGV 3.7 1.89499 6.74468 ACTTKGDA 3.52 1.77449 6.60344 TACRTAYA 1.8 0.655832 6.53565 TATGWGYG 6.8 4.26479 6.40844 GVRASAAM 11.0 7.73591 6.32278 TNGKCAAV 9.58 6.54641 6.26005 RCCACCAM 6.26 3.84868 6.25828 WTADTTMR 2.54 1.12893 6.09518 TWKTTBWA 3.3 1.64418 6.07645 GVCSTCGG 3.48 1.7722 6.04003 GMTVGCTY 9.44 6.4699 5.82153 GAKAKCTR 7.22 4.64782 5.7918 ACTGAAAA 1.1 0.294409 5.79046 TCHMSTTY 11.74 8.42462 5.76612 VGACRGAV 9.96 6.91223 5.75599 TCCTHVCC 11.24 8.00671 5.66823 AGCSAGBC 8.56 5.76735 5.49859 AACWAAVC 2.0 0.812805 5.24772 TGGMWARK 10.3 7.26148 5.12674 RRAHGAAK 8.66 5.88863 5.07083 TGTATATR 1.66 0.612849 5.05409 TTDTTCAG 1.72 0.650886 4.95911 WTDRWAAY 6.92 4.47235 4.94685 CAGGCAAR 3.88 2.11484 4.94572 GGCKYGGC 4.3 2.43292 4.82671 TGAAWAWC 1.6 0.590629 4.56396 WVTCACCH 18.74 14.769 4.54753 RGGCTVSG 12.28 9.02863 4.51666 RAHAAKTH 5.04 3.01579 4.51314 AATWTGGC 1.3 0.42534 4.35796 CGKYCGCS 2.28 1.02348 4.30963 CGDCADCG 2.38 1.08994 4.29928 ACARACAS 7.86 5.30568 4.17799 GAKRGYGG 8.46 5.80928 4.12463 ANTCAGGW 7.8 5.26591 4.06767 AAAATCAY 1.28 0.421144 4.05313 GGYASGGH 11.94 8.79468 3.98185 TATSCRTG 3.78 2.09819 3.89651 WSTTVTCC 7.82 5.30343 3.83467 WRCCMMGG 14.7 11.2431 3.8116 CTGCCCMK 10.36 7.45735 3.73789 ACGCATGC 1.92 0.813946 3.6436 TCACCWVC 9.58 6.80707 3.58515 AYCGDAMG 2.0 0.871672 3.45344 YACCACCR 4.84 2.93332 3.42429 GRMCCYGG 8.86 6.21525 3.40148 TNRGGTDG 14.3 10.943 3.38955 CGYCGGSB 3.6 1.99799 3.29996 TGAHAAMD 6.2 4.02231 3.299 AAMTTTAV 1.22 0.407126 3.20681 WWAATGAK 2.34 1.11159 3.06504 TYGCBNTC 10.2 7.39687 3.03344 AGCSAATD 2.74 1.38989 3.02558 TRGGYRGS 17.1 13.507 3.01474 CGGMYCGV 2.88 1.48957 3.01302 GGYGGGSG 4.16 2.43629 3.0095 ASAWATAM 2.5 1.22544 2.96119 AMGCSCCG 1.82 0.773128 2.95862 GCGCKYGC 3.22 1.74048 2.89598 TTSWYCTG 8.04 5.58675 2.77237 ADYTCKTC 5.0 3.11129 2.67306 TSRAYATY 4.76 2.935 2.49708 TTWTCTTB 2.26 1.08208 2.45795 RAYGGGGH 6.92 4.68579 2.42524 AAAWGARA 1.94 0.86949 2.41983 WCGRCGKH 3.16 1.7268 2.32676 TAANTAAK 1.08 0.350469 2.30174 CKTKGDAV 13.44 10.3307 2.24801 MTTRTTRD 4.28 2.57823 2.24145 CCRCCSAS 8.14 5.73152 2.16374 RYCACSAG 9.58 6.9631 2.13727 ATGAMCYY 5.12 3.25182 2.06295 AGAKMARG 9.86 7.21533 2.04208 RGGTKGKM 12.44 9.47459 2.01776 CTCRCCCN 9.44 6.85735 2.00575 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete