Task #3346 - 068687bd Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 2 hours (7950sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) GGGYGGGG 27.9683 8.92098 768.624 GGGGYGGG 26.4852 8.92098 666.176 GGCGKGGC 24.7746 9.37675 511.072 RGGGGYGG 27.9936 13.0788 391.763 RCCAATCR 5.94084 1.16844 250.29 RRCCAATS 10.2132 3.43553 229.076 WRGGGGYG 22.1117 11.5973 219.487 GCGKGGCY 22.8617 12.3015 212.496 ATTSGYTN 8.69638 2.81463 204.147 CCAATCRN 7.61776 2.41655 182.275 GCVTGCGY 12.9435 5.7137 179.87 GGGHSGAG 24.2016 14.2278 172.019 AAWSVVAA 18.3787 9.77051 169.016 ACTTCCGK 5.67119 1.54808 163.77 AABATGGC 5.233 1.34004 163.034 CGGGGCSK 21.8252 12.5571 162.711 GGGGNCGG 20.5359 11.6052 160.174 WGGGYGKG 25.3476 15.4593 159.709 TBBSWTTS 31.9542 21.5765 141.246 MGGAAGTR 8.58684 3.41787 140.812 GGCSGWGC 16.7439 9.18283 137.677 GMGGGGCG 17.0388 9.45952 135.264 GGGAGGGR 13.8788 7.11598 134.577 CRTGCGYR 7.95483 3.11261 133.73 TCSDYCYC 33.3951 23.0904 133.582 AAWWMRAA 8.46886 3.55072 124.754 TYHVKGTY 31.9963 22.2783 121.106 CGCANGCG 9.51378 4.29241 120.875 RGGSAGGG 18.7326 11.1436 119.804 RSCGWRCG 15.5979 8.72869 118.586 GKRHSTGG 32.4176 22.7704 117.693 AHMSRAAS 21.7325 13.7047 114.829 GWKSGCRK 38.5354 28.4585 113.388 TGAYGTMA 3.59821 0.903083 111.535 GGGGCGTG 5.69647 2.02343 110.379 ACGTSAYY 6.16837 2.30509 110.018 CGGSGDCG 20.8309 13.3505 101.491 GGMKDCGG 31.1283 22.3253 98.5662 RTGACGTM 3.69933 1.04412 98.3485 DGTKHGTN 26.342 18.3938 90.8236 SCGARCGV 15.0417 9.04737 87.7835 GTGHGTVH 15.1344 9.12152 87.7555 WRRCHACR 23.6201 16.1656 87.2805 WTAVMHAW 12.5895 7.19527 85.4324 CCATCTTN 5.24143 2.03606 85.1367 GGHAVSGR 36.631 27.9155 84.3344 DGCCTKGV 29.0554 21.0543 83.8373 ATGGCKRC 7.17957 3.30298 83.7438 CGYYAYCK 13.1794 7.69321 83.6846 TTKMWWTW 9.57276 5.00547 82.4508 WTTMRAAH 7.23856 3.37543 81.7277 ACDMACHN 26.224 18.7577 78.525 TKHGTMAY 8.40988 4.27932 76.7912 CGARCGMV 10.3312 5.71358 75.5104 RCCAATRR 6.88464 3.25014 74.743 WCCCCRCC 14.9912 9.40532 73.5564 AGGCBKDG 32.0553 24.2185 73.1053 GCGKWGCB 21.9601 15.2789 72.3718 AAYNAYAD 12.0334 7.0961 72.1514 GCGRCGGC 13.7524 8.4801 71.1304 GAGBYDGG 34.2209 26.3836 69.3094 GTCACGTG 2.16567 0.509498 68.9478 GWGCGMGC 9.9941 5.62181 68.4786 GTYRCTDN 20.418 14.1364 67.4824 CGGMWNCG 20.0388 13.8157 67.3769 TMCVGHYC 31.3643 23.8798 66.7784 TAWDMAWA 5.6122 2.53408 66.0115 GGWGGGGS 18.5894 12.7485 62.8144 HGTCVSTN 31.4738 24.267 60.8208 WTRNWTAS 9.15143 5.17918 60.2672 ASBGAYDV 35.7125 28.2442 59.8521 TSSBTDCK 36.1507 28.7565 57.9296 RGWGSGMG 35.2322 27.9461 57.002 AWGSVMAR 27.5975 20.9399 56.5725 ATTGGHCR 4.49145 1.96109 55.2139 TGNCTVWG 20.7466 14.9578 54.0017 GGGHTBSG 28.1031 21.5266 53.9583 ABHMRGAW 28.1621 21.588 53.8014 GKAAGTGH 6.8088 3.63785 51.3681 GRCTYKGN 34.7434 27.8043 51.2313 CCTCCCYB 22.9965 17.1619 49.1313 ATTYNDTW 9.3621 5.63199 48.9383 GSTTCCGK 7.39024 4.14264 48.0634 TDDSSWTG 23.974 18.1208 47.3682 TBAYKCAW 6.32005 3.36892 47.2734 CGRMYCGG 12.6991 8.38802 46.6796 WRSSMAGG 32.3923 25.892 46.1928 TTGSYTGN 12.4631 8.21461 46.0646 WHBSTAAS 13.3901 9.01913 45.049 STVGGTNB 34.8277 28.2547 44.8012 MAGYHCCR 29.8559 23.6463 44.2667 CCAATRRR 6.70768 3.7306 43.872 WWYRAATV 7.61776 4.43648 43.1462 CATCTTDV 5.22457 2.66897 42.9704 GCTHYGDK 27.9346 22.042 41.2848 WAHKBTAW 8.97447 5.55293 41.0244 CTTMCGGS 8.35089 5.07544 40.5372 GCAVGCGC 8.78065 5.43555 39.8042 WTYKAWAB 8.73852 5.42316 39.099 TYDSTMTS 20.5359 15.4965 38.2795 ACCWYARA 5.22457 2.76671 38.1774 ACGCCCCY 5.17401 2.73273 38.0543 TTRTTTTK 3.39597 1.50525 37.9391 GRMSGARG 30.4963 24.6132 37.9036 CGHSTCCB 27.2858 21.6769 37.2386 AGMSWNAG 23.7297 18.4246 37.2351 GTCCCGCC 5.66276 3.11481 36.9354 ASTGCGCA 2.64599 1.04444 36.9155 GTCYCYRN 28.4402 22.8104 36.1173 TGARTKHN 15.9265 11.5672 35.5513 TGCGCGYK 6.57285 3.84251 35.2084 TTBVSWTM 18.8843 14.1898 35.0447 RHTKCCTD 23.7044 18.5398 34.7498 GCCTKGSH 22.2129 17.2114 34.3047 AWGHAAAY 5.03918 2.72093 34.0521 GCBAYCGH 11.6542 7.98411 33.9112 GCWDCGGC 13.4406 9.51136 33.56 AAGAVHDA 11.5109 7.89549 33.0974 CGVTCSSG 16.4574 12.1876 32.2067 AAMWHAAS 9.9941 6.68488 31.7024 RGGWAVGG 14.4518 10.4671 31.6056 GTRGYTWN 13.8367 9.99139 30.3634 GRWGCYGD 29.839 24.5173 29.7879 WTTMKYAW 5.64591 3.28886 29.2847 GCCCCYTN 17.1652 12.9641 29.1759 RGMCWCKG 22.946 18.1789 29.0757 ARRSMRGA 33.2013 27.7486 28.9016 ACTACRWH 2.81453 1.26494 28.7724 TRWKTAYN 9.69074 6.58002 27.7659 TTYVAGWW 8.48572 5.59777 27.4319 GNAMGSAK 21.7662 17.2032 27.3996 CGGWKCGV 13.2215 9.60562 27.1714 TWCAWYTH 6.53914 4.04177 27.1479 DGTRGGTR 7.97169 5.21356 26.4232 AVKCADAG 10.8873 7.64852 26.1926 AACVAARA 3.38755 1.69939 26.1761 GCGYRCGG 9.97725 6.88222 26.1575 AGCGCRCG 4.55886 2.55267 25.9381 ACGTYACR 2.02242 0.801719 25.8827 GGGYCGGG 8.42673 5.6285 25.2316 DGDRYCTG 32.0806 26.9942 24.6647 GGSCGGGC 15.4209 11.6556 24.6518 CRCYATGK 6.22735 3.87583 24.4985 KASCHNAG 30.3109 25.3438 24.3362 GGWTNGRD 21.5809 17.2487 23.9248 CSAGGCYR 15.6316 11.8818 23.9105 MTGCCTDB 15.7243 11.9655 23.8841 ADHYGTAG 5.34255 3.20273 23.838 AGGYWCYG 9.68231 6.73668 23.6319 GGTYKCND 28.8194 24.0272 23.124 GKCTRDGK 24.2774 19.8 22.9091 GYTSRKTS 19.6174 15.5525 22.4062 AGRKGGCA 5.79759 3.60923 22.1117 WKCSHAGM 30.4963 25.6951 21.9908 ABWTDCHA 12.6991 9.4185 21.6278 TCRAAYHH 7.57563 5.06273 21.5719 CACSGYCS 11.5868 8.45518 21.5575 GVGACCSG 9.81714 6.96797 20.8737 TCDCSATV 6.89306 4.52999 20.8554 KTKSCCAG 10.6345 7.71113 19.9154 TRGAKWHR 14.7805 11.3506 19.826 AHSSTKAG 10.0952 7.25988 19.6578 GRCGCRCG 10.0447 7.24452 19.0494 GGMTCCGR 7.77787 5.34065 18.6956 GVGTMHCG 12.3789 9.29233 18.6252 TTCAGHAC 2.36791 1.14051 18.2204 AMTVARSW 16.6849 13.1635 18.0789 AAGMVGAA 5.47737 3.48952 17.8501 TYARKTTH 6.99419 4.73075 17.6527 RCYATGKM 8.24977 5.78887 17.43 WCAKTWCY 7.62619 5.2899 16.8234 AAWBBWTA 5.51951 3.55923 16.7677 WSCKWCCK 20.9067 17.1161 16.7087 AAHSTCAA 2.38476 1.18085 16.6406 AYTVGRTN 9.94354 7.28003 16.4684 TGTAKTTC 1.33142 0.499682 16.4494 GGGGYWBG 17.4602 13.9729 16.434 GRMGGTGR 13.7946 10.6757 16.2895 TAMATAHB 2.71341 1.41951 16.284 AANKAYKA 5.82287 3.825 16.1754 TGGCGDCG 7.41552 5.14606 16.0323 CGTYACGD 2.38476 1.19384 15.9528 TGVGAAHK 9.38738 6.83396 15.773 ADCCAATA 1.39041 0.543581 15.7286 TCACGTGR 2.22466 1.08833 15.6591 ACCYASWG 6.67397 4.54678 15.5627 AGMGSWAG 8.61212 6.18192 15.5011 TTMYKGKA 8.70481 6.26424 15.4337 GCGSKACS 9.88455 7.28136 15.4072 ACWGRRAW 9.75815 7.18058 15.2322 WKCAAABW 8.15707 5.81026 15.1473 TTKWWTTC 4.28078 2.63564 14.8706 GGCGRCCG 8.7638 6.34768 14.7309 TTSKCTMY 9.78343 7.23416 14.6017 TKCNTDCC 15.463 12.2808 14.5915 GYWCGGCK 9.33682 6.87029 14.1391 TGGAYAGH 4.02798 2.46026 14.1246 AGHWMCRG 17.7383 14.3981 13.9396 GTRNCTGH 15.3956 12.2633 13.9269 CAGSYANG 15.1765 12.0664 13.9038 TRYTTTGW 3.52237 2.07701 13.8686 GTCRYCGH 7.85371 5.62332 13.5758 CGRGMCGR 12.7328 9.89003 13.5706 DGRCAGYR 25.5667 21.7338 13.3476 CGARCGGB 6.48858 4.49357 13.0535 DCGMAGCS 14.4687 11.4831 13.0345 TCCSCTYC 9.58962 7.14957 12.9701 AGAMMHWA 8.82279 6.48547 12.9411 GYCTCRGY 11.8648 9.15995 12.8485 DGMCAKGG 15.4968 12.4417 12.6409 CGASKRCG 7.71888 5.55183 12.6334 WNGBTAGR 13.6429 10.7786 12.4095 TTANNGAW 5.56164 3.75245 12.347 ACCHCARS 11.907 9.22867 12.3249 GRACSCKR 14.9406 11.9586 12.314 ACSGYCBC 13.4069 10.5844 12.1268 AHDCATWC 3.33698 1.98426 12.0685 AWAKWWCA 4.0364 2.53118 12.0142 WHGGYCAC 8.10651 5.92093 11.863 GGWSGAGC 9.82557 7.41727 11.8229 TAMKRWAS 5.16559 3.44825 11.7922 GACCCCGM 4.10382 2.59425 11.7113 TGTSMATH 3.80888 2.36767 11.5032 ATTGGTCY 1.45782 0.648001 11.2099 GWYCYRGG 17.8057 14.6804 10.9585 WCCSACCC 5.55321 3.80042 10.9464 GCRRCGCG 12.2356 9.61537 10.8232 GKBCTKWG 22.828 19.3803 10.7256 RACTMAGD 5.53636 3.80648 10.4496 GTYMGTNH 11.8817 9.32441 10.4094 GGCASGGY 7.26384 5.27209 10.3204 TGAGTMAG 1.5758 0.742576 10.1957 MTNGCTTB 12.6991 10.0767 10.1379 TCMABCYW 14.2412 11.4789 10.06 TRARRYYA 10.3312 7.97248 9.91361 TGRTRACG 2.03084 1.07286 9.51604 TAGGTKGC 1.47468 0.691717 9.18286 TYWSKGTR 13.0614 10.4732 9.12362 TYGYWGTC 3.99427 2.59427 9.08644 AWGHATDT 3.61507 2.29165 9.06316 AGTCTNWR 7.12901 5.21792 9.06069 RACTTCCG 3.06733 1.86232 9.03151 TGGGKYGG 8.511 6.42376 8.94685 GWTSGMTD 7.05317 5.15874 8.93846 AAASTRAA 2.03084 1.08942 8.75077 RGTCCCVG 10.4154 8.12219 8.68905 CATGKYGG 4.74425 3.22532 8.57063 TKSGCAAS 4.23864 2.8168 8.40259 CGGCCRCG 7.4071 5.49291 8.37482 TKCSWMTC 8.05595 6.05743 8.37329 GTGTGGYY 5.40153 3.7834 8.31107 CTKGRATD 5.78074 4.11323 8.08206 WAYKATTB 3.45496 2.19644 8.07957 ARRVWATG 8.64582 6.59303 8.04338 WNCKTTGC 5.97455 4.27965 8.03776 GGCCRMCG 10.4997 8.24856 7.88344 GMGKCCGG 12.3283 9.89559 7.88182 TCTCGCGA 1.1039 0.470756 7.77234 GGHCSGGG 16.1709 13.4242 7.74534 SACYGTRS 8.83121 6.7749 7.72612 GAYGYHAK 8.35932 6.35983 7.71679 AGKWBGAG 10.6935 8.43991 7.61172 THGGTWTW 2.76397 1.66886 7.59758 AGADMDAC 7.76944 5.85401 7.51993 ATCRCRWD 4.36505 2.95477 7.49654 GSGCRAGS 15.7664 13.0739 7.45774 TWTMAAAG 1.88759 1.01561 7.39026 TCWGRATB 5.41839 3.84389 7.26054 ARVATVCA 6.35375 4.64321 7.2127 CRAYATGG 1.955 1.07417 6.97603 DTGMCAGK 7.35653 5.5275 6.90231 GRGGTGHG 9.38738 7.32459 6.79918 GMGCTKCG 7.27227 5.47314 6.55347 ASGRARMG 14.7299 12.1965 6.4847 WCTCMAVC 10.0194 7.91194 6.45041 TCGWTSGW 1.31457 0.631341 6.40585 GGRGACMG 7.20485 5.42446 6.36931 CAGCYYWG 14.4855 11.9815 6.35948 SCTHTGCN 23.7802 20.694 6.32346 CACCTCCB 6.85093 5.12812 6.14885 GCDMGGGG 14.3254 11.8537 6.11691 ATTCMYAD 3.71619 2.48327 5.91083 KTGGWCAK 5.42681 3.91973 5.78007 TTTRMASW 6.26949 4.64728 5.70656 WGCTADGN 9.4885 7.48621 5.69536 TBCTATTG 1.4494 0.738136 5.68391 AAKTVGDT 3.95214 2.68872 5.60778 GAYTSGAY 2.57015 1.57799 5.56633 TCDSRCTC 10.7525 8.63448 5.54419 TCCAATCR 1.07862 0.488196 5.51562 CCACTAGR 2.26679 1.34917 5.36522 CGYMCCGK 10.8536 8.74408 5.29271 AAWTWAGA 1.323 0.658076 5.25672 TRCAGRYA 3.72461 2.5186 5.16843 ATGWWDTM 4.23022 2.93793 5.15626 TGDKTCTH 8.7638 6.87369 5.1558 KMACTVRG 13.8367 11.4852 5.11639 ACGCAMGR 1.80332 1.0064 5.10816 GGACRCGC 3.84259 2.62055 5.04862 TGHKRCTG 12.9013 10.6324 5.02379 ATTAYNKT 2.09826 1.23015 5.01201 GGTGTGGY 3.60664 2.42996 4.9557 TMACCSTD 4.17966 2.91229 4.76605 TAGSTWTS 1.84545 1.05075 4.57709 RSCTKGAD 22.0106 19.201 4.50918 CYTSCCAS 15.6737 13.2414 4.48755 GCCCCKCG 8.78908 6.94129 4.47178 ADGTYWCW 9.27783 7.39028 4.31958 AAACCTCA 1.00278 0.458014 4.26848 GGTGGCVG 8.99975 7.14661 4.22871 WCAACRAM 2.01399 1.18863 4.17341 ACGMGCGM 3.7836 2.60758 4.16535 TCTWNCTC 6.11781 4.59896 4.1553 TSCCAGSW 10.6767 8.67455 4.06054 GAGMRAGG 7.05317 5.42712 4.0143 ACCCMCAM 3.8763 2.6953 3.91307 WYTCTGAD 7.05317 5.43436 3.89461 CGARCMCG 4.18808 2.95984 3.83897 TAADVACA 2.74711 1.77469 3.7964 GATTSGTR 1.18817 0.592796 3.75701 TAGMAWTN 3.10946 2.0724 3.66415 ACGGCGGC 2.76397 1.79351 3.64273 DGTAASTR 2.95778 1.95356 3.54222 WAGTKHAW 4.66841 3.38668 3.41977 ACYGTDSW 7.39867 5.77094 3.40247 GGNTCGCK 8.0391 6.34244 3.39201 GYASGAAG 4.20494 2.99482 3.38022 CRCTASGG 2.78925 1.825 3.32548 GCARYMGC 14.2412 12.0146 3.32331 CAGGCTKN 12.9519 10.8217 3.30695 GACGRCGR 3.89315 2.73593 3.29856 TYKATDCW 4.1291 2.93763 3.22975 GKAAKTHG 5.08974 3.7578 3.22724 TGASVTAB 4.36505 3.13788 3.22111 RTCRTYWY 7.11216 5.5361 3.09508 GCWTGCWY 4.7274 3.45451 3.0677 ACRAMTHM 5.37625 4.01569 3.03507 GCACCRTG 1.71905 0.997427 2.94772 TATHGDTM 1.67692 0.965756 2.94399 TTGVATGC 1.21345 0.626693 2.93315 GGRKWCGC 7.82001 6.17748 2.93036 CAKGCCAS 5.73018 4.32954 2.9277 RTAMKDTH 6.79194 5.26458 2.90027 TVGCCCCG 6.28634 4.81903 2.89062 GGCMKCGC 12.2609 10.221 2.87773 ATCTTRSM 2.68813 1.75935 2.87672 AYKGCAAC 1.49996 0.836927 2.81523 TCRTTWKC 2.35106 1.49283 2.77971 AGTGKHYA 5.40153 4.05327 2.74858 ACDTGRCA 2.87351 1.91514 2.72729 CCTTTAAK 1.27244 0.674165 2.67484 TAARCAAK 1.20502 0.626307 2.65935 WNCGRTCG 3.55608 2.48241 2.6379 AGGTAMGH 1.63479 0.942726 2.60671 TGCCCYGC 5.27513 3.95139 2.60367 TTKCCWAN 6.18522 4.75119 2.53746 AGGTSWGG 4.91278 3.6421 2.52014 RCGCGCAG 5.07289 3.78132 2.50573 GCCTYYGH 17.6877 15.3252 2.46629 TTRVRAAS 9.03345 7.3067 2.41424 KGGCACBG 6.62341 5.14668 2.40007 GAAGTRBR 8.0391 6.41071 2.39539 RGWMGATG 3.42125 2.38129 2.37053 CGKSCGGG 13.9715 11.8518 2.36953 AGCGGCVG 10.3817 8.53925 2.34859 GSATHCWK 9.27783 7.53819 2.28419 TAHATABA 1.17132 0.610178 2.27852 WTTCAWSW 4.01112 2.88231 2.27101 GTGGGGHK 10.7357 8.88784 2.05195 WKTATDTG 2.74711 1.83807 2.03571 TGGHTDCC 8.3846 6.74801 2.03265 AMCGGAWA 1.49153 0.850572 2.00277 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 0 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete