Task #3641 - 130d5634 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 10 minutes (612sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) GGGRMTTY 23.34 8.7846 198.163 GGRMTTYC 22.22 9.21958 155.661 AAKYCCCH 25.54 12.2603 133.909 GGGYGKGG 11.84 3.68857 122.753 CGCABGCG 5.1 0.677269 121.842 GGAAAKYC 14.18 5.70063 97.1855 GCVTKCGY 8.1 2.50367 80.6734 TGAMTCAB 10.6 3.94079 80.4268 TGTGGTTW 7.46 2.28079 74.6468 TGAKTCAB 10.64 4.1336 74.2028 GGCGGRGC 6.12 1.63684 72.2546 AANHGAAA 21.9 12.3964 68.0334 GGGKHGGG 11.14 4.75045 64.3061 CGKNSGCG 8.68 3.23373 63.3366 AACCMCAD 12.32 5.56941 63.3007 GTRSTTWS 15.6 8.16526 56.692 CGGDKCGN 8.42 3.32987 54.1268 CGMHCCGB 7.64 2.87115 53.4681 WAWNCRAW 29.36 19.4562 53.1915 AWNCRAAB 24.42 15.6196 48.3039 KGCGNDCG 8.76 3.76878 46.9834 ACCAYARM 11.3 5.49191 46.9591 GCGNDCGR 8.1 3.35305 46.6883 CGGAAGYG 3.76 0.914686 46.5299 AAAMAAAA 10.34 4.86158 46.0442 WRGGGAMW 26.82 17.822 45.8503 GGVGRCSG 10.86 5.23595 45.6859 DTCCCCWN 32.12 22.6773 42.9102 ANCVAAKV 37.34 27.6647 39.88 CGDDCGGV 7.68 3.34589 38.6275 TBGYTHDG 34.78 25.4758 38.3245 CTCSRHCS 11.82 6.26496 38.0098 TRSTTWSH 36.9 27.4658 37.7439 AVYGAAAS 12.88 7.14896 36.1748 ACTTCCKB 11.86 6.39235 36.0276 CGMKDCGS 8.08 3.70746 35.9545 GCGDCSGS 7.48 3.35812 34.5278 TRSMAASW 30.8 22.2694 34.2731 CGRHSMCG 7.44 3.39481 32.7978 GGGABSGR 11.86 6.60492 31.938 WTNGMWAY 29.7 21.5073 31.9234 GCASGYGC 6.16 2.59561 31.6356 TTCANTTY 13.42 7.81712 31.6276 ASGAASKR 13.52 7.91556 31.2778 TCRSTTHC 11.98 6.77169 30.5528 ASSSABVG 36.94 28.2933 29.9909 CGHMKCGV 9.3 4.8193 29.796 AAABYACC 9.22 4.77432 29.523 DGCSTBSG 21.88 14.9109 29.2722 AWTMRDTA 11.98 6.87584 28.7104 ATARWTMA 7.44 3.56139 28.5101 GAKTCRHH 16.56 10.599 27.4529 WMCCYARV 37.04 28.6828 27.2901 CBTSGCWN 32.06 24.1456 26.8294 RSMSGAAG 17.88 11.7482 26.6635 AAAAYCMM 14.92 9.3522 26.2266 AYNYGATM 11.44 6.63295 25.7523 GTCACRTG 3.6 1.23951 24.6436 TAAAWMWA 11.24 6.563 24.335 GGCBCCGC 5.1 2.16095 24.1981 GAGDYVGR 25.08 18.1521 24.1869 GACTCABN 12.46 7.59239 23.1544 GGWGGGGN 13.38 8.36277 22.6239 GBCTKDGK 35.34 27.7129 22.0064 TTRCWYAW 13.68 8.65411 21.9289 GRWTTCMM 18.44 12.634 21.6089 GCYWMSGK 15.96 10.5979 21.0029 GMHCTKNG 35.12 27.64 20.9175 WAMGRWMR 29.56 22.5321 20.7822 AWMWAAAY 19.5 13.6134 20.7818 TGCRCVTG 6.96 3.55962 20.7712 AADTACCH 8.88 5.00526 20.1095 WGGGYRKG 18.66 12.9699 19.9402 RDTKACAK 22.1 15.9592 19.8555 ASWAMBRA 29.06 22.1908 19.7856 TAWBTAHM 17.96 12.3955 19.6814 GVAKMSAR 34.76 27.4821 19.4813 CGGCBCGS 4.8 2.15027 18.8715 CKTKCCHD 31.02 24.1381 18.4925 GDSGGWGG 14.72 9.77369 18.4519 ATRMAAYM 13.48 8.82062 17.5528 CACSTRCB 9.18 5.43603 16.7204 CGMGRKCG 3.22 1.24362 15.919 GTMAYYHR 28.5 22.1492 15.8517 GRNCGYCG 5.52 2.77846 15.5108 CWAHSRAN 36.16 29.3561 15.239 TYBATWGY 13.46 9.01979 14.91 GGAHSBGG 15.32 10.6011 14.7098 CGSGCCGS 3.96 1.76269 14.3094 MDYACCTR 18.18 13.1029 14.2582 GAAAMCCM 9.02 5.49503 13.8903 AAGAHMRA 12.92 8.65716 13.8858 AABWBGAW 22.96 17.3799 13.7746 ARABMSRA 33.06 26.6583 13.6843 AGDAKSNA 31.9 25.6185 13.3655 GWCGNDCG 3.96 1.81128 12.9937 ASGGKCGG 3.24 1.34931 12.8337 ASAGAHRS 26.32 20.5807 12.4973 AYKAYKTA 7.78 4.6353 12.2377 TTKBTTTC 14.6 10.2302 12.1354 DDCTANGR 27.86 22.0418 12.1351 CGRCSGKR 5.7 3.0715 12.1193 GGCRWSGC 6.1 3.37085 12.0353 GGAAAMCC 6.26 3.49725 11.9041 WTTTATDR 14.44 10.1168 11.8961 TGTSKKTG 10.34 6.70887 11.7382 GCYMVGWG 20.42 15.3547 11.6978 CSYTSGGS 12.64 8.65447 11.2431 WCSGMCSC 6.8 3.95252 11.0936 GAABGVAR 16.86 12.2904 11.0472 TTTCCADD 17.74 13.0912 10.7684 AAYMAAMA 11.38 7.64821 10.7206 TGACVWCA 7.14 4.24532 10.5903 GVWYGCTN 22.68 17.5283 10.5057 TMAMMTRA 14.32 10.1767 10.2422 TGASYAAB 10.16 6.68538 10.1984 HATAAAWB 17.98 13.37 10.1709 GTCSCTNV 13.98 9.90127 10.0833 MTRCSYAS 16.18 11.8284 9.83886 ASCRANCA 10.46 6.97817 9.64796 ANRTGACH 22.32 17.347 9.39119 WGDCMYTG 24.26 19.122 9.31878 RGGVAMGY 24.02 18.9128 9.24519 KWACWAWG 9.64 6.33824 9.23577 AAHTGMTA 5.14 2.81459 9.1873 CCMCRAAB 10.88 7.36775 9.17284 GKDCGGYS 8.62 5.51595 9.1548 CGKYWGCG 3.12 1.3987 9.13752 GCYCGVCS 7.36 4.51457 9.12279 ABTTAMNA 16.46 12.1548 9.10507 GAYGYMAY 8.36 5.31704 9.01987 TTAAAWWA 6.8 4.08804 8.95314 WAYCTKAD 15.68 11.5425 8.4786 YTRYGGTV 13.16 9.36863 8.40141 GCGRKSGC 4.96 2.75599 7.81876 ATAHWTAS 6.62 4.02752 7.75972 SCTMSGGS 10.26 6.97897 7.74165 CCGDDCGG 2.82 1.26007 7.53668 RCSTGGCH 13.68 9.91759 7.43758 KCGRAGGV 6.98 4.33636 7.39216 AAVTAWMA 12.06 8.53096 7.38902 TYCSDTCS 10.5 7.21332 7.37279 GNRGHTSG 27.3 22.2091 7.37207 TGCSHARG 9.98 6.77909 7.37025 GDWVGAGR 24.92 20.018 7.28561 TACVDTKV 17.7 13.4749 7.22431 AHDSTAWC 14.14 10.3519 7.1165 GWSGRCGG 5.14 2.93077 7.11541 AHKCAMYK 23.36 18.6145 7.07578 ACRBYTGM 17.34 13.1755 7.05592 GACMSRDR 28.14 23.0534 6.97981 DGGCYCCG 5.62 3.31268 6.84048 AAMCCCCA 4.04 2.14409 6.63014 CGKKACGB 2.9 1.35049 6.54812 RDGCTRDG 32.68 27.3988 6.54375 CGARCGHK 2.16 0.874861 6.45214 CWGCCYBG 17.88 13.763 6.23165 AGRYGKVG 17.44 13.389 6.081 GDCSGYGC 6.06 3.7186 5.871 WAWGCTAW 5.2 3.0601 5.73852 TGHAAYYB 27.46 22.6493 5.55086 GGAGVRCG 4.9 2.84613 5.49564 ACRMMYAC 8.96 6.11577 5.31782 GSRKCGTS 6.7 4.26826 5.29514 ATVAABTA 5.86 3.61023 5.17445 GCCATCTY 2.92 1.42735 5.00494 WCVVTGMC 21.14 16.8906 4.98155 TCCCCTWN 9.58 6.66774 4.97397 AYCTKWGW 13.26 9.83101 4.96218 WYVGAGWC 12.46 9.14454 4.871 CKKAGRDS 28.32 23.5715 4.86389 CKCGRAGG 3.16 1.61209 4.62195 TGGMKDCG 5.76 3.57344 4.58294 AAWBCMAS 23.12 18.8068 4.36769 CKHMCKGG 15.84 12.1897 4.33267 AARCWAKA 8.04 5.44994 4.23148 AGDWCARA 12.36 9.15216 4.05261 TDAAATAY 6.06 3.85775 3.96198 TTTTKAAW 7.74 5.22671 3.95102 AWMAASAA 11.16 8.12746 3.90553 ASTRCGCA 2.16 0.962988 3.81085 TTVGTMAY 6.54 4.26148 3.7441 ASWCARWG 16.4 12.7948 3.57602 TTGMDWCA 9.42 6.67957 3.50209 GGABHCGH 8.76 6.12961 3.41383 TAVATAHC 4.68 2.81279 3.36994 GGTKYGKB 16.22 12.6672 3.33265 TGSVTRYC 14.82 11.4147 3.32323 AVCKWMCK 15.34 11.882 3.30287 RGCCBKAG 9.58 6.847 3.20398 AGTTTCAH 5.02 3.08951 3.19894 YRAKMCAD 25.66 21.3697 3.18603 AWAVTAMA 11.3 8.33662 3.13648 TRTSGSTW 8.5 5.93883 3.12699 CAGASRCD 13.34 10.1286 3.10984 AAMAAAAG 5.62 3.57272 3.08853 TDCRAATR 5.84 3.7553 3.0076 AHTCRTAW 4.8 2.93099 3.00251 ACGHKCGV 3.26 1.76521 2.98073 TCDARTTR 6.28 4.12405 2.84781 TTCVAASD 12.48 9.40434 2.84153 CGAGKCCS 2.22 1.04207 2.77691 AMTKAGHW 17.18 13.6185 2.75153 GGAMGTWS 5.92 3.84319 2.71359 CNDAGCTR 17.14 13.5902 2.69859 ATTDCMYW 20.26 16.4411 2.69049 WCSGTCGH 1.46 0.55914 2.67338 CWRCGKCG 3.0 1.59543 2.61138 GGCWDCKG 12.4 9.37103 2.54748 AGCGSVCG 3.32 1.83538 2.49581 WWCTCARV 21.68 17.7879 2.47192 ATGGCKGC 2.9 1.53422 2.39431 GVCYTKGM 21.98 18.083 2.37139 WATGAWTD 7.96 5.5654 2.30563 GACABYTR 10.16 7.44498 2.30076 GGACWTTK 5.2 3.30848 2.15712 WGCTKNGG 19.02 15.3952 2.11945 GGGCMGGK 5.48 3.53672 2.10925 CGCTTKCG 1.04 0.334982 2.01449 CMCWRAGR 19.3 15.6707 2.0066 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete