Task #3633 - bb65f1d1 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 44 minutes (2655sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) NNNBNCWG 52.8054 29.4485 302.698 CWGNVNNN 50.0664 28.1469 271.291 DNNCWGNN 50.9794 29.0757 267.561 NNCWGNVN 49.6016 28.1469 259.97 NCWGNNNH 49.1202 27.813 257.654 DDBNCWKN 54.6647 32.9911 251.098 TSYYYHCH 10.4084 2.90905 150.947 WGGRRRVN 12.334 4.63207 115.101 CHHHCWSH 13.1972 5.25748 111.218 CYHCTBYH 7.63612 2.08999 110.122 DSWGRDDG 13.5292 5.72468 101.135 RARGNRVW 10.0598 3.79849 90.1377 DBNCTYYY 13.662 6.31081 83.6639 BYYYCCWY 6.3247 1.84361 81.5858 DGWRRRVH 16.9987 9.13232 71.8508 RRRARVWG 6.1587 1.9137 71.8156 DCHYYTKB 10.4084 4.96334 55.4644 CWSYTBYY 5.89309 2.10638 53.5604 ARDBVCWW 8.20053 3.79213 44.8883 DDDBCHCW 15.3718 9.1534 43.5837 NHCWHCCH 7.37052 3.38023 40.1569 RRAAVYVM 5.46149 2.17075 39.231 RWGGRRVS 5.77689 2.39194 38.2893 RGRHKDGG 5.17928 2.14389 33.3549 WVCWKBTN 10.9562 6.248 32.9951 VMMWTKSW 7.47012 3.74316 31.4648 DNCHCWCH 7.15471 3.558 30.45 DVDGTGDG 5.51129 2.49242 28.6641 MHMCAHHY 6.1587 2.96234 27.6852 WGKKTKBM 5.84329 2.75682 27.3747 RRRWRGNA 5.51129 2.59403 25.4656 GTGDKBHY 6.2085 3.19912 22.1662 KDGDDTGK 6.68991 3.57076 21.5781 RCAWDSWH 5.14608 2.47894 21.4734 DVAVCWDG 5.9761 3.10155 20.4187 CHYHCWWN 8.10093 4.80303 17.9685 CWTKKKNN 10.1926 6.51057 17.0696 WGRDNCHC 5.39509 2.86188 16.0076 KDSCMCYH 5.02988 2.71159 13.2815 KGDWKKWG 5.39509 2.99204 13.0268 DDMMWTGN 9.13015 5.99119 11.8028 CWSVTKDS 5.69389 3.33097 10.6888 NNHAVCTG 5.02988 2.83904 10.4711 ATKKKKKN 6.1753 3.73389 10.1052 CCWNDRDG 5.21248 3.01279 9.7353 KRWKGYHY 7.53652 4.85849 9.37568 RKGSAWDD 5.46149 3.34 7.21997 HTDKTVCH 5.77689 3.626 6.59038 VCWHCMYH 5.41169 3.34883 6.3993 KRGWRRRH 6.73971 4.48021 5.4236 DNCAWRSW 5.39509 3.40344 5.2839 CHHMARSH 5.16268 3.2724 4.42326 SHCWGNTB 5.14608 3.32528 3.40156 WRBAMHAB 5.21248 3.40534 3.00951 WGKRRDTH 5.47809 3.64765 2.63786 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 0 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 35 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 5 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 0 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete