Task #3351 - d070c755 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 9 minutes (557sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TGGAAAGA 60.19 0.368585 11736.0 AAGASNDN 45.91 29.8653 248.899 TCCAYNNB 45.17 29.8653 227.197 AAGAWNNB 44.95 29.8653 220.93 TCCARNHN 44.35 29.8653 204.27 TTTCNTTC 4.72 1.46624 102.273 AAGASNCN 16.93 11.1475 66.0272 TCCARNGN 16.61 11.1475 59.424 TCCAYNNA 16.45 11.1475 56.242 TCTNNTTC 9.55 5.73774 50.6312 AAGAWNNA 15.9 11.1475 45.9218 AGAVSMKN 34.91 29.8653 27.0121 AGAVAHBH 30.04 25.8654 20.4425 CCANRMWV 34.14 29.8653 19.8018 RSDWNTGG 33.9 29.8653 17.7855 AGASBKNS 33.7 29.8653 16.1894 CCAVRKWN 33.49 29.8653 14.596 AGANYMMH 33.35 29.8653 13.5808 TGNNNTTC 23.96 21.057 11.8874 CCADCDBV 28.83 25.8654 10.927 AGAMSKNW 23.69 21.057 9.98316 AGATRMNB 18.64 16.2481 9.97845 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 8 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 0 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 0 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 0 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete