Task #3389 - 607c75ca Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 16 minutes (999sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) RCSAATSR 50.2358 10.84 1230.78 RRCSAATV 55.288 14.7678 1130.82 ATTSGHYV 58.2351 16.8742 1111.44 CSAATSRV 56.7363 17.5675 988.573 DRGGYGGG 52.8966 20.9548 626.761 RGGYGGGR 44.4763 15.4491 603.109 GGYGGGRC 29.5217 7.1885 567.617 RKRGGYGG 50.5389 23.129 448.739 TNYGAWTG 24.52 6.26647 433.496 AATBARMD 36.7464 15.601 333.788 TTGGHTRN 38.0263 16.8287 321.617 GCGKKRCY 29.4375 12.8613 236.997 ATTWRCAT 6.4163 0.681 219.818 DRKGGGCG 31.8121 15.6582 199.988 RGGYSGAG 22.2802 9.67974 170.148 GGCSGWGC 13.5062 4.2984 165.393 TWATTNRY 15.6955 6.37722 128.86 GGGYGTGG 10.256 3.14125 128.597 CAMTCAVB 26.8609 14.5153 124.399 KGSGCRTG 14.8872 6.05646 120.839 CGGKRCBK 25.4968 13.6033 120.769 GCGCABGC 8.10037 2.19598 117.28 RGKAGGBG 28.8144 16.6441 110.319 RCCRATMS 17.3291 7.99216 109.951 CGCANGCG 7.25834 1.90534 108.312 ACWTMCGG 5.75951 1.2873 102.004 GTSACRTV 11.3001 4.34432 98.0669 TCSRCCYH 30.1617 18.3753 96.8138 TYYYATTG 16.0155 7.49143 96.6409 YTWATTBR 15.1735 6.97397 94.5321 ATNMRAAH 21.5729 11.717 92.368 GGYGTGGC 8.89188 3.04308 91.855 RGGBASGG 21.455 11.7465 89.4454 TRATTSGA 6.24789 1.69523 87.6609 TGGMTRND 41.3607 28.8802 83.5062 GATTSGAY 5.9616 1.61459 83.3577 TGTMDNTM 22.196 12.8546 77.3316 GATYSGTR 6.66891 2.09795 75.933 AYGTSACY 8.84136 3.36941 75.0547 ATTNNCAT 10.8286 4.64352 74.3802 CTTMCGGB 9.46447 3.78516 73.7722 KAGGBMGG 22.095 12.9455 73.6932 GCSGAGCB 14.3819 7.1159 73.2791 TTGGHCRR 17.1438 9.13857 73.2436 CGGAAGTV 6.75312 2.19503 73.067 AAYAAAVR 11.7885 5.33719 72.4841 TGANYGAC 7.89828 2.88731 71.2634 TDCAAAYN 13.7588 6.75724 70.8475 TGACRTMA 5.06905 1.37314 69.3155 AMTSRCWR 26.1536 16.5015 68.8427 CSAATAGN 10.677 4.77013 66.4769 ACCMCRCC 10.4581 4.62964 66.2886 TWRMATAH 8.16773 3.26771 61.9614 AWVRCAAV 19.2994 11.3222 61.395 DAAYAAAV 12.7147 6.50545 57.1579 GDAGGGGS 17.4806 10.1072 56.9683 TTSGYTCN 18.0701 10.636 55.6041 AHCYGGAA 8.47087 3.66497 54.321 WTGTAKTY 5.64163 1.93365 54.0596 GGGYGKGY 18.4069 11.0453 52.7889 GSAWRYGD 27.0125 18.2377 52.0726 GGGNNCGG 23.4422 15.207 52.0476 ACGSCCMY 10.3233 5.03513 50.728 HRGCAASN 29.2354 20.5498 46.6207 WGCGMRCG 6.56787 2.66407 46.2644 ANMGRHAG 32.9067 23.8462 46.2356 AYGAWTGG 5.37218 1.94354 46.0469 ATTBGYYT 11.7716 6.25799 45.9704 GCKGGRCR 16.4534 9.86431 45.6196 RGCAASND 29.4712 21.0493 42.7084 CSWATCCS 9.3971 4.75539 40.3825 AMTCARGW 8.65611 4.23245 40.3677 AATTSGYT 5.01852 1.87075 39.8742 RAATKHAV 16.1334 9.97527 38.8549 GCRMGCKC 10.256 5.45527 38.4147 GGGACTTB 6.24789 2.67214 38.3863 ATYSGTRV 11.3843 6.34525 37.2742 GGWSGAGB 20.7982 13.9633 36.704 RTGCGCAS 4.32806 1.55068 35.9601 RGAKSGMG 22.8528 15.8128 35.3533 TTTGWAWH 6.58471 2.98881 35.1596 RYAARSAH 22.1455 15.2255 35.0664 THAARATR 6.51735 2.95539 34.7891 TNCVKDTC 31.8794 23.913 34.1647 WGKGKGTG 12.5126 7.36442 34.0875 ADAATWHA 7.64567 3.75939 33.8238 RSAARGSR 36.3759 28.0872 33.7101 AAGATGBH 6.88784 3.24304 33.6162 GGCHGGRN 38.262 29.9173 32.968 DVGMTCYG 31.1553 23.3617 32.9595 HAAGATGS 5.3385 2.24104 32.9038 AATVGRAR 12.7989 7.67183 32.4904 ACWACRAM 3.95756 1.41039 32.4528 TCRNTCAW 8.4035 4.38038 31.677 TGSGYAGD 12.7484 7.68978 31.4165 YHRGCAAS 16.6554 10.8616 31.2124 CGDRVGCG 16.8407 11.0167 31.1846 TATBYATW 3.85652 1.39322 30.5088 WYRCWMAS 27.6861 20.4735 30.2238 CGTYACKN 7.20781 3.59346 29.9494 RKGGSAGG 19.9057 13.7136 29.5038 TCACRTGR 5.13641 2.22504 28.8488 CTGGGMDD 30.6501 23.3686 27.8688 ATGACGWM 2.66083 0.784235 27.8338 ATCMSAGN 15.8471 10.4156 27.8009 VAATKAGV 14.5672 9.37799 27.552 GGCGKGYC 10.5423 6.23002 26.4039 GGACTWSM 8.58875 4.7495 26.2267 RGGMYGGR 24.2337 17.7621 26.0349 AATKAVGD 10.8959 6.53282 25.8951 GAWVSMGR 33.5803 26.3462 25.0421 ACGKCACR 2.91344 0.9803 24.4055 GSTGGGDR 23.2907 17.1017 24.0388 GTARTTHN 7.72988 4.21512 23.9097 TSGCTRBC 14.1967 9.32614 23.6672 KCKTMCGG 6.61839 3.45095 22.7876 AGDHMGWR 34.355 27.4246 21.7089 WWCAASWH 16.706 11.6055 21.2689 WCRRANSC 36.9485 29.9219 21.1839 AKKGACAG 6.19737 3.2315 20.7269 CGTSRYCD 14.7524 10.0317 20.2129 AATGTAGT 1.31357 0.257152 19.9881 ARGANMSA 26.423 20.3126 19.8177 TARCATYW 4.10913 1.82425 19.7485 GGGASGAG 7.10677 3.95285 19.4798 TBCTGGGW 11.1485 7.11305 19.3913 GASDAVGR 29.4207 23.1231 19.1683 RGCCTATV 5.20377 2.58682 19.1647 GMGCRAGS 9.27922 5.65006 18.911 AYYNACCA 11.5696 7.49234 18.8092 AAAARMAA 5.89424 3.09249 18.7864 KHRCTVGG 25.5978 19.6811 18.6733 WWAGAWAH 9.90232 6.15776 18.6598 YTTGTYTV 9.26238 5.66092 18.4869 TTGHYATR 5.03537 2.50081 18.3086 WCGTSATC 2.79555 1.04093 18.2753 GTGKGRCB 16.6723 11.877 17.5459 TGGGGYGG 6.88784 3.88645 17.4091 GGNCGGTG 5.25429 2.70792 16.9442 AYWTRAAA 4.41226 2.12013 16.899 TGAVTGGB 9.90232 6.27236 16.7775 KACGSAHG 5.05221 2.57776 16.5989 DKCCTGGR 19.6531 14.6033 16.1801 ASAWRMSA 17.7332 12.9688 15.6014 GGMWRAGV 31.9299 25.8662 15.5796 GCGHRCGD 9.49815 6.0229 15.5728 CCAGTVAB 10.5254 6.87611 15.2575 CSRGRTCB 15.3924 10.9701 15.2284 WGMRTDYG 17.127 12.4825 15.1247 TGCSARTC 4.47962 2.23706 14.9575 TCAAGWWC 2.66083 1.04031 14.8703 RCCTATSR 5.10273 2.70391 14.3849 AMACWACA 3.25025 1.42641 14.3192 RAAGHGAV 16.6891 12.2056 13.9709 MWAATGAR 5.82688 3.26839 13.6896 GSTHAGDK 24.0822 18.8403 13.6727 AWKTCYCA 7.93196 4.89397 13.6152 DAATTCTR 3.41866 1.5685 13.308 GACYMCGC 5.86056 3.31283 13.2895 GSADRYMG 31.2395 25.5438 12.9814 WGTGYGYW 9.12765 5.8943 12.9225 AAYYCKRA 9.53183 6.22342 12.9148 ARTTTMRA 4.39542 2.25994 12.828 RAGKRKGY 29.7238 24.1572 12.7336 TATDTAMC 2.02088 0.713246 12.6202 RSWTMCTG 13.742 9.8136 12.1679 ARGSASGA 10.8959 7.40305 12.1601 WKCAAAGN 11.7211 8.10184 12.0702 AGGYVGGY 14.9714 10.8997 11.8991 GGCSGWAS 7.99933 5.05809 11.7966 RTCKSTMD 17.2785 12.9422 11.6862 ATWYATWW 3.9744 2.0126 11.5334 TATSGCGA 1.11149 0.262443 11.3563 WASRWAVY 29.6564 24.282 11.2767 GAGABMGR 13.0852 9.35194 10.9905 SDTCKCTV 22.5497 17.7711 10.8213 TWMKTATK 4.10913 2.1396 10.7461 GGKBCTKG 18.5079 14.1387 10.6778 DAGGBRTG 14.8535 10.9149 10.6345 ABWTGTAR 4.78276 2.65188 10.2644 AYTVGGYA 6.21421 3.74092 10.2553 GYRACKCR 7.42674 4.69925 10.222 ACTTCCGY 3.18289 1.516 10.1119 ACYCTAAC 1.66723 0.56518 10.0598 ATAGGMYR 5.01852 2.84303 9.945 CVGYAGCS 14.2641 10.4698 9.90971 TARTTTDA 2.45874 1.0479 9.789 TBTGASTG 6.44998 3.95693 9.69903 TGYTTWSA 5.8774 3.51975 9.53385 AAGSKMRG 16.0155 12.0595 9.37962 TGTGYWTD 7.03941 4.44804 9.29811 AGGYRTGK 7.66251 4.94908 9.29139 DGGAMADG 21.3035 16.832 9.16866 GGRRTDTG 10.3402 7.17902 9.06217 RMGAKGCG 8.4035 5.58706 8.79915 GKCGMRCG 5.8774 3.56648 8.70238 RGACAARS 7.30886 4.70533 8.66134 CGHRMCGV 14.0957 10.451 8.58245 CRGGTCBB 15.6282 11.8096 8.48591 CTYGCKCR 5.82688 3.54533 8.38348 AGMGAHSV 22.0276 17.5994 8.30528 AKCRCRTG 5.10273 2.99163 8.27311 AASBGAMA 7.59515 4.96877 8.19419 WGYCRTTG 6.63523 4.19791 8.14972 SWAVGCAV 20.7814 16.4839 8.11852 GGCSGAGK 7.9488 5.27158 7.99518 TWYCCAKR 12.3779 9.02835 7.82718 DAVGGTGG 9.96969 6.97549 7.73164 ATSARAWG 6.38262 4.02668 7.67095 RNHTCMAG 33.0414 28.0159 7.49783 GCWDCGRY 11.3001 8.13191 7.46914 KCSGGTCB 9.21186 6.36484 7.39585 TWTMWAAR 7.9488 5.31527 7.39162 TGGACMRA 4.15965 2.32692 7.33162 WRCTMAGK 10.8959 7.83335 6.93414 ATYAGCRW 4.3449 2.48867 6.86159 KRYCTKWG 21.4887 17.3337 6.52857 AAAHMKAA 6.43314 4.14095 6.52838 GNAMGAWV 18.8953 14.9708 6.47296 WWACKGWH 12.2095 9.02 6.3939 TSBKTACY 8.92556 6.21223 6.31364 AMACACAW 3.01448 1.54977 6.03963 GCGMRMCG 5.23745 3.23134 5.86187 GCYKYGCG 8.16773 5.61568 5.83383 AKCCAACC 3.28393 1.75833 5.67475 SYTCMAGB 26.3557 21.9768 5.65466 AGGGCGTG 2.62715 1.29662 5.5575 TCSRATMG 3.50286 1.9272 5.47808 TGRMCTTG 4.19333 2.44688 5.43515 AAYATGGC 1.76827 0.731422 5.4299 TCTCGCGA 1.04412 0.314446 5.3013 GRGYMMCG 13.5568 10.3181 5.28774 ARMBTTGM 12.5295 9.41487 5.26191 TYGGTGVA 5.52375 3.49533 5.2546 GCAGGCGC 3.38498 1.85415 5.17905 TTGTTKTS 3.50286 1.94134 5.17296 ATAHAAGV 4.14281 2.4237 5.14351 ACTSAAAR 3.36814 1.84526 5.10247 AYKCTRGG 7.56147 5.16997 5.07789 WAGAWANG 8.25194 5.74983 5.05044 TWCSGYCC 6.11317 3.98997 4.93969 DCGCGCAS 5.3385 3.37017 4.90312 RCCSARTS 14.2809 11.0161 4.80033 TCCCCKCC 7.57831 5.21104 4.73611 GGWRCCKG 10.4917 7.70406 4.59766 ACCGYCCM 5.01852 3.13845 4.54986 CGGYYKCG 5.30482 3.36687 4.53417 ACACWSTA 2.40822 1.18756 4.40181 RSATGCTS 6.83732 4.62609 4.34466 AYHCATWC 3.94072 2.31901 4.20863 TKCTAATG 1.56618 0.638065 4.19755 TMGNCCCG 6.06265 4.00673 4.11639 CGGYTCSG 3.87336 2.27313 4.10377 GCAACHRG 5.01852 3.16712 4.09162 ATAWRRTW 3.85652 2.26241 4.06361 WCGGYCGS 3.50286 2.00427 3.87162 TSRAATTM 2.71135 1.42758 3.73778 GACMGADR 8.53823 6.10563 3.73718 TAKSGTWW 3.60391 2.09255 3.63745 GANSTMAG 12.2432 9.34051 3.61289 TRATTSGG 4.29438 2.62737 3.58343 RNCGATYG 5.4227 3.52592 3.56297 GRAKABGV 27.0293 22.9406 3.5556 TTAGGGDA 2.69451 1.42354 3.54612 AATDAATG 1.80195 0.807665 3.53096 TTAGARTR 2.20613 1.0806 3.50834 TGRGAWMS 11.8558 9.01882 3.42715 GCGCAGHS 8.43718 6.05104 3.38798 ACTGKCCA 2.82924 1.53348 3.26251 GWCAKGTG 3.77231 2.24232 3.23982 AATTACHD 2.96396 1.63534 3.19563 GTTYRMAV 10.0539 7.47769 3.05671 GRTVGATS 4.12597 2.52756 3.04319 SGYCGTYS 6.07949 4.10361 2.98941 TGGGASGG 4.74907 3.02496 2.96138 ATGYMKAT 2.15561 1.06843 2.88864 ACAACHCM 4.56383 2.88276 2.87807 RKGGAWSG 13.5231 10.5688 2.85398 TCSCTCCC 5.06905 3.29057 2.82943 AHATACAC 1.29673 0.508279 2.79042 AGRCAYRC 5.27114 3.45918 2.75617 AMMCCCAC 5.00168 3.24154 2.75184 GHAYTTSC 8.2351 5.93804 2.73802 YGGCCGWD 5.59111 3.72329 2.70964 ACMGRNAM 16.3018 13.1338 2.45475 AGACTMSR 5.54059 3.70133 2.44585 GSGAAGGG 4.71539 3.03571 2.38891 RYCGTWCK 2.81239 1.56458 2.31344 ASDGCAAV 11.0643 8.4469 2.28716 AWASKHAA 8.58875 6.29335 2.19833 TAANTACB 2.57663 1.39685 2.19207 ARGTMCTR 5.47322 3.66507 2.18999 CGADGSGS 9.14449 6.77787 2.16403 GCTGCYKR 12.4453 9.69441 2.11266 KCRCTGHG 11.3001 8.67649 2.10271 GCCTGGRN 14.4662 11.5217 2.03898 CCTRTCAV 6.68575 4.68758 2.01107 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 0 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete