Task #3392 - 728be626 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 9 minutes (568sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) GGGYGGGG 23.9492 6.35639 308.617 GGGGYGKG 27.4081 9.24622 261.596 GGCGKGGC 22.7671 6.99953 240.394 RKGGGYGG 31.7644 15.1283 164.377 RRCCAATS 11.6681 3.48533 116.634 GCGCABGC 13.5508 4.53385 116.375 RCCAATSR 11.0989 3.26948 112.436 GGGHGGAG 21.1909 9.71364 107.572 ATTGGYYR 9.36953 2.63118 99.2812 CGCANGCG 12.4124 4.46706 92.9393 GCGGGGCB 21.7382 10.8921 88.6859 WTWNATAS 10.3327 3.46056 85.0128 TCSRMCYC 24.7373 13.4503 82.5618 TATNHAWD 16.331 7.48202 78.1715 GTCACGTG 4.31261 0.691961 78.1006 CCAATSRV 13.6384 5.85108 73.1925 RCTTCCGK 10.4422 3.99335 67.701 GGGGNCGG 17.3161 8.62738 67.5692 ACGTBACB 8.80035 3.04028 66.8524 GGCSGAGC 12.8503 5.56731 66.5988 CRTGCGCR 7.85902 2.61605 62.4275 AAKATGGC 4.13748 0.802247 61.6377 CGGGGCSK 17.7758 9.32104 60.1239 WGGGYGGG 17.4256 9.11318 59.084 GGGCGTGG 6.76445 2.17393 55.4969 AAWVMRAA 15.6743 8.03322 54.8512 DRGGGGCG 21.6725 12.6341 54.4403 TWCRANTC 7.15849 2.4883 51.7295 GKARGBGG 27.8897 17.9746 50.8669 TGACGTMA 3.34939 0.626294 50.1265 CRCTTCCK 10.9019 5.03523 46.4241 GAKGSSGG 23.5989 14.8409 44.7436 GGGAGGGG 8.25306 3.44471 42.124 WTCGAACC 1.97023 0.236722 40.645 TTYCDKTY 19.1112 11.5023 40.3034 AHDCRMAC 15.7837 8.90857 40.0491 AGGCDKDG 31.1296 21.7005 39.5926 GTRACGTM 3.831 0.99052 39.2478 RMCGGAAG 9.36953 4.29371 39.1037 TSVSTTHS 37.2811 27.589 35.9397 GGGSAGGG 11.3179 5.81922 35.5593 DTSGYTDS 34.2382 25.0292 33.8745 KBTSAKTG 17.7102 10.8451 33.5409 GCAVGCRC 13.4632 7.52508 33.4677 CGGBGKCG 16.5499 10.1734 29.8893 ARYRMRCA 18.4545 11.7757 29.1554 TCHRKSTY 32.662 24.1254 28.8821 WYGTMRTY 8.9317 4.44536 28.7534 CCATMTTS 4.31261 1.46404 28.6993 TGNGYSTG 20.0963 13.181 28.5959 GGWGGRGY 22.176 15.0956 26.7822 ACGCAYGC 2.78021 0.709636 26.5835 ATDYAAAK 5.14448 2.01779 26.4498 AKMHAAGV 21.7163 14.7688 26.0616 TCACGTGD 4.94746 1.92877 25.4541 RGRKKAGG 26.0508 18.6571 24.7281 AMBSANAG 27.6051 20.0672 24.4011 KCGGWGCS 17.732 11.6073 23.8633 TCTCGCGA 2.32049 0.543542 23.7677 AKATGGCG 3.52452 1.14863 23.7526 TGTAGTYY 3.94046 1.38941 23.4688 AKGKHVGA 23.3581 16.4934 22.8199 GGSCGGGM 20.0088 13.755 21.2921 AYARVMAM 21.9352 15.4298 21.1094 KASSTHAG 13.9229 8.74733 20.6439 ABTTGWAV 7.99037 4.18233 20.5473 GRCCACGC 5.6042 2.52628 20.4324 RGGAYYBR 33.7785 26.2058 19.8403 WGCGHGCG 11.1865 6.63435 19.8348 CGTBRCYD 22.9203 16.4306 19.725 WTATBYAW 5.01313 2.17116 19.5935 AAWVVYAA 12.8284 7.96547 19.3625 DSTYGSTD 33.2531 25.8121 19.1242 GGYWRSGR 33.4939 26.0986 18.6321 GGAYYBRR 31.9834 24.7102 18.5902 SCGARCGV 14.0543 9.14854 17.0075 ACHBRGAH 26.9046 20.2898 16.9456 RWKCSHAG 29.7504 22.9277 16.527 TGCGCAGK 4.77233 2.13814 16.3696 WRKGGKTR 17.1191 11.7785 16.2616 CGSWGCCD 23.9054 17.6901 16.2234 KGBCTRDG 36.0333 28.8154 16.072 ACGCCCMY 7.50876 4.09244 15.777 AGMGAHRV 23.5771 17.5106 15.27 GCGRYGGC 12.5876 8.10423 15.1527 ATGRCGDC 5.95447 3.00366 15.1019 RGWGSGMG 33.1655 26.2795 15.0467 AVACTSAV 12.5219 8.14469 14.0362 GTCCCRCC 6.72067 3.62058 13.8715 GGCBGWGK 25.3503 19.2758 13.8458 AWGMVAAA 7.68389 4.34759 13.7004 GWGCGMGC 9.74168 5.94704 13.5504 WHNSTAWC 14.9299 10.2463 12.9708 CATMTTVV 6.78634 3.75703 12.3547 AAWTMRAW 4.24694 1.98752 11.5344 WCCMCGCC 12.2373 8.1535 11.2867 GGCGDCGG 11.1208 7.25334 11.0771 ANRGBAAG 18.6296 13.6658 10.8337 GCWDCGGC 11.8651 7.88836 10.8186 TATSGCGA 1.31349 0.292715 10.7437 ACTACAWN 3.41506 1.47109 10.7205 RVCWKAGM 36.2084 29.8421 10.4216 AGAMMVAD 21.4098 16.1801 10.4136 ATCACGTG 1.46673 0.367576 10.3621 AMTCAHYR 8.29685 5.05142 10.2827 TAMDHAWA 7.88091 4.73189 10.2046 ASHARCBA 17.3818 12.6566 10.1328 SGYWCGGB 19.155 14.2237 10.0455 GRRVGKTG 26.5981 20.9716 9.75859 WSSGAYYG 15.9807 11.5245 9.388 TWYAAAGN 9.15061 5.79918 9.38255 ATTSGHTY 4.31261 2.13245 9.33397 GRGCCGRG 12.9816 9.01204 8.86432 MVTKCSTD 32.5525 26.7061 8.49813 RGGWAVGG 15.0832 10.8578 8.42528 GCADAGMN 22.373 17.3318 8.30376 TTRCYTWV 8.4063 5.29506 8.2445 GGTWAGHR 5.42907 2.99657 8.20644 GAASBMRG 26.7951 21.3929 8.16854 ASDAHGSA 16.6813 12.2787 8.16832 GVGTMACG 4.5972 2.39883 8.04199 ACTGAWAM 2.58319 1.04227 7.98732 CGARCGNK 11.0114 7.45408 7.89816 ARSTMAST 8.55954 5.44624 7.8959 TTYRWAAK 6.04203 3.47651 7.8825 TGARMTAH 4.40018 2.27031 7.80633 GAARTGHM 9.41331 6.14813 7.7715 DACTTCCG 4.46585 2.32659 7.62838 GKTGGKGG 7.37741 4.53075 7.58008 TGTYWVTM 10.0044 6.67878 7.26917 WACGGWAM 2.40806 0.971324 6.86857 AAATGAKA 1.66375 0.541167 6.68815 AGYSTBDG 30.4072 25.0187 6.56319 AWVWATKA 5.14448 2.88893 6.49309 CGMMTCCD 15.127 11.1485 6.30003 AGCMACRS 9.91681 6.70174 6.26505 TTAKMRAN 8.95359 5.91295 6.2011 TKMGTCAY 4.0937 2.14486 6.02896 TTCCKKMY 16.0245 11.9872 5.89924 AAVARAAY 8.20928 5.346 5.74883 CGGWKCGV 13.4413 9.75332 5.71657 MGACYNKR 29.6848 24.5295 5.48796 GARGRGGM 20.4904 16.0446 5.44677 GASNDASG 32.0928 26.8098 5.43231 AKYYCAGR 15.7837 11.843 5.37845 AHCTTKRW 8.31874 5.4704 5.35375 THWGMGTY 10.3109 7.12302 5.34421 GKAWGTGY 5.97636 3.60671 5.263 AAAWTMAW 3.17426 1.53794 5.22927 ATVGYGAD 6.06392 3.68254 5.15964 CNGGGACN 21.7163 17.2198 5.05496 TTRAWMWW 7.96848 5.21463 5.02085 WRCYATSK 10.4422 7.2793 4.90805 TTWKCWTS 7.64011 4.95831 4.9029 ATCATNRW 3.21804 1.59702 4.61867 TNRRATTM 7.55254 4.91981 4.53271 TWTHGWAW 4.92557 2.85367 4.47265 ACGTGATV 1.86077 0.716913 4.39607 GGCGMRCG 9.87303 6.85848 4.3492 CATRGYKR 8.27496 5.5368 4.24852 THCRGWTC 6.10771 3.79175 4.17719 GYGRCCGD 14.6891 11.041 4.14816 AAARSDSA 18.5639 14.5217 3.9987 CDGGGYTR 16.2872 12.4862 3.94509 KTADKTAS 4.48774 2.5619 3.87086 GGDGYHTG 19.352 15.285 3.6785 AHAMDGTA 4.66287 2.70908 3.64815 ACVYACWW 7.83713 5.24849 3.48754 ADTTHCCA 6.32662 4.0241 3.45513 TYCSTCCC 8.71278 5.9783 3.45358 ATYCAWTB 3.26182 1.6882 3.41897 GMGDASGG 16.7469 12.9758 3.40584 CGTMACGR 2.05779 0.872798 3.38877 RDBCCTGG 25.1751 20.6941 3.37294 CSGMCTCK 14.0105 10.5772 3.15123 GHTHCGRK 18.1261 14.266 3.09378 WARTGTAG 2.18914 0.969315 3.07288 AMATACAC 1.16025 0.354778 3.05744 MRGGTTMS 10.3327 7.39129 3.05466 TRGYMKAG 9.9387 7.05876 3.02254 GDCBGTRC 12.303 9.11239 2.89919 TCRTWTBC 4.5972 2.71283 2.85868 GTTYGWWM 3.80911 2.12161 2.80081 GSCTKGSC 19.3301 15.4119 2.76882 AWGKMMAA 7.70578 5.2179 2.68415 TKCYKKKA 20.2496 16.2749 2.63213 CRVKACCD 19.4834 15.5856 2.56423 GGDGYTVG 21.4974 17.4394 2.52621 TGTATKTS 1.66375 0.66218 2.35522 TTCAWHTW 3.59019 1.9899 2.29872 AGAMMDAC 6.41419 4.19672 2.27563 RGBTTSGG 11.9089 8.85405 2.2399 GTCAYCRH 6.47986 4.25511 2.22021 ABTSGTAG 2.51751 1.22639 2.21082 CDKCCKGG 24.4965 20.2814 2.18958 AKWTAVAA 4.55342 2.72724 2.17892 TGAMHWCA 6.02014 3.89574 2.07267 TCSTMCCV 13.4194 10.2051 2.07005 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 0 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete