Motif finder

Task #3392 - 728be626

Status Start End Updated Duration Sequences Logs Task Bundle
finished 13 days ago 13 days ago 13 days ago 9 minutes (568sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
GGGYGGGG 23.9492 6.35639 308.617
GGGGYGKG 27.4081 9.24622 261.596
GGCGKGGC 22.7671 6.99953 240.394
RKGGGYGG 31.7644 15.1283 164.377
RRCCAATS 11.6681 3.48533 116.634
GCGCABGC 13.5508 4.53385 116.375
RCCAATSR 11.0989 3.26948 112.436
GGGHGGAG 21.1909 9.71364 107.572
ATTGGYYR 9.36953 2.63118 99.2812
CGCANGCG 12.4124 4.46706 92.9393
GCGGGGCB 21.7382 10.8921 88.6859
WTWNATAS 10.3327 3.46056 85.0128
TCSRMCYC 24.7373 13.4503 82.5618
TATNHAWD 16.331 7.48202 78.1715
GTCACGTG 4.31261 0.691961 78.1006
CCAATSRV 13.6384 5.85108 73.1925
RCTTCCGK 10.4422 3.99335 67.701
GGGGNCGG 17.3161 8.62738 67.5692
ACGTBACB 8.80035 3.04028 66.8524
GGCSGAGC 12.8503 5.56731 66.5988
CRTGCGCR 7.85902 2.61605 62.4275
AAKATGGC 4.13748 0.802247 61.6377
CGGGGCSK 17.7758 9.32104 60.1239
WGGGYGGG 17.4256 9.11318 59.084
GGGCGTGG 6.76445 2.17393 55.4969
AAWVMRAA 15.6743 8.03322 54.8512
DRGGGGCG 21.6725 12.6341 54.4403
TWCRANTC 7.15849 2.4883 51.7295
GKARGBGG 27.8897 17.9746 50.8669
TGACGTMA 3.34939 0.626294 50.1265
CRCTTCCK 10.9019 5.03523 46.4241
GAKGSSGG 23.5989 14.8409 44.7436
GGGAGGGG 8.25306 3.44471 42.124
WTCGAACC 1.97023 0.236722 40.645
TTYCDKTY 19.1112 11.5023 40.3034
AHDCRMAC 15.7837 8.90857 40.0491
AGGCDKDG 31.1296 21.7005 39.5926
GTRACGTM 3.831 0.99052 39.2478
RMCGGAAG 9.36953 4.29371 39.1037
TSVSTTHS 37.2811 27.589 35.9397
GGGSAGGG 11.3179 5.81922 35.5593
DTSGYTDS 34.2382 25.0292 33.8745
KBTSAKTG 17.7102 10.8451 33.5409
GCAVGCRC 13.4632 7.52508 33.4677
CGGBGKCG 16.5499 10.1734 29.8893
ARYRMRCA 18.4545 11.7757 29.1554
TCHRKSTY 32.662 24.1254 28.8821
WYGTMRTY 8.9317 4.44536 28.7534
CCATMTTS 4.31261 1.46404 28.6993
TGNGYSTG 20.0963 13.181 28.5959
GGWGGRGY 22.176 15.0956 26.7822
ACGCAYGC 2.78021 0.709636 26.5835
ATDYAAAK 5.14448 2.01779 26.4498
AKMHAAGV 21.7163 14.7688 26.0616
TCACGTGD 4.94746 1.92877 25.4541
RGRKKAGG 26.0508 18.6571 24.7281
AMBSANAG 27.6051 20.0672 24.4011
KCGGWGCS 17.732 11.6073 23.8633
TCTCGCGA 2.32049 0.543542 23.7677
AKATGGCG 3.52452 1.14863 23.7526
TGTAGTYY 3.94046 1.38941 23.4688
AKGKHVGA 23.3581 16.4934 22.8199
GGSCGGGM 20.0088 13.755 21.2921
AYARVMAM 21.9352 15.4298 21.1094
KASSTHAG 13.9229 8.74733 20.6439
ABTTGWAV 7.99037 4.18233 20.5473
GRCCACGC 5.6042 2.52628 20.4324
RGGAYYBR 33.7785 26.2058 19.8403
WGCGHGCG 11.1865 6.63435 19.8348
CGTBRCYD 22.9203 16.4306 19.725
WTATBYAW 5.01313 2.17116 19.5935
AAWVVYAA 12.8284 7.96547 19.3625
DSTYGSTD 33.2531 25.8121 19.1242
GGYWRSGR 33.4939 26.0986 18.6321
GGAYYBRR 31.9834 24.7102 18.5902
SCGARCGV 14.0543 9.14854 17.0075
ACHBRGAH 26.9046 20.2898 16.9456
RWKCSHAG 29.7504 22.9277 16.527
TGCGCAGK 4.77233 2.13814 16.3696
WRKGGKTR 17.1191 11.7785 16.2616
CGSWGCCD 23.9054 17.6901 16.2234
KGBCTRDG 36.0333 28.8154 16.072
ACGCCCMY 7.50876 4.09244 15.777
AGMGAHRV 23.5771 17.5106 15.27
GCGRYGGC 12.5876 8.10423 15.1527
ATGRCGDC 5.95447 3.00366 15.1019
RGWGSGMG 33.1655 26.2795 15.0467
AVACTSAV 12.5219 8.14469 14.0362
GTCCCRCC 6.72067 3.62058 13.8715
GGCBGWGK 25.3503 19.2758 13.8458
AWGMVAAA 7.68389 4.34759 13.7004
GWGCGMGC 9.74168 5.94704 13.5504
WHNSTAWC 14.9299 10.2463 12.9708
CATMTTVV 6.78634 3.75703 12.3547
AAWTMRAW 4.24694 1.98752 11.5344
WCCMCGCC 12.2373 8.1535 11.2867
GGCGDCGG 11.1208 7.25334 11.0771
ANRGBAAG 18.6296 13.6658 10.8337
GCWDCGGC 11.8651 7.88836 10.8186
TATSGCGA 1.31349 0.292715 10.7437
ACTACAWN 3.41506 1.47109 10.7205
RVCWKAGM 36.2084 29.8421 10.4216
AGAMMVAD 21.4098 16.1801 10.4136
ATCACGTG 1.46673 0.367576 10.3621
AMTCAHYR 8.29685 5.05142 10.2827
TAMDHAWA 7.88091 4.73189 10.2046
ASHARCBA 17.3818 12.6566 10.1328
SGYWCGGB 19.155 14.2237 10.0455
GRRVGKTG 26.5981 20.9716 9.75859
WSSGAYYG 15.9807 11.5245 9.388
TWYAAAGN 9.15061 5.79918 9.38255
ATTSGHTY 4.31261 2.13245 9.33397
GRGCCGRG 12.9816 9.01204 8.86432
MVTKCSTD 32.5525 26.7061 8.49813
RGGWAVGG 15.0832 10.8578 8.42528
GCADAGMN 22.373 17.3318 8.30376
TTRCYTWV 8.4063 5.29506 8.2445
GGTWAGHR 5.42907 2.99657 8.20644
GAASBMRG 26.7951 21.3929 8.16854
ASDAHGSA 16.6813 12.2787 8.16832
GVGTMACG 4.5972 2.39883 8.04199
ACTGAWAM 2.58319 1.04227 7.98732
CGARCGNK 11.0114 7.45408 7.89816
ARSTMAST 8.55954 5.44624 7.8959
TTYRWAAK 6.04203 3.47651 7.8825
TGARMTAH 4.40018 2.27031 7.80633
GAARTGHM 9.41331 6.14813 7.7715
DACTTCCG 4.46585 2.32659 7.62838
GKTGGKGG 7.37741 4.53075 7.58008
TGTYWVTM 10.0044 6.67878 7.26917
WACGGWAM 2.40806 0.971324 6.86857
AAATGAKA 1.66375 0.541167 6.68815
AGYSTBDG 30.4072 25.0187 6.56319
AWVWATKA 5.14448 2.88893 6.49309
CGMMTCCD 15.127 11.1485 6.30003
AGCMACRS 9.91681 6.70174 6.26505
TTAKMRAN 8.95359 5.91295 6.2011
TKMGTCAY 4.0937 2.14486 6.02896
TTCCKKMY 16.0245 11.9872 5.89924
AAVARAAY 8.20928 5.346 5.74883
CGGWKCGV 13.4413 9.75332 5.71657
MGACYNKR 29.6848 24.5295 5.48796
GARGRGGM 20.4904 16.0446 5.44677
GASNDASG 32.0928 26.8098 5.43231
AKYYCAGR 15.7837 11.843 5.37845
AHCTTKRW 8.31874 5.4704 5.35375
THWGMGTY 10.3109 7.12302 5.34421
GKAWGTGY 5.97636 3.60671 5.263
AAAWTMAW 3.17426 1.53794 5.22927
ATVGYGAD 6.06392 3.68254 5.15964
CNGGGACN 21.7163 17.2198 5.05496
TTRAWMWW 7.96848 5.21463 5.02085
WRCYATSK 10.4422 7.2793 4.90805
TTWKCWTS 7.64011 4.95831 4.9029
ATCATNRW 3.21804 1.59702 4.61867
TNRRATTM 7.55254 4.91981 4.53271
TWTHGWAW 4.92557 2.85367 4.47265
ACGTGATV 1.86077 0.716913 4.39607
GGCGMRCG 9.87303 6.85848 4.3492
CATRGYKR 8.27496 5.5368 4.24852
THCRGWTC 6.10771 3.79175 4.17719
GYGRCCGD 14.6891 11.041 4.14816
AAARSDSA 18.5639 14.5217 3.9987
CDGGGYTR 16.2872 12.4862 3.94509
KTADKTAS 4.48774 2.5619 3.87086
GGDGYHTG 19.352 15.285 3.6785
AHAMDGTA 4.66287 2.70908 3.64815
ACVYACWW 7.83713 5.24849 3.48754
ADTTHCCA 6.32662 4.0241 3.45513
TYCSTCCC 8.71278 5.9783 3.45358
ATYCAWTB 3.26182 1.6882 3.41897
GMGDASGG 16.7469 12.9758 3.40584
CGTMACGR 2.05779 0.872798 3.38877
RDBCCTGG 25.1751 20.6941 3.37294
CSGMCTCK 14.0105 10.5772 3.15123
GHTHCGRK 18.1261 14.266 3.09378
WARTGTAG 2.18914 0.969315 3.07288
AMATACAC 1.16025 0.354778 3.05744
MRGGTTMS 10.3327 7.39129 3.05466
TRGYMKAG 9.9387 7.05876 3.02254
GDCBGTRC 12.303 9.11239 2.89919
TCRTWTBC 4.5972 2.71283 2.85868
GTTYGWWM 3.80911 2.12161 2.80081
GSCTKGSC 19.3301 15.4119 2.76882
AWGKMMAA 7.70578 5.2179 2.68415
TKCYKKKA 20.2496 16.2749 2.63213
CRVKACCD 19.4834 15.5856 2.56423
GGDGYTVG 21.4974 17.4394 2.52621
TGTATKTS 1.66375 0.66218 2.35522
TTCAWHTW 3.59019 1.9899 2.29872
AGAMMDAC 6.41419 4.19672 2.27563
RGBTTSGG 11.9089 8.85405 2.2399
GTCAYCRH 6.47986 4.25511 2.22021
ABTSGTAG 2.51751 1.22639 2.21082
CDKCCKGG 24.4965 20.2814 2.18958
AKWTAVAA 4.55342 2.72724 2.17892
TGAMHWCA 6.02014 3.89574 2.07267
TCSTMCCV 13.4194 10.2051 2.07005

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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