Task #3649 - c523534d Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 9 minutes (594sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) GGGHGGGG 22.66 6.86475 267.844 GGGGHGGG 21.38 6.86475 230.495 RCCAATCR 10.42 1.63603 229.223 GATTGGHY 12.3 2.70494 199.05 GGCGGRGC 15.54 4.62837 178.146 ATTGGYYR 13.42 3.578 175.066 CCAATCRV 11.94 2.93589 169.814 RGGGGHGG 26.06 11.8006 157.461 GTCACRTG 6.08 0.94264 129.643 GCGCABGC 9.12 2.41245 115.005 WTGTAGTY 6.88 1.50532 105.703 CGCABGCG 6.96 1.76264 89.8706 GGGHSGAG 17.78 8.38393 89.2353 TGTAGTYY 7.66 2.20196 84.3422 ACGTSACB 8.02 2.48522 79.4478 WTWKATAS 9.7 3.50813 76.3097 TACAWNTC 7.78 2.47046 73.8158 TNYGATTG 7.48 2.41336 68.7269 GCGGDGCB 20.98 11.6586 68.4783 ACTAYAWH 9.38 3.54333 67.5768 TATMWAWR 10.6 4.36239 65.5447 GGARGBGR 28.78 18.3599 61.8935 AAWBMRAA 23.28 13.9496 59.8307 TRCGCABG 6.56 2.12307 58.6452 GAGGBVGG 23.12 13.9644 57.4165 WGGGYGGG 13.64 6.72813 57.0456 AWRSHAAB 38.22 27.1371 54.9924 ADWTGTAG 6.76 2.34616 53.7611 TCSDMCCY 24.82 15.6013 53.5287 DRGGGGYG 23.5 14.5908 52.3276 TCACRTGR 6.44 2.23803 50.6047 RCCAATRR 9.8 4.41054 48.3063 WTRMATAV 10.46 5.00728 44.4507 CMHWTCCB 37.2 27.2501 42.9559 RRCCAATR 9.16 4.21333 41.9291 AAKATGGC 3.8 1.03205 40.2882 GGGGNCGG 10.18 5.01282 39.5566 TTGSYTDN 34.7 25.3134 39.2903 GTGKGYGK 11.98 6.32582 39.1853 CGKKRCYD 30.04 21.2173 38.4604 WCVDWTCC 23.04 15.2214 37.7632 TTYCKDTY 22.26 14.5904 37.4234 GCAVGCRC 9.68 4.77679 36.8176 GGGYGGGH 15.94 9.51673 36.1749 ACTTCCGK 4.1 1.28595 34.9837 ATMWAAGV 9.88 5.02678 34.3561 TGAYGTMA 4.06 1.281 34.1884 GGGHGTKG 11.66 6.33921 34.1408 AGGCNKRG 25.42 17.595 33.5599 RTGWCGTM 4.54 1.6049 31.7177 KGKGYGTG 11.26 6.20819 30.9082 TATKYAWW 7.16 3.31228 29.9841 GGWGGRGC 13.44 7.93254 29.9599 RGWHMGAR 30.18 22.2069 29.139 GTAGTTYN 7.18 3.36263 29.0312 GGYSGRGK 23.18 16.0882 28.5558 RASWMAGR 29.02 21.4488 26.313 TKCYRGGW 20.0 13.5837 26.0034 TTYRTTTW 9.48 5.13733 26.0025 ASNSAMAG 29.08 21.6002 25.3648 TTCRADTC 4.14 1.53582 25.2986 CGGBKDCG 13.76 8.48661 25.2559 CCGCCCCR 7.08 3.4486 25.2095 WAMKGWAD 23.9 17.06 24.752 TVGCTNHG 24.6 17.6804 24.6873 RTTYGAWH 8.3 4.35088 24.4287 AGCRAVBN 37.92 29.9762 23.2494 GGGGNAGG 12.18 7.39289 22.8196 CCAATRRG 6.18 2.93296 22.6593 CTTMCGGB 7.62 3.95465 22.4388 GGCGTGGY 4.96 2.13032 22.4209 GSKYWSGG 30.2 22.9374 22.3587 ACGCAYGC 2.02 0.492999 20.8312 AGWADSBA 22.24 16.0551 20.1243 GWRCYBRG 37.52 29.9987 20.0407 AKATGGCG 3.02 1.02155 20.0287 ATTGGHYC 6.26 3.10078 19.9699 TWKATAGV 6.3 3.13285 19.8775 GGTAACTG 1.64 0.340062 19.8329 CCATMTTB 6.14 3.04125 19.4084 GTCCCGCC 3.74 1.46077 19.3459 TCYRGGWH 22.04 15.9817 19.1089 TMVKTWDC 25.66 19.2489 18.6205 AASRMAMA 16.2 11.0591 17.9128 DTGCGCAK 5.48 2.66535 17.4645 TGVGWWHK 32.12 25.3085 17.2506 WDWCYYAG 31.88 25.1042 17.1085 NAGCRASN 35.24 28.2743 16.8235 GBTSAKTG 10.62 6.56098 16.8074 ATCACRTG 2.26 0.690142 16.2554 ARWTACNW 11.42 7.24382 16.2153 AWCRAAHB 13.58 9.02953 15.9878 GGCHRNGC 28.68 22.3741 15.372 TACCTRGC 2.2 0.687315 14.8326 GWGGGGGH 13.0 8.67338 14.4826 GSTSGGHK 25.74 19.8383 14.1892 TTAGVDWH 19.76 14.4991 14.1189 ACAGWTAC 1.74 0.466977 14.0587 CGDDMGCG 10.84 6.94326 13.9617 BCADAGCN 30.44 24.2339 13.5595 TGCWAATN 5.36 2.76319 13.3822 WCSVTMSC 21.88 16.47 13.2926 ACWDASMH 34.18 27.778 13.1996 ACAASTCC 3.38 1.43484 12.9345 TGCGCASW 4.68 2.30937 12.815 RGMCTNGR 29.72 23.6726 12.778 KAAGHRAV 25.72 20.0004 12.7513 AAAAAMAA 8.16 4.92832 12.2805 TTGCYAKG 4.1 1.9484 11.901 WGGKASGG 10.42 6.76784 11.8169 TGMGYGHG 10.16 6.56356 11.7245 TAWDTACH 6.36 3.59166 11.5589 GTTGCYAG 2.58 0.993461 11.1294 GGCWDVGR 34.24 28.1676 10.9401 GGRNCTKG 21.92 16.8315 10.5935 TSTMWKTS 21.08 16.097 10.4295 WYGAAYKM 8.82 5.59148 10.2838 TGAWTKRA 5.22 2.82017 10.1933 GVGTMACG 3.82 1.8385 9.92052 SDACGVWB 26.86 21.477 9.55806 TGTTGCCA 1.62 0.490405 9.43692 ATTTAKWW 5.18 2.84624 9.14779 RGAGBDMG 35.36 29.5233 9.06915 AATBAVHG 14.78 10.6949 9.06679 WCGYSATM 5.62 3.17967 9.0472 GMCVCCGY 13.24 9.39975 8.76974 TGSCTGNH 25.82 20.6318 8.76225 ASNCARRC 25.18 20.0601 8.64084 GTTACCTG 1.2 0.298149 8.54797 GATTGGTR 2.06 0.755659 8.52538 DNYCTRAG 32.84 27.2932 8.08412 TMNTTTBA 15.94 11.8189 8.05097 TDTGYHTG 11.92 8.34635 8.05082 TCTCGCGA 1.42 0.418958 7.77747 TAWCTGTS 2.82 1.25497 7.67738 RNGCTYCG 14.16 10.3222 7.54234 GWGAVYGR 18.58 14.2405 7.38306 DAGMGAWR 16.8 12.6599 7.35054 THSRGTWY 18.2 13.9053 7.34778 TTATAGTG 1.32 0.381789 7.03551 TTYCKTMH 18.62 14.329 6.97455 AYKSTGGG 9.7 6.58203 6.96955 ATGGCBRC 6.08 3.66115 6.94642 AYMRADTA 7.76 4.99601 6.90916 TYCYATTG 4.32 2.34354 6.71481 TTYDTTTC 9.88 6.75892 6.67426 AMTKKAWW 15.22 11.3632 6.5385 ACGCCCCB 4.76 2.68609 6.41283 CVCCTCCD 18.02 13.8694 6.37671 AASAWCDA 6.2 3.79481 6.35583 RGCRYKCG 11.0 7.7384 6.29771 GAGKABGG 7.62 4.94026 6.1815 GCYGYTRC 9.08 6.13789 6.17692 AGKRBCTG 14.68 10.9438 6.07313 RGANANGG 31.16 26.0859 5.80779 GRYGGCSG 11.0 7.78855 5.79926 GRCGGTGV 6.5 4.07303 5.7725 GCVRASGS 23.64 19.1145 5.46067 AGTGKGYR 7.74 5.11126 5.2845 HCAGDRTS 24.68 20.114 5.22192 GYCGWDCG 3.9 2.11622 5.19594 RGCAACAG 3.14 1.57214 5.18784 GGCYGYYG 11.02 7.86982 5.17647 GAVTGDRB 32.96 27.9145 5.12588 ATTYMAAR 6.76 4.33936 4.9981 GCTNCGGS 10.94 7.83157 4.88895 GTCATGTG 1.22 0.37181 4.86773 TACVRABW 11.04 7.92009 4.86193 CATMTTBV 9.72 6.80805 4.7477 TCCCSGCC 5.66 3.48633 4.70106 CMGRYWCS 20.32 16.1922 4.6413 AYGAWTGG 2.36 1.07147 4.43752 TTACCTGG 1.36 0.460552 4.26622 ATBAGMDA 8.9 6.17539 4.15047 WCCGNMTC 10.8 7.79711 4.08886 KTMATTRR 7.32 4.88201 3.93431 CGVTNCGR 9.04 6.31831 3.8936 GBATBCTG 7.62 5.14232 3.78511 AGVCAYRC 8.74 6.08185 3.72827 TTGWTTTR 3.88 2.18487 3.67818 GTCRSTVD 15.74 12.1908 3.66232 CGTMACKN 5.9 3.75287 3.65989 TRCCWTDB 16.52 12.9164 3.4795 GAWRGGDB 28.72 24.1961 3.47068 GCGGKACB 5.64 3.56012 3.46615 CSGCCKCK 12.4 9.25938 3.4475 AWWCRCAH 9.14 6.46044 3.32071 GSGANKCG 12.0 8.9386 3.20589 ABSGWKAV 27.5 23.103 3.15694 TWAAAGGG 3.86 2.20493 3.0757 ATTGGAYR 2.4 1.15206 3.07349 CARAGYHS 23.58 19.4695 2.94953 THGGTMVD 16.78 13.2314 2.92045 ACCAYGTG 2.14 0.985494 2.8532 GGGKWTSG 6.42 4.2415 2.80744 GYTBCMGG 17.2 13.6377 2.74473 CCKCCCWK 17.46 13.875 2.73536 TGATNGAY 3.08 1.64899 2.69667 WGGGGGAG 6.44 4.26769 2.69119 KDRCMAAG 18.02 14.4004 2.62918 GGKHGGTG 7.5 5.15473 2.56462 WGGKWWGR 22.16 18.2346 2.46026 GTGCRMGC 3.72 2.1394 2.40468 AACTHCSA 4.78 2.968 2.25496 GGABGAGG 6.8 4.6058 2.21255 KASRMAHG 24.18 20.1771 2.11552 ACTTMCTR 3.78 2.20504 2.07428 RBCYRGAG 29.14 24.8663 2.04031 MTGCCTKN 16.26 12.8921 2.03817 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete