Motif finder

Task #3649 - c523534d

Status Start End Updated Duration Sequences Logs Task Bundle
finished 5 months ago 5 months ago 5 months ago 9 minutes (594sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
GGGHGGGG 22.66 6.86475 267.844
GGGGHGGG 21.38 6.86475 230.495
RCCAATCR 10.42 1.63603 229.223
GATTGGHY 12.3 2.70494 199.05
GGCGGRGC 15.54 4.62837 178.146
ATTGGYYR 13.42 3.578 175.066
CCAATCRV 11.94 2.93589 169.814
RGGGGHGG 26.06 11.8006 157.461
GTCACRTG 6.08 0.94264 129.643
GCGCABGC 9.12 2.41245 115.005
WTGTAGTY 6.88 1.50532 105.703
CGCABGCG 6.96 1.76264 89.8706
GGGHSGAG 17.78 8.38393 89.2353
TGTAGTYY 7.66 2.20196 84.3422
ACGTSACB 8.02 2.48522 79.4478
WTWKATAS 9.7 3.50813 76.3097
TACAWNTC 7.78 2.47046 73.8158
TNYGATTG 7.48 2.41336 68.7269
GCGGDGCB 20.98 11.6586 68.4783
ACTAYAWH 9.38 3.54333 67.5768
TATMWAWR 10.6 4.36239 65.5447
GGARGBGR 28.78 18.3599 61.8935
AAWBMRAA 23.28 13.9496 59.8307
TRCGCABG 6.56 2.12307 58.6452
GAGGBVGG 23.12 13.9644 57.4165
WGGGYGGG 13.64 6.72813 57.0456
AWRSHAAB 38.22 27.1371 54.9924
ADWTGTAG 6.76 2.34616 53.7611
TCSDMCCY 24.82 15.6013 53.5287
DRGGGGYG 23.5 14.5908 52.3276
TCACRTGR 6.44 2.23803 50.6047
RCCAATRR 9.8 4.41054 48.3063
WTRMATAV 10.46 5.00728 44.4507
CMHWTCCB 37.2 27.2501 42.9559
RRCCAATR 9.16 4.21333 41.9291
AAKATGGC 3.8 1.03205 40.2882
GGGGNCGG 10.18 5.01282 39.5566
TTGSYTDN 34.7 25.3134 39.2903
GTGKGYGK 11.98 6.32582 39.1853
CGKKRCYD 30.04 21.2173 38.4604
WCVDWTCC 23.04 15.2214 37.7632
TTYCKDTY 22.26 14.5904 37.4234
GCAVGCRC 9.68 4.77679 36.8176
GGGYGGGH 15.94 9.51673 36.1749
ACTTCCGK 4.1 1.28595 34.9837
ATMWAAGV 9.88 5.02678 34.3561
TGAYGTMA 4.06 1.281 34.1884
GGGHGTKG 11.66 6.33921 34.1408
AGGCNKRG 25.42 17.595 33.5599
RTGWCGTM 4.54 1.6049 31.7177
KGKGYGTG 11.26 6.20819 30.9082
TATKYAWW 7.16 3.31228 29.9841
GGWGGRGC 13.44 7.93254 29.9599
RGWHMGAR 30.18 22.2069 29.139
GTAGTTYN 7.18 3.36263 29.0312
GGYSGRGK 23.18 16.0882 28.5558
RASWMAGR 29.02 21.4488 26.313
TKCYRGGW 20.0 13.5837 26.0034
TTYRTTTW 9.48 5.13733 26.0025
ASNSAMAG 29.08 21.6002 25.3648
TTCRADTC 4.14 1.53582 25.2986
CGGBKDCG 13.76 8.48661 25.2559
CCGCCCCR 7.08 3.4486 25.2095
WAMKGWAD 23.9 17.06 24.752
TVGCTNHG 24.6 17.6804 24.6873
RTTYGAWH 8.3 4.35088 24.4287
AGCRAVBN 37.92 29.9762 23.2494
GGGGNAGG 12.18 7.39289 22.8196
CCAATRRG 6.18 2.93296 22.6593
CTTMCGGB 7.62 3.95465 22.4388
GGCGTGGY 4.96 2.13032 22.4209
GSKYWSGG 30.2 22.9374 22.3587
ACGCAYGC 2.02 0.492999 20.8312
AGWADSBA 22.24 16.0551 20.1243
GWRCYBRG 37.52 29.9987 20.0407
AKATGGCG 3.02 1.02155 20.0287
ATTGGHYC 6.26 3.10078 19.9699
TWKATAGV 6.3 3.13285 19.8775
GGTAACTG 1.64 0.340062 19.8329
CCATMTTB 6.14 3.04125 19.4084
GTCCCGCC 3.74 1.46077 19.3459
TCYRGGWH 22.04 15.9817 19.1089
TMVKTWDC 25.66 19.2489 18.6205
AASRMAMA 16.2 11.0591 17.9128
DTGCGCAK 5.48 2.66535 17.4645
TGVGWWHK 32.12 25.3085 17.2506
WDWCYYAG 31.88 25.1042 17.1085
NAGCRASN 35.24 28.2743 16.8235
GBTSAKTG 10.62 6.56098 16.8074
ATCACRTG 2.26 0.690142 16.2554
ARWTACNW 11.42 7.24382 16.2153
AWCRAAHB 13.58 9.02953 15.9878
GGCHRNGC 28.68 22.3741 15.372
TACCTRGC 2.2 0.687315 14.8326
GWGGGGGH 13.0 8.67338 14.4826
GSTSGGHK 25.74 19.8383 14.1892
TTAGVDWH 19.76 14.4991 14.1189
ACAGWTAC 1.74 0.466977 14.0587
CGDDMGCG 10.84 6.94326 13.9617
BCADAGCN 30.44 24.2339 13.5595
TGCWAATN 5.36 2.76319 13.3822
WCSVTMSC 21.88 16.47 13.2926
ACWDASMH 34.18 27.778 13.1996
ACAASTCC 3.38 1.43484 12.9345
TGCGCASW 4.68 2.30937 12.815
RGMCTNGR 29.72 23.6726 12.778
KAAGHRAV 25.72 20.0004 12.7513
AAAAAMAA 8.16 4.92832 12.2805
TTGCYAKG 4.1 1.9484 11.901
WGGKASGG 10.42 6.76784 11.8169
TGMGYGHG 10.16 6.56356 11.7245
TAWDTACH 6.36 3.59166 11.5589
GTTGCYAG 2.58 0.993461 11.1294
GGCWDVGR 34.24 28.1676 10.9401
GGRNCTKG 21.92 16.8315 10.5935
TSTMWKTS 21.08 16.097 10.4295
WYGAAYKM 8.82 5.59148 10.2838
TGAWTKRA 5.22 2.82017 10.1933
GVGTMACG 3.82 1.8385 9.92052
SDACGVWB 26.86 21.477 9.55806
TGTTGCCA 1.62 0.490405 9.43692
ATTTAKWW 5.18 2.84624 9.14779
RGAGBDMG 35.36 29.5233 9.06915
AATBAVHG 14.78 10.6949 9.06679
WCGYSATM 5.62 3.17967 9.0472
GMCVCCGY 13.24 9.39975 8.76974
TGSCTGNH 25.82 20.6318 8.76225
ASNCARRC 25.18 20.0601 8.64084
GTTACCTG 1.2 0.298149 8.54797
GATTGGTR 2.06 0.755659 8.52538
DNYCTRAG 32.84 27.2932 8.08412
TMNTTTBA 15.94 11.8189 8.05097
TDTGYHTG 11.92 8.34635 8.05082
TCTCGCGA 1.42 0.418958 7.77747
TAWCTGTS 2.82 1.25497 7.67738
RNGCTYCG 14.16 10.3222 7.54234
GWGAVYGR 18.58 14.2405 7.38306
DAGMGAWR 16.8 12.6599 7.35054
THSRGTWY 18.2 13.9053 7.34778
TTATAGTG 1.32 0.381789 7.03551
TTYCKTMH 18.62 14.329 6.97455
AYKSTGGG 9.7 6.58203 6.96955
ATGGCBRC 6.08 3.66115 6.94642
AYMRADTA 7.76 4.99601 6.90916
TYCYATTG 4.32 2.34354 6.71481
TTYDTTTC 9.88 6.75892 6.67426
AMTKKAWW 15.22 11.3632 6.5385
ACGCCCCB 4.76 2.68609 6.41283
CVCCTCCD 18.02 13.8694 6.37671
AASAWCDA 6.2 3.79481 6.35583
RGCRYKCG 11.0 7.7384 6.29771
GAGKABGG 7.62 4.94026 6.1815
GCYGYTRC 9.08 6.13789 6.17692
AGKRBCTG 14.68 10.9438 6.07313
RGANANGG 31.16 26.0859 5.80779
GRYGGCSG 11.0 7.78855 5.79926
GRCGGTGV 6.5 4.07303 5.7725
GCVRASGS 23.64 19.1145 5.46067
AGTGKGYR 7.74 5.11126 5.2845
HCAGDRTS 24.68 20.114 5.22192
GYCGWDCG 3.9 2.11622 5.19594
RGCAACAG 3.14 1.57214 5.18784
GGCYGYYG 11.02 7.86982 5.17647
GAVTGDRB 32.96 27.9145 5.12588
ATTYMAAR 6.76 4.33936 4.9981
GCTNCGGS 10.94 7.83157 4.88895
GTCATGTG 1.22 0.37181 4.86773
TACVRABW 11.04 7.92009 4.86193
CATMTTBV 9.72 6.80805 4.7477
TCCCSGCC 5.66 3.48633 4.70106
CMGRYWCS 20.32 16.1922 4.6413
AYGAWTGG 2.36 1.07147 4.43752
TTACCTGG 1.36 0.460552 4.26622
ATBAGMDA 8.9 6.17539 4.15047
WCCGNMTC 10.8 7.79711 4.08886
KTMATTRR 7.32 4.88201 3.93431
CGVTNCGR 9.04 6.31831 3.8936
GBATBCTG 7.62 5.14232 3.78511
AGVCAYRC 8.74 6.08185 3.72827
TTGWTTTR 3.88 2.18487 3.67818
GTCRSTVD 15.74 12.1908 3.66232
CGTMACKN 5.9 3.75287 3.65989
TRCCWTDB 16.52 12.9164 3.4795
GAWRGGDB 28.72 24.1961 3.47068
GCGGKACB 5.64 3.56012 3.46615
CSGCCKCK 12.4 9.25938 3.4475
AWWCRCAH 9.14 6.46044 3.32071
GSGANKCG 12.0 8.9386 3.20589
ABSGWKAV 27.5 23.103 3.15694
TWAAAGGG 3.86 2.20493 3.0757
ATTGGAYR 2.4 1.15206 3.07349
CARAGYHS 23.58 19.4695 2.94953
THGGTMVD 16.78 13.2314 2.92045
ACCAYGTG 2.14 0.985494 2.8532
GGGKWTSG 6.42 4.2415 2.80744
GYTBCMGG 17.2 13.6377 2.74473
CCKCCCWK 17.46 13.875 2.73536
TGATNGAY 3.08 1.64899 2.69667
WGGGGGAG 6.44 4.26769 2.69119
KDRCMAAG 18.02 14.4004 2.62918
GGKHGGTG 7.5 5.15473 2.56462
WGGKWWGR 22.16 18.2346 2.46026
GTGCRMGC 3.72 2.1394 2.40468
AACTHCSA 4.78 2.968 2.25496
GGABGAGG 6.8 4.6058 2.21255
KASRMAHG 24.18 20.1771 2.11552
ACTTMCTR 3.78 2.20504 2.07428
RBCYRGAG 29.14 24.8663 2.04031
MTGCCTKN 16.26 12.8921 2.03817

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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