Motif finder

Task #3650 - d96e8554

Status Start End Updated Duration Sequences Logs Task Bundle
finished 5 months ago 5 months ago 5 months ago 19 minutes (1172sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
GGGYGGRG 35.84 9.98605 515.216
TGATTGGY 15.78 1.65724 481.057
GATTGGYY 18.96 3.01207 433.668
GGYSGRGY 41.04 15.0341 419.533
TTWKATAS 18.08 2.95444 402.152
TATMWAAG 14.96 1.93532 393.545
GGGGYGKR 35.3 12.4509 366.272
ATTSGYTV 20.16 4.21419 361.885
CCAATCRN 22.14 5.1337 361.022
RKGGRYGG 37.64 17.0184 254.262
ATTWRCAT 8.46 0.882761 249.345
ATMWAAGS 16.56 4.33606 226.456
ACAGTTAC 5.26 0.282368 220.877
AGTTACCT 5.84 0.415945 212.7
TWKATASD 20.96 7.32017 197.862
GCGKRGCY 23.94 9.25608 194.756
GGTAACTG 5.58 0.442172 190.721
GTTACCTR 6.4 0.648379 189.17
TTWGCATN 11.78 2.62643 187.031
TACCTGGC 6.18 0.640618 179.484
CAATCANR 16.5 5.4897 161.971
GGGASGRG 19.5 7.59029 150.605
TTATMGTG 5.6 0.66352 147.038
TAACTGTG 4.82 0.462776 144.875
GGGNNTGG 35.46 19.9526 133.262
TTACCTRG 6.46 1.04612 133.255
GGCGTGKC 8.86 2.05148 131.073
GTTGCCAG 5.18 0.656364 128.542
CRVMCCCD 43.1 26.7221 127.088
RCCRATVS 19.82 8.63979 122.312
TGTTGCCA 4.86 0.606597 121.369
ACCTGGCA 5.18 0.73816 117.021
WGGGHGGR 37.12 22.2867 114.262
GAGGHGKG 23.06 11.3695 110.003
TTGGYTRN 21.46 10.2379 109.328
TMATTDGC 8.56 2.27043 106.764
TATMGTGR 6.1 1.18591 105.06
GCAACAGS 7.42 1.81797 100.65
TTGCCAGG 5.58 1.0428 99.1188
ATAGTGRG 5.66 1.08434 98.187
AGGYRKGB 36.06 22.3252 97.482
ATTNNCAT 12.28 4.51355 97.4773
RHGGGGCG 17.72 8.04546 97.3973
ATTGGHCN 16.02 6.91475 96.7482
ACTGTGGG 5.88 1.23242 93.1206
TATNNAAA 14.46 6.02409 92.416
KGCAACAG 6.66 1.60771 90.8308
CHAATKAR 12.44 4.79226 90.6387
TGCRHAYG 8.02 2.3039 88.9441
RRCCRATR 14.54 6.20291 88.3991
AACTGTGG 5.1 0.969996 88.1143
WVGCHCCG 20.48 10.4387 86.5553
TAWAAGSR 15.68 7.0291 86.5288
GGABGRGB 33.34 20.7267 85.4732
GGGHWSGG 21.5 11.4865 80.1969
GCTGCTTR 7.3 2.11867 78.7364
WTRMATAV 13.12 5.66906 75.9801
GGGGAGGR 13.8 6.15892 74.9302
AACRGCCA 5.3 1.21837 74.5101
AATBAVRW 23.5 13.3199 74.3459
GAGKSMGG 19.42 10.2681 72.6588
AGCCAGGT 5.0 1.1195 71.972
ATWYRAAN 17.64 8.99255 71.6812
CAGGTAKG 4.66 1.09396 62.6771
TCVMDYCC 35.82 24.4117 62.3824
AGCAMSAG 9.94 4.04358 62.2241
GGCYGTTG 4.9 1.21944 61.63
TAGTGRGY 6.58 2.07688 61.3469
TGASWYAC 7.88 2.84071 60.1322
CCGYMCCR 11.26 4.98994 59.5393
TYKGTYYW 26.8 16.9365 58.2793
AVMGNAAG 26.34 16.5639 58.114
AMGCARSH 24.6 15.2124 56.7529
GTYCBGCC 10.54 4.65182 55.4673
TCWWRCTC 10.38 4.55711 55.1367
GTSACGTV 6.3 2.08596 53.7631
AAAGGGRC 7.28 2.68407 52.3978
ARAYRVAA 19.94 11.7497 51.7908
ACGTSACB 5.88 1.90004 51.6456
AYAGCCAG 6.24 2.10439 51.4577
AWCWRVAW 29.32 19.5849 50.9714
AGGAKRGG 14.92 7.94481 50.6926
AABAAAVS 22.72 14.0844 50.2593
GCGCABGC 4.96 1.449 49.7025
WGCATAMC 4.42 1.18709 49.1598
TRAWTRVA 15.88 8.74554 49.0906
GGWNHGAR 38.46 27.9457 48.0349
TTYRWATB 12.96 6.65016 47.5797
GAGCATAC 2.12 0.274185 46.3912
RRAGGCVG 25.66 16.9245 44.6384
VAATKAGV 15.54 8.74496 44.1752
MGDAMGHR 36.02 26.1337 43.4252
TRKGCSTR 14.82 8.24482 43.2489
AKCAAGST 6.46 2.43928 43.1715
TADGCTCC 6.66 2.59265 42.0244
ATGCWAAV 6.08 2.24328 42.011
GBATYCTG 8.44 3.74258 41.6129
KGGGVAGG 21.46 13.6699 40.9536
TYGYTHTB 24.82 16.5337 40.339
CTGTGGGG 5.96 2.22146 40.1385
AGGCCTAY 4.3 1.2892 40.1046
CCAGGTAK 4.24 1.25839 40.0814
RRGCYDAG 28.62 19.8662 39.6664
ASRCACRC 7.9 3.47514 39.0668
AGYYYAGA 11.36 5.91187 38.3541
RTTWATTV 8.14 3.66574 38.1796
GAGMBASG 17.0 10.2336 38.1729
GCAVGHAS 18.02 11.0611 37.9986
ACAGGATC 2.42 0.459271 37.1151
DGTGSGYG 15.54 9.1547 36.9522
GATYGGYR 6.92 2.91151 36.8922
GTGKRGYY 22.12 14.5742 36.0734
CCTGGCTR 6.96 2.98391 35.474
RGCGMRCG 6.76 2.86132 35.2807
MCRATARR 11.8 6.39627 35.0671
TGYTRATK 7.5 3.35303 35.0384
CRWRDCCR 23.42 15.8112 34.3328
YGCNTGCS 13.34 7.61922 33.9877
ATAAACGT 1.76 0.250475 33.8787
GGYWSGGS 21.54 14.2742 33.6126
AAMCRTRT 4.76 1.68881 33.4556
GGDGCTGC 10.56 5.56473 33.3789
AAAAGGGG 5.38 2.06471 33.1189
RGAWMBGD 37.06 28.0781 33.0902
TCCKRTYG 7.02 3.10507 33.0856
GAHNSGAH 27.72 19.6657 32.86
GAAGGATC 2.56 0.568762 32.7535
ACCRGTTC 2.98 0.767961 32.1941
THTCTTRC 7.94 3.76102 32.098
CGMWCSGS 7.92 3.75652 31.8661
ARYGWRTS 14.1 8.34293 31.6998
KBGCTGCK 17.94 11.4246 31.6892
TGGTGCTG 3.76 1.18036 31.2803
AAWCAARS 9.74 5.07363 31.1581
AWKAGRDA 22.0 14.8601 31.131
TATKYATD 6.06 2.55186 31.0145
GADAKGBR 31.94 23.6982 30.1076
AGRGGCGT 5.22 2.06338 29.7579
GACCMCGH 6.26 2.72645 29.656
AMTYMSRG 24.2 16.9321 29.003
GGTTATGC 1.84 0.325133 28.4968
AAGGATCC 2.58 0.637529 28.4744
WGAGBKHG 32.14 24.056 28.3798
RSTRATTG 7.84 3.88475 27.4377
TGAYGTMA 3.56 1.15551 27.3558
GTGYGCAK 4.52 1.70949 27.2453
GCSKGACY 10.04 5.5242 26.5712
TATYGSGA 3.44 1.10743 26.5553
TGAGTCAG 2.64 0.696958 26.4879
ACVCSCAC 7.34 3.59579 26.0109
GGCCTAGG 3.28 1.03705 25.7952
TGGGSTSG 8.86 4.69456 25.7401
TATMGGCC 2.72 0.757351 25.2374
GGSCAAGC 5.12 2.1445 25.0927
KAACDAYR 9.58 5.26185 25.0398
ATATMGGS 3.74 1.31748 24.7189
ADGGAMTK 12.78 7.76921 24.3195
ATCCGGGT 1.7 0.321992 23.5695
GKTCKGGG 6.76 3.2963 23.5452
CGGATYGG 2.62 0.737787 23.5216
THATTRGK 9.3 5.14338 23.3396
AAGGGRCT 5.62 2.52986 23.335
ATMAAAAC 3.26 1.08089 23.2757
TRYSTSAC 10.86 6.33741 23.2041
KAAGMDAG 13.6 8.50798 23.0776
TRCBTWGH 16.92 11.2317 23.0697
AGMGAGDA 10.86 6.34861 23.0181
AKKSGSAG 22.66 16.1427 22.998
GCGMDCGD 7.7 3.98787 22.9535
ATCSTTCT 3.08 0.993732 22.7499
GGTRTGBC 6.52 3.17039 22.5784
TCASRTRA 6.9 3.43666 22.5574
GWGYGMGM 12.12 7.37515 22.3677
AGTTCTGG 3.04 0.98059 22.3514
AAGKSAVR 24.74 18.0546 22.1498
TCTMTCTC 6.16 2.94808 21.9473
AYATGYAA 2.84 0.882515 21.8996
TAAMCGTG 1.98 0.460227 21.8604
CGRMGCKS 13.42 8.47374 21.5129
ACTGGTGC 2.4 0.669613 21.1685
AGGCAVRA 9.44 5.36978 21.1592
GGAAKKGG 9.58 5.49327 20.8657
ACGYRTGC 2.68 0.823766 20.6187
DARCBCAG 19.92 14.0163 20.3353
TRGNATTH 13.9 8.96573 20.1323
TGYGCAGA 3.44 1.26113 20.08
TCCTAGGC 3.08 1.06391 19.664
ASTTBAAA 6.0 2.94074 19.4741
GCTSGGVK 18.98 13.301 19.3226
TAMATASB 5.58 2.66204 19.2062
KASRNAWG 35.16 27.8962 19.1596
GTCKAARC 2.98 1.02727 18.8292
TRCWAAYM 8.84 5.06099 18.6043
CGWGBKCG 6.32 3.20421 18.5968
GCGMGYGC 4.34 1.86364 18.4936
AACTGGTG 2.58 0.814816 18.466
TGKCTRRR 18.26 12.7627 18.4623
KYGCAKCG 4.96 2.27793 18.298
AGGATCCT 2.58 0.831515 17.6817
GDCGSTGC 6.34 3.26149 17.6657
AAACKGAT 2.12 0.593481 17.5791
CGRKYCGR 6.04 3.05698 17.473
AGABAGAK 9.78 5.86511 17.315
AWMGMAAM 10.34 6.31199 17.2071
AATYVGTT 3.56 1.41684 17.0907
AACGAYRC 1.58 0.353688 16.718
GGGCSGGY 8.86 5.19781 16.5734
TTCTGCAC 2.48 0.805977 16.3527
ACCACGCC 2.9 1.0439 16.2959
TYKGYYYC 32.9 26.1734 16.1645
ARRCTMCA 10.64 6.6377 15.9381
RTAMGCAS 4.78 2.25867 15.6789
WGSGAKWG 17.18 12.1013 15.645
TCTCGCGA 1.46 0.318652 15.4298
CRGRACYD 19.92 14.5049 15.3883
CGTCAYSR 4.0 1.77546 14.6837
GKWCGRWN 12.88 8.56988 14.5304
AGRKGAGG 12.4 8.18503 14.3854
TWCBTGCY 11.94 7.80809 14.369
ATTYTGTC 2.64 0.9459 14.2289
WGTTGCWR 8.44 5.02348 14.1714
ATCABATK 3.9 1.72855 14.1651
ATDCVCTA 4.14 1.88995 14.085
TGCMGAAG 3.56 1.51195 14.0705
GGSWKAGV 30.94 24.6435 13.963
CAAGAKAG 4.38 2.08334 13.2755
AAACCRTA 1.54 0.385366 13.2098
TYCGVCTC 7.52 4.37512 13.1963
GTCGTTCK 1.16 0.223621 13.0096
GGRRYWHG 32.22 25.9773 12.9359
WGACCMCG 4.52 2.19912 12.7996
TATBTTRA 3.4 1.45586 12.6887
ACAWASRM 9.38 5.8653 12.6654
TGCGMGCG 1.94 0.594804 12.6166
RTCTCRCR 5.58 2.95948 12.6024
CKMGCGAB 5.18 2.67499 12.5308
ACCATATA 1.3 0.292349 12.1404
CYAAYGGV 8.7 5.36594 12.0884
GSGGYCGK 6.62 3.75947 12.0452
TTGAWTGH 4.34 2.11019 11.966
GTGGGGWG 6.36 3.58298 11.7114
HYAGRCAV 25.68 20.1154 11.5826
RCYKAGYD 24.52 19.0771 11.4359
TCCGGGTB 3.96 1.87859 11.273
ACGCTGCA 1.54 0.416486 11.2695
AGTGCATA 1.08 0.212061 11.1744
AAKATGGC 2.5 0.945002 11.1482
AAYSGDAA 6.24 3.53693 10.9396
GCCKCTRC 7.24 4.30287 10.8995
AGCGWCGK 1.9 0.609318 10.8906
TCMARGYY 15.5 11.1431 10.7296
TTCYRRGY 16.28 11.8289 10.6406
AATCATRT 1.78 0.551018 10.6083
ATGYTCCT 3.74 1.76514 10.3819
GAWSKRGR 25.52 20.1358 10.3376
AATRRAYT 5.54 3.07014 9.93229
AYGGTTWS 3.52 1.63562 9.90418
GASAARGR 14.06 10.0 9.78263
ACARWRTG 6.66 3.92689 9.77368
AAGCTCTC 3.32 1.50922 9.71944
GCTWCSKK 11.48 7.81993 9.71657
ARCRWVCA 12.64 8.79637 9.71378
GGWKSGAY 10.0 6.59577 9.69213
WAMTGTAD 5.88 3.34739 9.52994
AYCAYGTG 3.58 1.69389 9.45583
WTACTCTC 2.84 1.20692 9.43501
TTTRAARG 6.72 4.01438 9.12996
GTTGCWRV 10.08 6.7446 8.70699
ADAAKRVA 31.82 26.2383 8.65966
TACTCTCA 1.62 0.506583 8.63647
GAGGGGSC 7.4 4.5803 8.63334
CKTMCGGV 6.8 4.11152 8.59932
ARGCCACR 6.28 3.71147 8.55503
TAAACTGA 1.76 0.586553 8.45313
TCCCMGMM 14.02 10.1168 8.32242
CGRCSGCG 3.52 1.69982 8.31472
TSGAAACS 3.16 1.45752 8.27656
ACACCYGG 3.42 1.63755 8.16635
RWYCCAGR 16.72 12.4943 8.14372
KWWYWAAG 19.28 14.785 8.02696
GAGTYBAG 6.1 3.61525 7.88874
AAGMKAGK 8.6 5.61205 7.72602
RAASTSAM 11.82 8.29355 7.72313
AACRATAR 2.44 1.01074 7.68951
RGACAARG 5.6 3.24705 7.65245
YCGGRTTS 5.66 3.29443 7.62506
RCSGRCCG 4.36 2.3356 7.42845
TYGAAHTH 5.96 3.54291 7.33356
TGRDCTAY 6.94 4.31132 7.2997
ATTSGTRR 5.1 2.89473 7.21728
AGMKARGG 11.42 8.00497 7.20572
GCAGAAGG 3.46 1.71081 7.09091
GGCSGGYC 6.68 4.12147 7.08184
GBCTRGAB 17.96 13.7442 6.92962
THGRYCAS 14.5 10.6946 6.86038
AVGKWMGW 17.26 13.1367 6.79784
GTGSVCTG 8.3 5.44693 6.7514
TGABYGAY 5.34 3.10877 6.67548
ATGACGWM 1.78 0.642018 6.62091
YGGYCGAV 4.98 2.84023 6.60419
YAGRGGCR 12.64 9.12894 6.42114
WGKAKSYG 24.38 19.6625 6.33795
AGCAACTA 1.38 0.426621 6.32819
TTGGBMGA 6.7 4.19315 6.30173
GTWTCCRK 4.76 2.69807 6.2052
GTMHTTWG 6.82 4.29607 6.19989
TGGYTANY 9.62 6.58559 6.19718
RSGCAGAG 7.78 5.07324 6.14178
AYTACRDW 6.34 3.92027 6.13571
ACMTGAST 3.38 1.70686 5.92866
RRRKACMG 21.02 16.6612 5.79469
ATYGYAGA 2.92 1.39709 5.72499
ATTSGATR 1.84 0.702865 5.66749
GGMSAGGC 9.6 6.62789 5.56512
AKATSGCK 4.14 2.2733 5.55457
AATAGAGY 2.26 0.967274 5.53857
GCTMAGDB 15.5 11.7321 5.53796
GCAACTAG 1.32 0.413472 5.41781
TRCTTGGC 3.04 1.49826 5.28404
GGAAGTVC 3.98 2.17113 5.26598
CTGGRHBG 21.76 17.4349 5.1375
AYAWCAAA 2.86 1.38137 5.11643
AATTCVTM 3.44 1.78807 5.10539
CSATMBTK 9.18 6.3248 5.04653
ASGTBACA 4.62 2.66233 5.02327
TACRGTHN 6.22 3.91096 4.9514
TSRCTYAG 6.6 4.2186 4.89751
TGDAACRA 3.66 1.96011 4.83365
ACADAAYA 4.34 2.46312 4.82311
CSTGMSTR 11.58 8.39605 4.75348
WAGGWKAG 9.4 6.54048 4.7233
TCCTTCKG 4.1 2.28959 4.72215
TTAGGGNA 3.76 2.04265 4.64932
AGGGYWRG 11.72 8.53163 4.62002
KGTGGGGR 10.44 7.43368 4.60795
GRAKGRAG 15.48 11.8392 4.5586
GRTAGGCY 3.92 2.17228 4.4307
GATYGYAG 2.98 1.49547 4.40433
TGCCTGGW 3.32 1.73831 4.36415
TGRAGMSA 10.32 7.36025 4.32996
CGGWGBCG 4.86 2.89518 4.23242
TWATATGG 1.68 0.647261 4.23233
GTAKGYGD 5.82 3.64912 4.19418
CRTWCTTR 3.72 2.03962 4.15727
GAHAGADM 13.52 10.1565 4.15136
KCGTCRCK 3.22 1.6785 4.12301
TSGCTGBC 7.52 5.03561 4.05914
AARCSAAT 3.08 1.58278 4.03983
ACGTSATS 2.24 1.00778 4.02141
TTAWHGGC 5.56 3.45604 4.01987
TWCAASTC 2.84 1.42011 3.90339
CCGHAGCS 4.74 2.82655 3.86528
ACNCACYC 7.38 4.94355 3.79392
AGTGSGCT 2.98 1.52468 3.76929
AKGAATKB 8.66 6.01998 3.67272
GSACWBGG 10.54 7.61974 3.66571
AVWWCAAS 12.52 9.34048 3.64562
RGRAAAKG 14.42 11.0224 3.59729
AWGTRTST 3.9 2.20581 3.57418
RTGCTGGG 4.16 2.40346 3.54258
CTCATCTR 2.22 1.01474 3.4813
GYAKCGMK 5.82 3.70317 3.47329
ATTGTGCC 1.58 0.611583 3.36937
GCDAGRGG 9.66 6.90163 3.33313
AAAGACMA 3.12 1.64708 3.30482
GCKDCGGC 5.6 3.54126 3.29321
GSTYGCTR 6.08 3.92839 3.26208
YCCGRCCS 6.92 4.6121 3.25833
CYTGCGCR 3.8 2.15233 3.20481
CACSGCCS 4.24 2.48985 3.12928
GCYKCGCK 7.18 4.83741 3.12899
ARCATCWR 5.78 3.69836 3.11982
CAACTMGG 1.86 0.7935 3.11148
GTRASTRD 11.22 8.27577 3.06216
ACCVWRHC 17.4 13.7829 2.98656
MGACYCGV 6.52 4.31421 2.91298
AGGRGVCA 11.92 8.91816 2.79801
TCTCCTAG 2.74 1.40227 2.75951
ARTTYKYA 8.74 6.18679 2.68059
AAWAMGAA 3.94 2.28972 2.67237
AATGGGGA 2.06 0.940477 2.63918
TGCYGTTD 4.48 2.71168 2.56411
GTCGTYAM 1.28 0.456555 2.55426
TYGCTARG 2.68 1.37137 2.51353
KAATTTVD 7.64 5.27705 2.50815
ASTGCGCA 1.44 0.555018 2.39372
AAATRRAB 8.96 6.40461 2.38717
WMGGYSGG 12.12 9.14551 2.38206
TCRTATYG 1.22 0.427041 2.36038
TARCATMW 3.5 1.97864 2.32759
TABWTAAY 4.1 2.43862 2.25135
TCKHTTCG 2.6 1.32801 2.23199

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

Motif search tool