Task #3650 - d96e8554 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 19 minutes (1172sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) GGGYGGRG 35.84 9.98605 515.216 TGATTGGY 15.78 1.65724 481.057 GATTGGYY 18.96 3.01207 433.668 GGYSGRGY 41.04 15.0341 419.533 TTWKATAS 18.08 2.95444 402.152 TATMWAAG 14.96 1.93532 393.545 GGGGYGKR 35.3 12.4509 366.272 ATTSGYTV 20.16 4.21419 361.885 CCAATCRN 22.14 5.1337 361.022 RKGGRYGG 37.64 17.0184 254.262 ATTWRCAT 8.46 0.882761 249.345 ATMWAAGS 16.56 4.33606 226.456 ACAGTTAC 5.26 0.282368 220.877 AGTTACCT 5.84 0.415945 212.7 TWKATASD 20.96 7.32017 197.862 GCGKRGCY 23.94 9.25608 194.756 GGTAACTG 5.58 0.442172 190.721 GTTACCTR 6.4 0.648379 189.17 TTWGCATN 11.78 2.62643 187.031 TACCTGGC 6.18 0.640618 179.484 CAATCANR 16.5 5.4897 161.971 GGGASGRG 19.5 7.59029 150.605 TTATMGTG 5.6 0.66352 147.038 TAACTGTG 4.82 0.462776 144.875 GGGNNTGG 35.46 19.9526 133.262 TTACCTRG 6.46 1.04612 133.255 GGCGTGKC 8.86 2.05148 131.073 GTTGCCAG 5.18 0.656364 128.542 CRVMCCCD 43.1 26.7221 127.088 RCCRATVS 19.82 8.63979 122.312 TGTTGCCA 4.86 0.606597 121.369 ACCTGGCA 5.18 0.73816 117.021 WGGGHGGR 37.12 22.2867 114.262 GAGGHGKG 23.06 11.3695 110.003 TTGGYTRN 21.46 10.2379 109.328 TMATTDGC 8.56 2.27043 106.764 TATMGTGR 6.1 1.18591 105.06 GCAACAGS 7.42 1.81797 100.65 TTGCCAGG 5.58 1.0428 99.1188 ATAGTGRG 5.66 1.08434 98.187 AGGYRKGB 36.06 22.3252 97.482 ATTNNCAT 12.28 4.51355 97.4773 RHGGGGCG 17.72 8.04546 97.3973 ATTGGHCN 16.02 6.91475 96.7482 ACTGTGGG 5.88 1.23242 93.1206 TATNNAAA 14.46 6.02409 92.416 KGCAACAG 6.66 1.60771 90.8308 CHAATKAR 12.44 4.79226 90.6387 TGCRHAYG 8.02 2.3039 88.9441 RRCCRATR 14.54 6.20291 88.3991 AACTGTGG 5.1 0.969996 88.1143 WVGCHCCG 20.48 10.4387 86.5553 TAWAAGSR 15.68 7.0291 86.5288 GGABGRGB 33.34 20.7267 85.4732 GGGHWSGG 21.5 11.4865 80.1969 GCTGCTTR 7.3 2.11867 78.7364 WTRMATAV 13.12 5.66906 75.9801 GGGGAGGR 13.8 6.15892 74.9302 AACRGCCA 5.3 1.21837 74.5101 AATBAVRW 23.5 13.3199 74.3459 GAGKSMGG 19.42 10.2681 72.6588 AGCCAGGT 5.0 1.1195 71.972 ATWYRAAN 17.64 8.99255 71.6812 CAGGTAKG 4.66 1.09396 62.6771 TCVMDYCC 35.82 24.4117 62.3824 AGCAMSAG 9.94 4.04358 62.2241 GGCYGTTG 4.9 1.21944 61.63 TAGTGRGY 6.58 2.07688 61.3469 TGASWYAC 7.88 2.84071 60.1322 CCGYMCCR 11.26 4.98994 59.5393 TYKGTYYW 26.8 16.9365 58.2793 AVMGNAAG 26.34 16.5639 58.114 AMGCARSH 24.6 15.2124 56.7529 GTYCBGCC 10.54 4.65182 55.4673 TCWWRCTC 10.38 4.55711 55.1367 GTSACGTV 6.3 2.08596 53.7631 AAAGGGRC 7.28 2.68407 52.3978 ARAYRVAA 19.94 11.7497 51.7908 ACGTSACB 5.88 1.90004 51.6456 AYAGCCAG 6.24 2.10439 51.4577 AWCWRVAW 29.32 19.5849 50.9714 AGGAKRGG 14.92 7.94481 50.6926 AABAAAVS 22.72 14.0844 50.2593 GCGCABGC 4.96 1.449 49.7025 WGCATAMC 4.42 1.18709 49.1598 TRAWTRVA 15.88 8.74554 49.0906 GGWNHGAR 38.46 27.9457 48.0349 TTYRWATB 12.96 6.65016 47.5797 GAGCATAC 2.12 0.274185 46.3912 RRAGGCVG 25.66 16.9245 44.6384 VAATKAGV 15.54 8.74496 44.1752 MGDAMGHR 36.02 26.1337 43.4252 TRKGCSTR 14.82 8.24482 43.2489 AKCAAGST 6.46 2.43928 43.1715 TADGCTCC 6.66 2.59265 42.0244 ATGCWAAV 6.08 2.24328 42.011 GBATYCTG 8.44 3.74258 41.6129 KGGGVAGG 21.46 13.6699 40.9536 TYGYTHTB 24.82 16.5337 40.339 CTGTGGGG 5.96 2.22146 40.1385 AGGCCTAY 4.3 1.2892 40.1046 CCAGGTAK 4.24 1.25839 40.0814 RRGCYDAG 28.62 19.8662 39.6664 ASRCACRC 7.9 3.47514 39.0668 AGYYYAGA 11.36 5.91187 38.3541 RTTWATTV 8.14 3.66574 38.1796 GAGMBASG 17.0 10.2336 38.1729 GCAVGHAS 18.02 11.0611 37.9986 ACAGGATC 2.42 0.459271 37.1151 DGTGSGYG 15.54 9.1547 36.9522 GATYGGYR 6.92 2.91151 36.8922 GTGKRGYY 22.12 14.5742 36.0734 CCTGGCTR 6.96 2.98391 35.474 RGCGMRCG 6.76 2.86132 35.2807 MCRATARR 11.8 6.39627 35.0671 TGYTRATK 7.5 3.35303 35.0384 CRWRDCCR 23.42 15.8112 34.3328 YGCNTGCS 13.34 7.61922 33.9877 ATAAACGT 1.76 0.250475 33.8787 GGYWSGGS 21.54 14.2742 33.6126 AAMCRTRT 4.76 1.68881 33.4556 GGDGCTGC 10.56 5.56473 33.3789 AAAAGGGG 5.38 2.06471 33.1189 RGAWMBGD 37.06 28.0781 33.0902 TCCKRTYG 7.02 3.10507 33.0856 GAHNSGAH 27.72 19.6657 32.86 GAAGGATC 2.56 0.568762 32.7535 ACCRGTTC 2.98 0.767961 32.1941 THTCTTRC 7.94 3.76102 32.098 CGMWCSGS 7.92 3.75652 31.8661 ARYGWRTS 14.1 8.34293 31.6998 KBGCTGCK 17.94 11.4246 31.6892 TGGTGCTG 3.76 1.18036 31.2803 AAWCAARS 9.74 5.07363 31.1581 AWKAGRDA 22.0 14.8601 31.131 TATKYATD 6.06 2.55186 31.0145 GADAKGBR 31.94 23.6982 30.1076 AGRGGCGT 5.22 2.06338 29.7579 GACCMCGH 6.26 2.72645 29.656 AMTYMSRG 24.2 16.9321 29.003 GGTTATGC 1.84 0.325133 28.4968 AAGGATCC 2.58 0.637529 28.4744 WGAGBKHG 32.14 24.056 28.3798 RSTRATTG 7.84 3.88475 27.4377 TGAYGTMA 3.56 1.15551 27.3558 GTGYGCAK 4.52 1.70949 27.2453 GCSKGACY 10.04 5.5242 26.5712 TATYGSGA 3.44 1.10743 26.5553 TGAGTCAG 2.64 0.696958 26.4879 ACVCSCAC 7.34 3.59579 26.0109 GGCCTAGG 3.28 1.03705 25.7952 TGGGSTSG 8.86 4.69456 25.7401 TATMGGCC 2.72 0.757351 25.2374 GGSCAAGC 5.12 2.1445 25.0927 KAACDAYR 9.58 5.26185 25.0398 ATATMGGS 3.74 1.31748 24.7189 ADGGAMTK 12.78 7.76921 24.3195 ATCCGGGT 1.7 0.321992 23.5695 GKTCKGGG 6.76 3.2963 23.5452 CGGATYGG 2.62 0.737787 23.5216 THATTRGK 9.3 5.14338 23.3396 AAGGGRCT 5.62 2.52986 23.335 ATMAAAAC 3.26 1.08089 23.2757 TRYSTSAC 10.86 6.33741 23.2041 KAAGMDAG 13.6 8.50798 23.0776 TRCBTWGH 16.92 11.2317 23.0697 AGMGAGDA 10.86 6.34861 23.0181 AKKSGSAG 22.66 16.1427 22.998 GCGMDCGD 7.7 3.98787 22.9535 ATCSTTCT 3.08 0.993732 22.7499 GGTRTGBC 6.52 3.17039 22.5784 TCASRTRA 6.9 3.43666 22.5574 GWGYGMGM 12.12 7.37515 22.3677 AGTTCTGG 3.04 0.98059 22.3514 AAGKSAVR 24.74 18.0546 22.1498 TCTMTCTC 6.16 2.94808 21.9473 AYATGYAA 2.84 0.882515 21.8996 TAAMCGTG 1.98 0.460227 21.8604 CGRMGCKS 13.42 8.47374 21.5129 ACTGGTGC 2.4 0.669613 21.1685 AGGCAVRA 9.44 5.36978 21.1592 GGAAKKGG 9.58 5.49327 20.8657 ACGYRTGC 2.68 0.823766 20.6187 DARCBCAG 19.92 14.0163 20.3353 TRGNATTH 13.9 8.96573 20.1323 TGYGCAGA 3.44 1.26113 20.08 TCCTAGGC 3.08 1.06391 19.664 ASTTBAAA 6.0 2.94074 19.4741 GCTSGGVK 18.98 13.301 19.3226 TAMATASB 5.58 2.66204 19.2062 KASRNAWG 35.16 27.8962 19.1596 GTCKAARC 2.98 1.02727 18.8292 TRCWAAYM 8.84 5.06099 18.6043 CGWGBKCG 6.32 3.20421 18.5968 GCGMGYGC 4.34 1.86364 18.4936 AACTGGTG 2.58 0.814816 18.466 TGKCTRRR 18.26 12.7627 18.4623 KYGCAKCG 4.96 2.27793 18.298 AGGATCCT 2.58 0.831515 17.6817 GDCGSTGC 6.34 3.26149 17.6657 AAACKGAT 2.12 0.593481 17.5791 CGRKYCGR 6.04 3.05698 17.473 AGABAGAK 9.78 5.86511 17.315 AWMGMAAM 10.34 6.31199 17.2071 AATYVGTT 3.56 1.41684 17.0907 AACGAYRC 1.58 0.353688 16.718 GGGCSGGY 8.86 5.19781 16.5734 TTCTGCAC 2.48 0.805977 16.3527 ACCACGCC 2.9 1.0439 16.2959 TYKGYYYC 32.9 26.1734 16.1645 ARRCTMCA 10.64 6.6377 15.9381 RTAMGCAS 4.78 2.25867 15.6789 WGSGAKWG 17.18 12.1013 15.645 TCTCGCGA 1.46 0.318652 15.4298 CRGRACYD 19.92 14.5049 15.3883 CGTCAYSR 4.0 1.77546 14.6837 GKWCGRWN 12.88 8.56988 14.5304 AGRKGAGG 12.4 8.18503 14.3854 TWCBTGCY 11.94 7.80809 14.369 ATTYTGTC 2.64 0.9459 14.2289 WGTTGCWR 8.44 5.02348 14.1714 ATCABATK 3.9 1.72855 14.1651 ATDCVCTA 4.14 1.88995 14.085 TGCMGAAG 3.56 1.51195 14.0705 GGSWKAGV 30.94 24.6435 13.963 CAAGAKAG 4.38 2.08334 13.2755 AAACCRTA 1.54 0.385366 13.2098 TYCGVCTC 7.52 4.37512 13.1963 GTCGTTCK 1.16 0.223621 13.0096 GGRRYWHG 32.22 25.9773 12.9359 WGACCMCG 4.52 2.19912 12.7996 TATBTTRA 3.4 1.45586 12.6887 ACAWASRM 9.38 5.8653 12.6654 TGCGMGCG 1.94 0.594804 12.6166 RTCTCRCR 5.58 2.95948 12.6024 CKMGCGAB 5.18 2.67499 12.5308 ACCATATA 1.3 0.292349 12.1404 CYAAYGGV 8.7 5.36594 12.0884 GSGGYCGK 6.62 3.75947 12.0452 TTGAWTGH 4.34 2.11019 11.966 GTGGGGWG 6.36 3.58298 11.7114 HYAGRCAV 25.68 20.1154 11.5826 RCYKAGYD 24.52 19.0771 11.4359 TCCGGGTB 3.96 1.87859 11.273 ACGCTGCA 1.54 0.416486 11.2695 AGTGCATA 1.08 0.212061 11.1744 AAKATGGC 2.5 0.945002 11.1482 AAYSGDAA 6.24 3.53693 10.9396 GCCKCTRC 7.24 4.30287 10.8995 AGCGWCGK 1.9 0.609318 10.8906 TCMARGYY 15.5 11.1431 10.7296 TTCYRRGY 16.28 11.8289 10.6406 AATCATRT 1.78 0.551018 10.6083 ATGYTCCT 3.74 1.76514 10.3819 GAWSKRGR 25.52 20.1358 10.3376 AATRRAYT 5.54 3.07014 9.93229 AYGGTTWS 3.52 1.63562 9.90418 GASAARGR 14.06 10.0 9.78263 ACARWRTG 6.66 3.92689 9.77368 AAGCTCTC 3.32 1.50922 9.71944 GCTWCSKK 11.48 7.81993 9.71657 ARCRWVCA 12.64 8.79637 9.71378 GGWKSGAY 10.0 6.59577 9.69213 WAMTGTAD 5.88 3.34739 9.52994 AYCAYGTG 3.58 1.69389 9.45583 WTACTCTC 2.84 1.20692 9.43501 TTTRAARG 6.72 4.01438 9.12996 GTTGCWRV 10.08 6.7446 8.70699 ADAAKRVA 31.82 26.2383 8.65966 TACTCTCA 1.62 0.506583 8.63647 GAGGGGSC 7.4 4.5803 8.63334 CKTMCGGV 6.8 4.11152 8.59932 ARGCCACR 6.28 3.71147 8.55503 TAAACTGA 1.76 0.586553 8.45313 TCCCMGMM 14.02 10.1168 8.32242 CGRCSGCG 3.52 1.69982 8.31472 TSGAAACS 3.16 1.45752 8.27656 ACACCYGG 3.42 1.63755 8.16635 RWYCCAGR 16.72 12.4943 8.14372 KWWYWAAG 19.28 14.785 8.02696 GAGTYBAG 6.1 3.61525 7.88874 AAGMKAGK 8.6 5.61205 7.72602 RAASTSAM 11.82 8.29355 7.72313 AACRATAR 2.44 1.01074 7.68951 RGACAARG 5.6 3.24705 7.65245 YCGGRTTS 5.66 3.29443 7.62506 RCSGRCCG 4.36 2.3356 7.42845 TYGAAHTH 5.96 3.54291 7.33356 TGRDCTAY 6.94 4.31132 7.2997 ATTSGTRR 5.1 2.89473 7.21728 AGMKARGG 11.42 8.00497 7.20572 GCAGAAGG 3.46 1.71081 7.09091 GGCSGGYC 6.68 4.12147 7.08184 GBCTRGAB 17.96 13.7442 6.92962 THGRYCAS 14.5 10.6946 6.86038 AVGKWMGW 17.26 13.1367 6.79784 GTGSVCTG 8.3 5.44693 6.7514 TGABYGAY 5.34 3.10877 6.67548 ATGACGWM 1.78 0.642018 6.62091 YGGYCGAV 4.98 2.84023 6.60419 YAGRGGCR 12.64 9.12894 6.42114 WGKAKSYG 24.38 19.6625 6.33795 AGCAACTA 1.38 0.426621 6.32819 TTGGBMGA 6.7 4.19315 6.30173 GTWTCCRK 4.76 2.69807 6.2052 GTMHTTWG 6.82 4.29607 6.19989 TGGYTANY 9.62 6.58559 6.19718 RSGCAGAG 7.78 5.07324 6.14178 AYTACRDW 6.34 3.92027 6.13571 ACMTGAST 3.38 1.70686 5.92866 RRRKACMG 21.02 16.6612 5.79469 ATYGYAGA 2.92 1.39709 5.72499 ATTSGATR 1.84 0.702865 5.66749 GGMSAGGC 9.6 6.62789 5.56512 AKATSGCK 4.14 2.2733 5.55457 AATAGAGY 2.26 0.967274 5.53857 GCTMAGDB 15.5 11.7321 5.53796 GCAACTAG 1.32 0.413472 5.41781 TRCTTGGC 3.04 1.49826 5.28404 GGAAGTVC 3.98 2.17113 5.26598 CTGGRHBG 21.76 17.4349 5.1375 AYAWCAAA 2.86 1.38137 5.11643 AATTCVTM 3.44 1.78807 5.10539 CSATMBTK 9.18 6.3248 5.04653 ASGTBACA 4.62 2.66233 5.02327 TACRGTHN 6.22 3.91096 4.9514 TSRCTYAG 6.6 4.2186 4.89751 TGDAACRA 3.66 1.96011 4.83365 ACADAAYA 4.34 2.46312 4.82311 CSTGMSTR 11.58 8.39605 4.75348 WAGGWKAG 9.4 6.54048 4.7233 TCCTTCKG 4.1 2.28959 4.72215 TTAGGGNA 3.76 2.04265 4.64932 AGGGYWRG 11.72 8.53163 4.62002 KGTGGGGR 10.44 7.43368 4.60795 GRAKGRAG 15.48 11.8392 4.5586 GRTAGGCY 3.92 2.17228 4.4307 GATYGYAG 2.98 1.49547 4.40433 TGCCTGGW 3.32 1.73831 4.36415 TGRAGMSA 10.32 7.36025 4.32996 CGGWGBCG 4.86 2.89518 4.23242 TWATATGG 1.68 0.647261 4.23233 GTAKGYGD 5.82 3.64912 4.19418 CRTWCTTR 3.72 2.03962 4.15727 GAHAGADM 13.52 10.1565 4.15136 KCGTCRCK 3.22 1.6785 4.12301 TSGCTGBC 7.52 5.03561 4.05914 AARCSAAT 3.08 1.58278 4.03983 ACGTSATS 2.24 1.00778 4.02141 TTAWHGGC 5.56 3.45604 4.01987 TWCAASTC 2.84 1.42011 3.90339 CCGHAGCS 4.74 2.82655 3.86528 ACNCACYC 7.38 4.94355 3.79392 AGTGSGCT 2.98 1.52468 3.76929 AKGAATKB 8.66 6.01998 3.67272 GSACWBGG 10.54 7.61974 3.66571 AVWWCAAS 12.52 9.34048 3.64562 RGRAAAKG 14.42 11.0224 3.59729 AWGTRTST 3.9 2.20581 3.57418 RTGCTGGG 4.16 2.40346 3.54258 CTCATCTR 2.22 1.01474 3.4813 GYAKCGMK 5.82 3.70317 3.47329 ATTGTGCC 1.58 0.611583 3.36937 GCDAGRGG 9.66 6.90163 3.33313 AAAGACMA 3.12 1.64708 3.30482 GCKDCGGC 5.6 3.54126 3.29321 GSTYGCTR 6.08 3.92839 3.26208 YCCGRCCS 6.92 4.6121 3.25833 CYTGCGCR 3.8 2.15233 3.20481 CACSGCCS 4.24 2.48985 3.12928 GCYKCGCK 7.18 4.83741 3.12899 ARCATCWR 5.78 3.69836 3.11982 CAACTMGG 1.86 0.7935 3.11148 GTRASTRD 11.22 8.27577 3.06216 ACCVWRHC 17.4 13.7829 2.98656 MGACYCGV 6.52 4.31421 2.91298 AGGRGVCA 11.92 8.91816 2.79801 TCTCCTAG 2.74 1.40227 2.75951 ARTTYKYA 8.74 6.18679 2.68059 AAWAMGAA 3.94 2.28972 2.67237 AATGGGGA 2.06 0.940477 2.63918 TGCYGTTD 4.48 2.71168 2.56411 GTCGTYAM 1.28 0.456555 2.55426 TYGCTARG 2.68 1.37137 2.51353 KAATTTVD 7.64 5.27705 2.50815 ASTGCGCA 1.44 0.555018 2.39372 AAATRRAB 8.96 6.40461 2.38717 WMGGYSGG 12.12 9.14551 2.38206 TCRTATYG 1.22 0.427041 2.36038 TARCATMW 3.5 1.97864 2.32759 TABWTAAY 4.1 2.43862 2.25135 TCKHTTCG 2.6 1.32801 2.23199 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete