Task #1597 - 4ca21ebb Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 4 years ago 4 years ago 4 years ago 4 minutes (272sec) Positive, Negative Float, Integer, Open Results Motif positions Motif Occurrence(%) Expected(%) -log10(Binomial prob) GATRARGC 60.44 1.46624 8195.99 CYTYATCN 61.77 5.73774 4878.6 ATRARGCN 61.59 5.73774 4853.0 YTYATCNN 68.15 21.057 2222.6 TRARGCNN 67.82 21.057 2192.86 TYATCBNN 61.52 29.8653 929.59 RARGCVDD 50.86 32.9098 299.12 TYATCANN 23.4 11.1475 261.747 RARGCNCN 30.68 21.057 112.209 DYHHGATR 42.02 32.9098 80.5712 RARGCTDN 23.53 16.2481 77.9199 ARGCGDNN 38.17 29.8653 70.3891 ARGCYVVH 40.79 32.9098 61.0717 CNHNGATR 37.49 29.8653 59.8463 GHYGCYTY 12.92 8.48244 50.0561 ARGCANVN 36.64 29.8653 47.8736 DRDDGATR 39.12 32.9098 38.9562 ARGCHNTB 28.46 23.3573 32.2147 DYNGGATR 20.2 16.2481 25.4773 ATCTHVVN 37.52 32.9098 22.5376 ARGCYNVG 19.62 16.2481 19.2276 ATCRKDVB 36.78 32.9098 16.5431 YATCDCRN 19.09 16.2481 14.3261 DRCNGATR 19.05 16.2481 13.988 GYGGCYTB 5.85 4.3348 12.6485 ATCMMNDS 33.01 29.8653 12.1307 RGCGDRBY 26.22 23.3573 11.7193 ARGCGCVN 10.19 8.48244 9.5845 ATGNNTTA 7.13 5.73774 9.06394 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 8 Minimum motif score 35 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 5 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 0 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 0 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 0 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 0 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete