Task #3343 - 6268e58e Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 43 minutes (2594sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TRTTKACH 46.6707 12.9314 1672.6 GTMAAYAN 47.4649 13.8824 1604.41 RTTKAYHY 55.2404 29.5329 703.06 TTTRYHTW 44.5589 24.0844 489.637 TMAAYADB 48.931 28.7039 443.301 AAYMAAYA 21.0228 9.65303 278.087 TGRMCTYD 32.289 18.4247 266.234 GVMCTYDG 36.9753 22.3831 262.844 RAGKYCAN 38.4501 24.0076 247.99 AARCAARS 22.8903 11.7095 236.377 GGGHGGGG 7.60974 2.06962 217.655 TTRHTTWK 35.6837 22.6347 209.492 GGGGHGGG 7.4352 2.06962 205.939 KACHTWGN 32.2541 20.3991 184.079 GRGGBHGG 21.4242 11.9439 169.878 AGKTCRND 29.1736 18.4823 159.491 AAAVAAAA 15.6645 7.93258 154.581 TTGACWTW 8.49987 3.31207 139.815 RGDCHRAG 36.7222 25.7071 138.662 WTGTWTGY 14.1897 7.26901 133.405 TRWTTGCW 14.085 7.49521 118.481 ACTTDGNH 32.2018 22.4019 118.291 TVRCTHWG 30.3168 20.9787 111.675 GGYVGRVG 21.5638 13.7185 105.498 GTHBACAR 19.7836 12.4101 100.335 RSGHWSGR 35.2649 25.9878 96.5224 CTWKGYWV 37.7084 28.7354 85.0227 GVASGNMG 22.4016 15.1694 82.7245 RRGAHAGR 29.1299 21.0547 82.271 RCCTYDGY 24.5309 17.0359 81.723 TTYGTTYG 6.10001 2.5964 80.285 GAGNNAGG 20.8482 14.001 78.4767 TRYGTAYN 15.4464 9.60297 76.3722 TTRDGYAA 14.8617 9.21932 73.459 WGVGRYRG 32.6294 24.6051 73.2587 CGCSBSCG 2.09442 0.442022 72.6777 RCTCRSKV 23.8764 16.8857 70.9905 ATMRAYAB 17.5583 11.5072 70.8206 TTKYTTTC 11.5193 6.66857 70.5229 TTKAYWSA 22.803 16.0029 69.7276 AGMYARGV 25.7003 18.5875 68.5639 AAYWARRM 32.6206 24.8453 68.0038 ACWRAGMH 29.4354 21.9947 67.0076 TAAYCCYA 4.67755 1.88359 66.8221 GCMCYGNS 21.2933 14.8434 66.0474 ARAMHGAA 17.3924 11.6032 64.0504 AARAAAAB 16.1707 10.601 63.6198 WYCSYABC 21.7122 15.32 63.18 GCGNGCGS 1.94607 0.435568 62.4276 CWCCDCCS 9.55581 5.37575 62.3563 TAMRYABA 20.6039 14.4708 60.4778 TSVMYTYC 37.08 29.3835 60.1293 GTDYGYAY 11.7375 7.21307 56.9739 GTYCAARG 6.10874 3.01317 55.3999 AWTCVATB 10.4023 6.22094 54.9005 YTGYCCTB 19.4083 13.703 54.0266 AGSSCMGV 20.9617 15.073 53.5289 AANHGAAA 17.2528 11.9188 52.4576 RCAWRCAS 21.3806 15.5303 51.481 MTSGRATB 14.3381 9.52236 51.009 CGBKCGSB 3.57797 1.41679 50.6676 TRTYKATM 10.4983 6.42529 50.4168 TCNGCYTC 9.5209 5.6942 49.1573 ACRCRCAC 6.34436 3.31229 48.8023 AWTVABTA 11.5891 7.36159 48.3314 VKCACYGN 25.744 19.5711 48.268 GTSSKNGG 16.8514 11.7525 48.068 ACCMCSMC 6.46653 3.43311 47.2971 GAAYKVAH 18.012 12.7917 47.0503 SGCGDCGS 1.64936 0.403763 45.9217 TTAWCTWD 9.18056 5.52097 45.8965 RRWKAAMG 22.7158 17.0278 44.804 CACSCMCV 9.50345 5.81851 44.3873 CCABCACB 9.49472 5.83859 43.4866 TGYMCTKK 21.1537 15.727 43.0074 CRGCCYBG 11.3273 7.32904 42.907 GSASGHGG 9.7827 6.08516 42.8942 TSCSTSCS 9.95724 6.23244 42.6341 ATSAAYDA 8.52605 5.11958 42.0652 SCTMASCB 16.6245 11.8412 41.3457 ATTYGYWT 7.45266 4.32794 40.7158 GGKCRYNG 14.1548 9.81212 39.394 GCMMGSCY 14.4777 10.0885 39.3359 KACRGAKN 18.876 13.8983 39.2506 GSCTGGSC 8.07226 4.85435 38.9754 AARBAHGA 17.3488 12.5829 38.8089 CRGGCHSG 9.33764 5.90601 37.3209 TAYVYAAB 15.9002 11.4057 37.0678 GGWYRGKG 11.6502 7.82857 36.3804 CSYTCCSK 7.33048 4.38547 35.1989 TTARAAAW 8.10716 4.99413 35.1782 GCSGYCGS 1.38756 0.354338 35.072 AKAGYRAR 15.1671 10.8681 34.9537 DRCTCAGV 21.2671 16.2733 34.3838 AGMCYTKG 12.3309 8.5165 33.3713 TAAAAWWA 8.25552 5.18503 32.8367 GRAGHYVG 21.7035 16.8431 31.234 TAMHYACB 18.204 13.7158 31.0826 GGAWVGAN 15.682 11.497 31.0615 TCACTGNV 13.4392 9.55908 31.0187 AWRTACAH 10.891 7.40681 30.9254 YGAVCBAN 24.496 19.4323 30.4586 CGVMGCGS 1.597 0.496047 30.3989 WMYTAACY 9.18056 6.01644 30.3359 GASNTGGV 21.5551 16.775 30.0945 DRCSAAHG 16.2667 12.0998 29.2433 GGRGGGGG 3.40344 1.63615 28.9042 ACMTWGHH 23.7543 18.8557 28.7997 AGYGAKYB 11.9993 8.43228 28.6982 GCGGVSCG 1.18684 0.30627 28.3069 TSMKTTCB 18.0557 13.7342 28.2868 AAATHRAA 9.48599 6.39749 26.8495 GAAADGWM 13.3694 9.69871 26.6842 GYAYGYGY 6.46653 3.96992 26.4111 CWTGYTYG 8.21189 5.38357 25.9471 CWCYGTRN 26.8697 21.9251 25.8732 TGYCTYWG 13.0029 9.42789 25.7187 TKYAATCC 3.92704 2.06968 25.6165 AAGAAMAA 5.42805 3.19452 25.3529 GATTDCRD 8.63077 5.75114 25.281 KVCMAAGS 24.2342 19.5255 25.2541 AWKCYARG 14.9489 11.1485 25.2285 KTRCTMWG 14.9228 11.1288 25.1653 WCSSAGCD 11.6764 8.33121 24.7751 ACCCTAAC 1.27411 0.37723 24.6642 TTGGHTTB 12.4444 9.02025 24.1551 RRYAWGCR 16.1096 12.2561 23.7053 AWSRTKAA 11.3622 8.11411 23.6449 RGCSTRSG 8.09844 5.37814 23.5653 KCCKCCCN 12.1913 8.83305 23.5033 TTBGTWRW 18.3786 14.3022 23.4257 GTACTTDG 2.7053 1.26646 23.0664 RTYBAYYG 18.8847 14.7952 22.8281 TGYRTGYG 8.7704 5.96246 22.8061 TWACCTTD 5.87311 3.6236 22.508 GGGATTAM 2.11188 0.887947 22.4749 AAARATYA 6.23964 3.92515 22.1409 AGWCCAKS 9.14565 6.35491 20.8967 AGKTCABC 6.24836 3.98384 20.5796 TSGAAYTC 2.98455 1.50853 20.3952 RCSTKCSY 14.1635 10.7189 20.3444 AWWGASAA 10.5856 7.60468 20.2947 TAMTTAAV 4.18885 2.39061 20.2274 MTTAWCYN 15.9613 12.336 20.0212 WMKGTMGH 13.8756 10.496 19.7765 TRGWATBK 14.8006 11.3222 19.6583 MGABGRMR 22.1136 17.9881 19.1769 AMCWYBGA 16.0136 12.4495 18.9159 AACCCTAA 1.50973 0.566538 18.8324 AMYGAADM 14.0501 10.7252 18.4528 RCDTRGTG 7.94136 5.45819 18.2248 ARHYAYYG 26.4421 22.1276 17.7416 KAGMCSRG 8.58714 6.02391 17.6735 TGCGCRYG 1.09957 0.347076 17.6713 ATRTRTAC 2.72275 1.38626 17.3394 CRCWCACS 5.86439 3.78883 17.2805 GASSKRMG 11.9033 8.9132 17.0034 ACCMTGYC 4.70373 2.87709 16.9771 CSGGKCGN 1.7279 0.72574 16.8777 CGAVCGBN 2.12933 0.987373 16.8524 DNGMAATG 19.068 15.3573 16.7901 CSTMCSBD 16.9212 13.4087 16.6943 CAGCTACK 2.05079 0.93836 16.6584 GGDCTACR 3.38598 1.89329 16.1732 ABGWAGMN 24.5135 20.4774 15.7683 GRASGHTG 8.79658 6.30621 15.3842 AGGGYKRG 8.37769 5.96023 15.1526 TTYGAGAC 2.24278 1.09956 14.9013 CGYCGCCN 1.1083 0.380053 14.7843 MRCTBGGS 17.2877 13.8749 14.7315 TVSVTTCD 23.0736 19.2153 14.7269 WDGGMAMG 17.6542 14.2157 14.6405 ATYKHATY 12.0342 9.17424 14.4015 AAACCAAM 4.32848 2.6718 14.1139 CGSWKNCG 2.36495 1.20105 14.0673 CHGCWCBG 12.2611 9.40305 13.9255 GCCSYWSC 9.08456 6.62957 13.8176 TTTMRAAA 8.07226 5.76521 13.762 AGTBCYWG 13.893 10.8779 13.6196 CAGSYCAG 9.31146 6.83914 13.5474 GTAGCTGG 1.64063 0.720106 13.5132 GWTCKHDG 14.5912 11.523 13.3568 TGAMWTHW 22.2969 18.6095 13.2581 WCSCRCSC 5.03534 3.26367 13.23 KCBTCCKG 10.0009 7.45539 13.2131 CMAKGTYS 12.4007 9.57272 13.1667 TAGCTGGG 1.87625 0.88579 12.9198 GGMVGAGM 11.3273 8.63677 12.9067 AKCACKYG 4.06667 2.51003 12.7227 AWATGBAW 9.91361 7.41376 12.5779 AGAAHHAA 14.1635 11.1956 12.4812 CGSMCGGB 1.44864 0.614537 12.3489 TCRKTWWC 8.35151 6.08222 12.1514 WRGCMCYG 13.1774 10.3323 12.1218 ATTWAVAA 8.16825 5.93362 11.9741 HGTRGACD 10.123 7.63507 11.8931 TCRAKRCC 4.35466 2.77345 11.6301 GCACDCRC 4.13649 2.60208 11.569 CSCMCCCR 4.5641 2.94643 11.477 DAMGCAAK 7.32176 5.24078 11.3401 TGGTGGYG 2.54822 1.39293 11.322 AACCRAHC 3.72633 2.29732 10.9974 GRVMTYCG 4.47683 2.89329 10.9948 GGGGAHGG 3.01946 1.75567 10.8777 TGAKTVAB 13.2909 10.5256 10.745 GTGBGGTG 4.10158 2.60388 10.6823 GACTCBGN 7.23449 5.19883 10.6629 TTCRAGGC 1.99843 1.01604 10.4951 TGMKTTKS 15.6995 12.7392 10.3742 GTKCCMGG 4.49428 2.93074 10.3408 TGKYTGYC 11.912 9.31495 10.3278 DGCSGCCG 1.09085 0.420982 10.2937 ATMTWTGC 3.26381 1.96119 10.2208 CKGSGHAB 15.4726 12.5496 10.1349 ATRHAATW 8.45624 6.28326 10.0239 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 10 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 0 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete