Task #3356 - 097de65c Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 26 minutes (1566sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) RGGAMSTG 58.3815 14.2799 1010.96 GGAMSTGV 56.4028 15.0119 882.388 ACKWCCYY 54.7799 14.849 830.283 DGAGKWMG 49.5331 17.0246 535.612 GAABTGRN 54.9355 22.8632 459.986 AASRKGAA 33.8373 9.81191 410.3 AAASRGGA 22.4322 5.96986 280.781 AANYGAAA 15.2735 3.54497 213.475 WRSGKAMG 31.414 14.5305 170.565 RAAASRGG 22.9658 10.2472 124.321 AGGWMGTM 14.6954 4.97668 123.246 TWCSTMYC 23.655 10.9081 119.64 GGGYGGRG 11.6719 3.47437 115.341 TGAKTCAB 11.0716 3.21345 112.626 ANTSAAAV 25.6114 13.1029 101.663 GAGKHMGV 38.1058 23.4526 96.6072 GKWMGTHR 23.7217 12.0306 94.3254 AGTTCVTS 15.0511 6.40761 82.4411 AGRNMSGA 34.104 21.051 80.9656 RHAGKWMG 36.8386 23.616 77.6075 AAKTSRKD 37.6612 24.4109 76.4714 AGDHMGRG 39.0173 25.7243 74.7603 GGGGHGGG 10.6492 3.89383 74.2081 TTVSTCAH 22.61 12.7695 63.5277 GKGGKHGG 19.2085 10.219 62.4341 ACKWMCTR 14.9622 7.16436 61.6142 WRVGGAAC 23.277 13.4272 61.28 AAKSMGRA 24.3442 14.3046 60.8365 AWARVBAA 30.9693 19.9289 58.7524 AADSCAVR 38.9951 27.4739 52.726 GKCNGRGY 28.7461 18.592 51.3784 GARSTCMG 13.0058 6.26805 50.7642 GGHBSGRG 26.8564 17.4881 44.9477 TGVWTWCD 21.1205 12.7656 44.6841 AWMSAAAV 18.7639 10.9118 44.3624 GSGABSGR 15.7848 8.68492 43.1428 BWGAAASV 39.0618 28.5041 42.3182 GAYTCRNN 24.3664 15.6507 41.6517 GKWMGRGV 34.6821 24.6737 40.8536 AKTCRBYN 37.8613 27.5932 40.4229 DRCCTKGV 32.5478 22.8702 39.7777 AWDABAAA 18.9195 11.4087 38.6885 CRGRKMSG 19.1863 11.638 38.4631 AAHTMRAW 12.0053 6.17824 37.62 GAAWBSAR 25.1223 16.6552 37.0792 TGKRKKYG 25.1445 16.9671 33.6595 AGSWMGCN 26.7452 18.4126 32.9272 AYRCVYAC 13.9173 7.88191 32.6557 KGAWWYGR 17.0298 10.3184 32.6453 RGGBMMGG 26.0338 17.8765 32.0549 ADHHAAGR 37.2388 27.9089 31.9251 TCCBSWYC 32.2365 23.4411 31.133 GCNKGGMY 27.4344 19.2051 30.8825 AGGGNAAG 14.3175 8.32551 30.5171 AGRWBSAA 25.1667 17.4147 28.9553 WGSGHKSG 28.5683 20.4139 28.7467 TAWTYWWA 7.759 3.62239 28.3947 TDGYYWTR 27.39 19.4736 27.7586 GAAKTGYN 22.6767 15.3954 27.6406 GRABYMGR 30.747 22.475 27.609 GRKCHGRG 28.8128 20.7579 27.5098 CGMVYSCG 4.44642 1.57043 26.9967 ACASKTCC 10.7381 5.90475 25.4874 DDACCBWR 37.6834 29.0922 25.2641 CRYCCASB 19.6309 13.0552 24.9649 ACMWABMM 24.0551 16.8932 24.3905 CRADYCRN 24.8333 17.6051 24.0612 DGSTCMGH 27.8791 20.3152 23.8635 AKGWAAYG 8.09249 4.11881 22.7364 GBAMGCNR 30.5914 22.9358 22.2503 WTTMRWAW 13.2726 8.10027 21.8669 AABYSGAN 19.831 13.565 21.2405 GCBYKGRG 24.5665 17.6716 21.1909 GCKTGCBY 8.84838 4.7515 21.1482 GCSGNGCG 2.86794 0.873927 19.9061 WBTMKGTH 30.6136 23.3444 19.0467 AAWAVGGA 9.004 5.00347 18.8084 RACCWYAR 13.7839 8.7538 18.7067 TTAVAWAD 12.2277 7.53126 18.3433 GMMAWSSR 35.4824 27.9745 18.017 GASSKAVG 15.6514 10.3468 18.0048 KAGTMACN 11.0271 6.61333 17.9295 RNTSGAKH 30.8804 23.7305 17.9263 TCSDMCCV 20.3868 14.3875 17.7738 TMKGTMWH 20.6759 14.6411 17.7412 WGGGGYGG 6.95865 3.60156 17.0296 ANRKMCAG 31.0138 23.9708 17.0192 GGGYKYGG 8.15918 4.49593 16.7492 TTTNKWTM 19.831 14.0337 16.566 CGGWMGYG 3.80169 1.50117 16.4855 WGANMWAG 26.723 20.2433 15.6239 ACYTCYGC 8.60382 4.90345 15.5645 RCTCMGHD 25.5892 19.2347 15.5231 CMRGGCWS 24.8333 18.5595 15.5029 TGGAKMNR 23.655 17.5161 15.4402 GCGBDCGR 3.26812 1.22682 14.9608 GGSANKMG 24.0329 17.9504 14.6357 ACCHHRGV 35.6158 28.6028 14.4704 WTGGRGWW 14.3175 9.5713 14.324 AGTKMGHW 13.9173 9.27941 13.8795 TGAKGTCA 3.6683 1.51382 13.671 GTVSGBHG 20.1867 14.6634 13.6629 AWYMAAYM 12.9613 8.52032 13.5266 RKCCABRG 24.8777 18.8955 13.1555 TDGMWTRK 22.5434 16.8081 13.1304 KAMMAASR 21.4984 15.8941 13.0213 GKAKSTGR 16.1183 11.2245 12.9416 GCGCDYGC 2.3566 0.763567 12.8466 AGAMVTGA 9.73766 5.98098 12.7234 TGWAWMTV 14.7843 10.1291 12.5881 AKKCKKRS 34.482 27.8325 12.5121 AAAHTSAA 6.11383 3.24892 12.2652 AAMKGAGA 7.46999 4.26799 12.0801 AWVAAWAS 18.5193 13.3982 11.9953 DSGCHCCG 6.93642 3.87201 11.9885 CGVCGCSG 1.71187 0.454913 11.7192 SGCGKCGV 3.06803 1.21634 11.4613 TAAGVWMG 6.35838 3.50929 10.8735 CASGCWNS 27.8791 21.9605 10.7497 CYKAGYWD 28.1458 22.2244 10.6247 ATWKDYAT 8.62606 5.26927 10.5413 DDYGAWTG 10.6714 7.00409 9.44825 GGCGNDCG 2.51223 0.948248 9.31884 GTKGHTWH 21.2094 16.1185 9.24213 WCRAAHKM 15.6959 11.2918 8.99669 ACADGAAC 5.31347 2.86274 8.77821 GKWMGTMY 13.028 9.03519 8.75494 AYGBAYGB 7.71454 4.69723 8.62954 AGCMGAAG 6.26945 3.61277 8.18168 AKBAACTM 9.35972 6.05358 8.10157 GGKWMGTM 8.09249 5.03798 8.07873 TRSGBAKG 14.8955 10.7139 8.01018 GSTWSSTG 15.2735 11.0442 7.98162 CCAGGSCN 13.0947 9.18062 7.91686 GKAACTMR 6.60293 3.89253 7.81738 ATBTMRWM 16.1627 11.8379 7.81284 ATHRNTCA 9.71543 6.38381 7.64844 GGWBSGRY 17.4077 12.9604 7.57133 AKDCAGAH 18.1192 13.597 7.50931 CGSTMSGK 2.60116 1.07229 7.19137 TKCBTGYC 15.7848 11.5948 7.10548 GSAGNCMG 20.5202 15.8102 7.00396 KGAAAGRG 10.3157 6.96875 6.69659 WDCAAKGY 13.6727 9.81899 6.6338 AGTWSMTW 10.4046 7.05274 6.59473 AWGAAASV 13.4282 9.61957 6.53855 RKCVGASR 28.0791 22.8113 6.51517 TWWRTWHG 13.5616 9.75501 6.3611 GWRSGGAM 17.8524 13.5157 6.34806 GVBCGKCG 3.17919 1.48516 6.26069 SCGKCGRS 3.71276 1.85957 6.09513 GRGABAGG 12.4277 8.8165 6.06057 GGCKTKGV 9.89329 6.7024 5.83599 AABAAMAW 11.0271 7.66079 5.75293 CAHTTCTS 13.3837 9.67963 5.69994 RGGSYKTG 19.2975 14.925 5.52049 GAWBTCAH 14.1841 10.3986 5.4953 GTVBGTGC 6.31392 3.84633 5.36972 WRAWTMGD 11.8275 8.40218 5.18917 ACMKARWD 25.0556 20.2446 5.10942 ADAATKMG 6.51401 4.03492 4.96424 TYAWTYTM 10.2712 7.10995 4.94133 GGGYGGRH 11.6052 8.30705 4.36235 MWAWGCAS 14.851 11.1297 4.35593 TABTCAWY 4.71321 2.69362 4.26522 TASAWATR 4.20187 2.33009 3.96979 AWHTAYHA 12.0498 8.75509 3.81404 AGNAWCMG 14.9844 11.3275 3.76811 AGAWASAW 8.24811 5.54406 3.75159 RSGGAACK 8.20365 5.52269 3.59468 TAYGSCGA 1.00044 0.260815 3.56897 STGGAGHN 26.8341 22.1725 3.56702 GYTVGSTY 13.0725 9.70027 3.36798 GTWCVTVC 9.53757 6.66744 3.30476 KYCAWTCR 5.86928 3.6654 3.20828 CWNGGTGV 18.4526 14.527 3.13454 GCSCMSGS 10.0489 7.13569 2.99472 KBCWTAGH 18.2526 14.3784 2.93018 CTGGVCKG 9.44864 6.63736 2.8955 RAKTVGCH 19.3642 15.3938 2.89277 TAWTTWWG 4.51312 2.63635 2.86029 GNAGMDMG 32.3699 27.5616 2.74945 TGGABKNA 16.1627 12.5274 2.72791 KAGWHMAR 27.7679 23.2247 2.64731 ASCTGGRB 13.1392 9.86712 2.55786 GAKRTKSG 8.60382 5.97131 2.47273 AAAAAAAA 3.37928 1.81547 2.46518 RRGGGGCG 3.49044 1.90036 2.4009 MATGYATR 3.91285 2.2234 2.2443 GKYACBGD 14.94 11.5088 2.2318 CAASAWMV 14.1174 10.7799 2.21206 AWTSGGKA 4.06847 2.35524 2.02619 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete