Motif finder

Task #3356 - 097de65c

Status Start End Updated Duration Sequences Logs Task Bundle
finished 2 months ago 2 months ago 2 months ago 26 minutes (1566sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
RGGAMSTG 58.3815 14.2799 1010.96
GGAMSTGV 56.4028 15.0119 882.388
ACKWCCYY 54.7799 14.849 830.283
DGAGKWMG 49.5331 17.0246 535.612
GAABTGRN 54.9355 22.8632 459.986
AASRKGAA 33.8373 9.81191 410.3
AAASRGGA 22.4322 5.96986 280.781
AANYGAAA 15.2735 3.54497 213.475
WRSGKAMG 31.414 14.5305 170.565
RAAASRGG 22.9658 10.2472 124.321
AGGWMGTM 14.6954 4.97668 123.246
TWCSTMYC 23.655 10.9081 119.64
GGGYGGRG 11.6719 3.47437 115.341
TGAKTCAB 11.0716 3.21345 112.626
ANTSAAAV 25.6114 13.1029 101.663
GAGKHMGV 38.1058 23.4526 96.6072
GKWMGTHR 23.7217 12.0306 94.3254
AGTTCVTS 15.0511 6.40761 82.4411
AGRNMSGA 34.104 21.051 80.9656
RHAGKWMG 36.8386 23.616 77.6075
AAKTSRKD 37.6612 24.4109 76.4714
AGDHMGRG 39.0173 25.7243 74.7603
GGGGHGGG 10.6492 3.89383 74.2081
TTVSTCAH 22.61 12.7695 63.5277
GKGGKHGG 19.2085 10.219 62.4341
ACKWMCTR 14.9622 7.16436 61.6142
WRVGGAAC 23.277 13.4272 61.28
AAKSMGRA 24.3442 14.3046 60.8365
AWARVBAA 30.9693 19.9289 58.7524
AADSCAVR 38.9951 27.4739 52.726
GKCNGRGY 28.7461 18.592 51.3784
GARSTCMG 13.0058 6.26805 50.7642
GGHBSGRG 26.8564 17.4881 44.9477
TGVWTWCD 21.1205 12.7656 44.6841
AWMSAAAV 18.7639 10.9118 44.3624
GSGABSGR 15.7848 8.68492 43.1428
BWGAAASV 39.0618 28.5041 42.3182
GAYTCRNN 24.3664 15.6507 41.6517
GKWMGRGV 34.6821 24.6737 40.8536
AKTCRBYN 37.8613 27.5932 40.4229
DRCCTKGV 32.5478 22.8702 39.7777
AWDABAAA 18.9195 11.4087 38.6885
CRGRKMSG 19.1863 11.638 38.4631
AAHTMRAW 12.0053 6.17824 37.62
GAAWBSAR 25.1223 16.6552 37.0792
TGKRKKYG 25.1445 16.9671 33.6595
AGSWMGCN 26.7452 18.4126 32.9272
AYRCVYAC 13.9173 7.88191 32.6557
KGAWWYGR 17.0298 10.3184 32.6453
RGGBMMGG 26.0338 17.8765 32.0549
ADHHAAGR 37.2388 27.9089 31.9251
TCCBSWYC 32.2365 23.4411 31.133
GCNKGGMY 27.4344 19.2051 30.8825
AGGGNAAG 14.3175 8.32551 30.5171
AGRWBSAA 25.1667 17.4147 28.9553
WGSGHKSG 28.5683 20.4139 28.7467
TAWTYWWA 7.759 3.62239 28.3947
TDGYYWTR 27.39 19.4736 27.7586
GAAKTGYN 22.6767 15.3954 27.6406
GRABYMGR 30.747 22.475 27.609
GRKCHGRG 28.8128 20.7579 27.5098
CGMVYSCG 4.44642 1.57043 26.9967
ACASKTCC 10.7381 5.90475 25.4874
DDACCBWR 37.6834 29.0922 25.2641
CRYCCASB 19.6309 13.0552 24.9649
ACMWABMM 24.0551 16.8932 24.3905
CRADYCRN 24.8333 17.6051 24.0612
DGSTCMGH 27.8791 20.3152 23.8635
AKGWAAYG 8.09249 4.11881 22.7364
GBAMGCNR 30.5914 22.9358 22.2503
WTTMRWAW 13.2726 8.10027 21.8669
AABYSGAN 19.831 13.565 21.2405
GCBYKGRG 24.5665 17.6716 21.1909
GCKTGCBY 8.84838 4.7515 21.1482
GCSGNGCG 2.86794 0.873927 19.9061
WBTMKGTH 30.6136 23.3444 19.0467
AAWAVGGA 9.004 5.00347 18.8084
RACCWYAR 13.7839 8.7538 18.7067
TTAVAWAD 12.2277 7.53126 18.3433
GMMAWSSR 35.4824 27.9745 18.017
GASSKAVG 15.6514 10.3468 18.0048
KAGTMACN 11.0271 6.61333 17.9295
RNTSGAKH 30.8804 23.7305 17.9263
TCSDMCCV 20.3868 14.3875 17.7738
TMKGTMWH 20.6759 14.6411 17.7412
WGGGGYGG 6.95865 3.60156 17.0296
ANRKMCAG 31.0138 23.9708 17.0192
GGGYKYGG 8.15918 4.49593 16.7492
TTTNKWTM 19.831 14.0337 16.566
CGGWMGYG 3.80169 1.50117 16.4855
WGANMWAG 26.723 20.2433 15.6239
ACYTCYGC 8.60382 4.90345 15.5645
RCTCMGHD 25.5892 19.2347 15.5231
CMRGGCWS 24.8333 18.5595 15.5029
TGGAKMNR 23.655 17.5161 15.4402
GCGBDCGR 3.26812 1.22682 14.9608
GGSANKMG 24.0329 17.9504 14.6357
ACCHHRGV 35.6158 28.6028 14.4704
WTGGRGWW 14.3175 9.5713 14.324
AGTKMGHW 13.9173 9.27941 13.8795
TGAKGTCA 3.6683 1.51382 13.671
GTVSGBHG 20.1867 14.6634 13.6629
AWYMAAYM 12.9613 8.52032 13.5266
RKCCABRG 24.8777 18.8955 13.1555
TDGMWTRK 22.5434 16.8081 13.1304
KAMMAASR 21.4984 15.8941 13.0213
GKAKSTGR 16.1183 11.2245 12.9416
GCGCDYGC 2.3566 0.763567 12.8466
AGAMVTGA 9.73766 5.98098 12.7234
TGWAWMTV 14.7843 10.1291 12.5881
AKKCKKRS 34.482 27.8325 12.5121
AAAHTSAA 6.11383 3.24892 12.2652
AAMKGAGA 7.46999 4.26799 12.0801
AWVAAWAS 18.5193 13.3982 11.9953
DSGCHCCG 6.93642 3.87201 11.9885
CGVCGCSG 1.71187 0.454913 11.7192
SGCGKCGV 3.06803 1.21634 11.4613
TAAGVWMG 6.35838 3.50929 10.8735
CASGCWNS 27.8791 21.9605 10.7497
CYKAGYWD 28.1458 22.2244 10.6247
ATWKDYAT 8.62606 5.26927 10.5413
DDYGAWTG 10.6714 7.00409 9.44825
GGCGNDCG 2.51223 0.948248 9.31884
GTKGHTWH 21.2094 16.1185 9.24213
WCRAAHKM 15.6959 11.2918 8.99669
ACADGAAC 5.31347 2.86274 8.77821
GKWMGTMY 13.028 9.03519 8.75494
AYGBAYGB 7.71454 4.69723 8.62954
AGCMGAAG 6.26945 3.61277 8.18168
AKBAACTM 9.35972 6.05358 8.10157
GGKWMGTM 8.09249 5.03798 8.07873
TRSGBAKG 14.8955 10.7139 8.01018
GSTWSSTG 15.2735 11.0442 7.98162
CCAGGSCN 13.0947 9.18062 7.91686
GKAACTMR 6.60293 3.89253 7.81738
ATBTMRWM 16.1627 11.8379 7.81284
ATHRNTCA 9.71543 6.38381 7.64844
GGWBSGRY 17.4077 12.9604 7.57133
AKDCAGAH 18.1192 13.597 7.50931
CGSTMSGK 2.60116 1.07229 7.19137
TKCBTGYC 15.7848 11.5948 7.10548
GSAGNCMG 20.5202 15.8102 7.00396
KGAAAGRG 10.3157 6.96875 6.69659
WDCAAKGY 13.6727 9.81899 6.6338
AGTWSMTW 10.4046 7.05274 6.59473
AWGAAASV 13.4282 9.61957 6.53855
RKCVGASR 28.0791 22.8113 6.51517
TWWRTWHG 13.5616 9.75501 6.3611
GWRSGGAM 17.8524 13.5157 6.34806
GVBCGKCG 3.17919 1.48516 6.26069
SCGKCGRS 3.71276 1.85957 6.09513
GRGABAGG 12.4277 8.8165 6.06057
GGCKTKGV 9.89329 6.7024 5.83599
AABAAMAW 11.0271 7.66079 5.75293
CAHTTCTS 13.3837 9.67963 5.69994
RGGSYKTG 19.2975 14.925 5.52049
GAWBTCAH 14.1841 10.3986 5.4953
GTVBGTGC 6.31392 3.84633 5.36972
WRAWTMGD 11.8275 8.40218 5.18917
ACMKARWD 25.0556 20.2446 5.10942
ADAATKMG 6.51401 4.03492 4.96424
TYAWTYTM 10.2712 7.10995 4.94133
GGGYGGRH 11.6052 8.30705 4.36235
MWAWGCAS 14.851 11.1297 4.35593
TABTCAWY 4.71321 2.69362 4.26522
TASAWATR 4.20187 2.33009 3.96979
AWHTAYHA 12.0498 8.75509 3.81404
AGNAWCMG 14.9844 11.3275 3.76811
AGAWASAW 8.24811 5.54406 3.75159
RSGGAACK 8.20365 5.52269 3.59468
TAYGSCGA 1.00044 0.260815 3.56897
STGGAGHN 26.8341 22.1725 3.56702
GYTVGSTY 13.0725 9.70027 3.36798
GTWCVTVC 9.53757 6.66744 3.30476
KYCAWTCR 5.86928 3.6654 3.20828
CWNGGTGV 18.4526 14.527 3.13454
GCSCMSGS 10.0489 7.13569 2.99472
KBCWTAGH 18.2526 14.3784 2.93018
CTGGVCKG 9.44864 6.63736 2.8955
RAKTVGCH 19.3642 15.3938 2.89277
TAWTTWWG 4.51312 2.63635 2.86029
GNAGMDMG 32.3699 27.5616 2.74945
TGGABKNA 16.1627 12.5274 2.72791
KAGWHMAR 27.7679 23.2247 2.64731
ASCTGGRB 13.1392 9.86712 2.55786
GAKRTKSG 8.60382 5.97131 2.47273
AAAAAAAA 3.37928 1.81547 2.46518
RRGGGGCG 3.49044 1.90036 2.4009
MATGYATR 3.91285 2.2234 2.2443
GKYACBGD 14.94 11.5088 2.2318
CAASAWMV 14.1174 10.7799 2.21206
AWTSGGKA 4.06847 2.35524 2.02619

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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