Task

Motif finder

Task #644 - 8ddb9323

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
canceled	1 year, 1 month ago	1 year, 1 month ago	1 year, 1 month ago	2 days (172960sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TAGANTTG	60.54	1.46624	8216.11
AANTCTAN	61.8	5.73774	4882.87

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
8		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
1		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]

Recent tasks (67):

#3393 e5132a95 finished - Sp1_f1q30p2m3_tst_neg10

#3392 728be626 finished - TBP_48853_f1_q30_p2_m3

#3391 14744521 finished - STAT5B_5839_f1_q30_p2_m3

#3390 8752fd8e finished - SRF_51592_f1_q30_p2_m3

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#3388 430aded7 finished - NFIB_69138_f1_q30_p2_m3

#3387 d48e1868 finished - NFE2L2_NRF2_70563_f1_q30_p2_m3

#3386 6d970809 finished - _FoxA2_f1_q30_p2_m3 (rerun)

#3385 2930bfa1 finished - YBX1_64543_f1_q30_p2_m3_N (rerun)

#3384 12027a55 finished - Sp1_f1q30p2m3_tst (rerun 2)

#3383 87b49cbd finished - Sp1_f1q30p2m3_tst (rerun)

#3382 6d8ccd99 finished - YBX1_64543_f1_q30_p2_m3_N

#3381 6516e7b5 finished - Sp1_f1q30p2m3_tst

#3380 211cb970 canceled - YBX1_64543_f1_q30_p2_m3

#3379 d3f7326b canceled - SREBP1_f1q30p2m3

#3378 1f240639 finished - Sp1_f1q30p2m3

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#3348 a493f6ac finished - Sp1_Haematopoietic_Progenitor_Cell

#3347 c21afdc2 finished - Sp1_Embryonic

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#3345 6b8bed39 finished - SREBP1_Macrophage

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#3343 6268e58e finished - FoxA_2prob_1pres_30pos_0neg_3mark

#3342 977dfaff finished - FoxA_2prob_1pres_10pos_0neg_3mark

#3341 20e0a527 finished - pos_FoxA.seq

#3340 df737c96 finished - FoxA_11prob_1pres_10pos_0neg_3mark

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#3336 1aa73828 finished - FoxA_11prob_1pres_30pos_0neg_3mark

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Motif search tool