Task

Task #645 - 1671611b

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	6 months ago	6 months ago	6 months ago	7 minutes (421sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	-log10(Binomial prob)
TAGANTTG	60.54	1.46624	8216.11
AANTCTAN	61.8	5.73774	4882.87
AGANTTGN	61.73	5.73774	4872.91
ANTCTANN	67.32	21.057	2148.23
GANTTGNN	67.24	21.057	2141.13
DTCTADND	49.93	32.9098	269.421
TCTAHVHN	49.63	32.9098	260.25
ABTTGNHH	48.6	32.9098	229.954
NTCTACNN	31.99	21.057	142.399
TCTANTNN	31.78	21.057	137.263

Parameters

Complementary Minimum score Filter χ2 Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum χ2 value in contrast sequences set Statistic parameters Using of real frequencies Statistical test type(score) Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementary
8		Minimum score value
35		Maximum motif presence by chance
5		Minimum presence of motif in the seq set
pos.fst		Sequences set
0		Using real frequencies
1		using of the Chi2 (0) or Binomial (1) score
10		Number of motifs. (if 0 then search at max 1000000 motifs)
0		Markov level of frequencies, if RealFreqs==1. 0- bernulli/1- dinucleotides/2- trinucleotides
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. 
neg.fst		Contrast sequences set
10		Maximum score value in contrast seq set)
0		Minimum motif chi2 score (initial filtering)