Motif finder

Task #3640 - 55f25cfd

Status Start End Updated Duration Sequences Logs Task Bundle
finished 5 months ago 5 months ago 5 months ago 10 minutes (635sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
GGGRMTTY 22.18 8.74839 171.294
CGCABGCG 7.14 1.01044 166.456
GGGHGGRG 19.46 7.70983 145.323
GAAABYMC 25.34 12.0523 135.61
GCGMABGC 8.96 2.07762 132.485
AAKYCCCH 24.06 11.8157 117.258
TKAGTCAB 11.66 4.16184 96.7372
TGACTMAB 11.18 4.0538 89.5965
GGGGHGGG 11.04 4.02934 87.2535
GGCGKRGC 9.5 3.18936 84.8363
AANHGAAA 20.7 10.7322 83.5588
GGAAABYC 17.74 8.84009 76.9759
TRCGCAYG 4.16 0.767439 72.3433
CGKWMGYS 12.94 5.687 71.8734
TKKGGTTW 14.46 6.81861 69.2472
RCTTMCGG 6.5 2.01687 62.1685
CGRRKCSG 9.44 3.81285 59.39
KCSGDKCG 10.54 4.67104 54.9141
CGRNGRCG 9.84 4.2146 54.7696
AACYAYAR 10.2 4.46596 54.3217
AAAWMAAA 13.14 6.54871 52.8448
RGSGDCGG 12.1 5.87004 51.4468
AWBSAAAB 28.8 19.1166 51.2594
TTCRBTTY 13.64 7.10701 48.4295
GCGDNCGD 12.1 6.02803 47.6645
CTTMCGGB 7.7 3.08651 47.1546
TBGYTHKG 26.4 17.6772 43.0165
TCRBTWHC 21.86 13.9321 41.941
TSGAAABY 15.14 8.63086 40.6453
TRSTTWSH 35.34 25.7803 40.5208
WAWGCWAH 15.64 9.09155 39.3544
ADCVAABV 37.36 27.8007 38.6498
CGANCGHV 6.78 2.77003 38.5557
AKTCMCYD 24.98 16.8266 38.3225
GCGNNCGG 10.24 5.13657 37.6689
GCASGYGC 7.3 3.19131 35.8869
WTRMWTAV 22.62 15.1458 34.1415
DTCCCCWD 24.24 16.5897 33.3994
GAGTCAYN 10.56 5.58093 33.0443
ASYGAAAS 9.14 4.56571 32.868
DCGMDYCG 9.22 4.62972 32.7025
CGNDCSGG 11.26 6.1273 32.4603
AAAGYACC 4.22 1.41344 32.1385
ACHAYRRA 16.78 10.467 31.8733
GGAAKYSS 18.96 12.3566 30.457
CGKSHGCG 8.76 4.43425 29.7422
RTCACRTG 5.52 2.25455 29.6025
DWGCBAAB 24.16 16.9136 28.8193
GKVBGTGG 19.74 13.1409 28.7412
AWTNRATA 8.64 4.40735 28.4441
ASGAWSBR 23.96 16.8108 28.0252
RTBSKTWG 20.1 13.5394 27.5617
GGWGGRGS 15.46 9.74425 26.8687
TTGRWTKH 17.08 11.0946 26.5386
TVCSHAGV 34.94 26.8571 26.1975
ASSSABVG 37.9 29.6398 25.9358
GACTCABN 13.18 7.99944 25.644
CGBYDCGG 9.02 4.84371 25.1019
AADTACCH 8.54 4.52669 24.4048
TAARAHWA 12.32 7.41759 24.1417
GKCGNRCG 7.42 3.74253 23.9377
ATRAAWYA 8.98 4.90594 23.3195
GCYAWSKK 20.26 14.0729 22.9168
GCGDCSCG 5.36 2.3787 22.7684
GCGKRGCY 9.78 5.54642 22.5904
RTGCGCAS 4.22 1.66472 22.413
TDSSWWCK 32.64 25.2198 21.939
RCTTCCKY 13.08 8.19451 21.5842
GCHYYGDG 31.18 23.9239 21.5486
TKRGHAAB 31.64 24.3697 21.3412
TDYRAWTR 22.52 16.187 21.2724
AAWSRAMA 18.88 13.0782 20.8245
GGASSGHG 11.16 6.73845 20.5292
GMGKMGGG 10.04 5.86704 20.5135
AYGTVAYY 14.56 9.47908 20.497
AABHBGAW 29.9 22.9031 20.2497
WGGGYRKG 19.26 13.4655 20.1465
GCGRYGSC 7.32 3.89674 19.1646
GABCGWBS 9.28 5.37756 18.9353
AAAAYCCM 8.24 4.59288 18.8685
AWAMAAAB 18.4 12.8669 18.6343
TAMVTAWH 14.02 9.19474 18.4467
AAKAHMAA 13.36 8.69195 17.9369
ASTGCGCA 2.78 0.938944 17.8045
RCCNHAGS 35.82 28.737 17.442
GRWSGCDG 22.34 16.4319 17.3186
KRCCTKGV 24.42 18.2931 17.2216
RRMSGAAG 16.28 11.2193 16.8701
WAGCVAYR 13.0 8.53626 16.1594
KCGMKRCG 6.22 3.24736 16.1541
ACGCATGC 1.14 0.185361 16.1281
WCCSHDCC 27.42 21.1722 15.7741
RTSGHTDY 28.84 22.4778 15.7155
GBCTHCGR 8.86 5.25357 15.6786
TGWBGTMA 11.14 7.06521 15.5742
RCCAATCR 3.16 1.21808 15.5424
TCSGMCCS 5.26 2.62812 14.784
TTRCWCAW 7.84 4.56357 14.1272
GWGGBMGG 15.86 11.1156 14.1252
TGTSKDTG 11.92 7.82577 13.943
AHMTRMTA 12.76 8.52497 13.877
AGCRABNM 24.34 18.6288 13.7136
RTKACVTH 18.1 13.1263 13.3592
GGGYHGGG 9.08 5.62958 12.6235
DDCTRAGH 34.54 28.2918 12.0005
TKVCMTTK 23.16 17.777 11.9734
GCGRDCGC 3.64 1.6385 11.9376
GTCMCTDV 16.2 11.6248 11.9281
CWCYGWRB 31.22 25.1949 11.8651
RTTKMTAB 12.64 8.61011 11.737
CGYRRCGK 6.5 3.70015 11.5063
AATYCHAD 11.86 7.9863 11.4246
AYGGYRDC 11.4 7.60939 11.3686
CSKMCCGD 10.2 6.63746 11.1985
THTCBWTV 28.96 23.2014 11.097
CGCTYGCG 1.7 0.501142 11.0213
GRGAHVGR 28.48 22.7934 10.8365
GVAGASMG 14.4 10.1895 10.8006
RGYABSTG 22.36 17.2293 10.5838
AGRYGGVG 13.36 9.34444 10.3691
AYHAASAH 21.88 16.8332 10.294
AGAVMKRA 22.44 17.3549 10.1664
RWTTTATD 11.68 7.95276 10.1002
GGATTCCC 2.12 0.750987 10.0681
GSSGRCCG 5.92 3.35528 9.91331
CTGSVWAS 23.62 18.4605 9.89498
GGCMDCSG 10.14 6.69447 9.8885
CSATCTBN 13.38 9.41185 9.85004
CSGRGTCS 4.56 2.36156 9.8144
GCMCKRCS 11.06 7.46417 9.77891
AGCSTNBG 16.74 12.3346 9.68825
TMRTAAAW 7.04 4.22956 9.63809
DRBCTKAG 26.92 21.5303 9.5723
KGGCGRCG 4.18 2.11087 9.41019
ATWDYRAA 14.56 10.4879 9.22533
GGGMGGGM 8.94 5.77279 9.17723
CKGATTGG 2.26 0.867031 8.79145
TMCCCWWV 17.1 12.7807 8.55862
ACYTKGMW 15.32 11.2218 8.53562
TTKCCCHW 18.14 13.7058 8.52452
CTTWGWWV 15.4 11.3063 8.40331
AAWCSAHC 6.1 3.58694 8.33595
GACCGSAR 3.24 1.51458 8.18942
TASMKTTV 11.48 7.96349 8.16138
TCRVRTKH 31.78 26.2885 8.10781
AAMRABAA 13.72 9.9203 7.73396
ATAKKTAH 5.64 3.27494 7.69452
GGCGRCGH 4.78 2.63452 7.60146
ACTGDAWW 11.08 7.68927 7.49717
AKYCATHH 20.56 16.0335 7.29526
GRTTKCMY 15.82 11.8053 7.26239
TRAATYAY 6.14 3.69607 7.12282
ACRSHTRC 13.6 9.89112 7.04398
WGCTDNGG 23.08 18.3856 6.88544
TAYGAWWY 5.36 3.12997 6.57912
CCCCADVS 20.08 15.699 6.56383
RGGVYTSG 19.84 15.484 6.54905
TGCRCSTG 5.26 3.0567 6.53095
DAAMTACV 10.04 6.92009 6.38132
TTAAVAWA 6.76 4.23709 6.35253
TRGRATTH 8.88 5.96779 6.22766
CGKDAHCG 3.94 2.09622 6.14528
TRMAATAB 7.84 5.13637 5.966
RRGGGGCG 5.56 3.32684 5.90186
GSTGDGYG 13.84 10.2285 5.89983
GGRTTTTY 7.74 5.07793 5.68562
DCCGHACG 2.12 0.875041 5.64907
AGDWCARA 11.92 8.60993 5.48018
CWTCSTRB 15.68 11.9096 5.39472
GGSKKAGG 9.9 6.90233 5.33548
AACBAYMT 6.5 4.11786 5.16885
GCGMAGYS 6.2 3.88176 5.13251
TCCGGKYC 3.62 1.91693 5.11334
ASAGAMRS 20.42 16.2279 5.01596
TTTKTTTC 6.64 4.2523 4.87695
CGTDGSYS 9.28 6.43429 4.77765
WCRRTGCH 11.68 8.48461 4.73269
WWACNATR 11.68 8.48551 4.72449
GGGKCGTG 2.14 0.918506 4.71045
GTSBGTGY 8.8 6.04524 4.63814
SGAKWCGV 5.5 3.36749 4.60545
TSBCTMAG 11.9 8.69587 4.54383
CCTYCGVG 5.58 3.4363 4.51861
TGWWYKVA 24.06 19.6744 4.38447
KSDYACTG 17.76 13.909 4.36347
DGGCYCCG 6.68 4.32547 4.35638
KSMCCTGG 13.6 10.2024 4.35026
RRWGCCAR 18.74 14.8055 4.29564
CGRCSGDG 5.72 3.57171 4.1692
STACTTMV 6.24 3.99221 4.08877
GACAGVTR 6.92 4.5442 4.06051
WVCGTCGY 2.62 1.27415 3.75433
AMKCACYK 11.72 8.6322 3.7335
ASTAVWTA 5.58 3.49804 3.66037
THCCGKCG 3.82 2.14472 3.59737
RRTTWCAR 16.04 12.4787 3.52426
GGCGGGHC 4.38 2.57708 3.44357
TCACTKWR 7.94 5.44617 3.3681
AADBRAGA 17.14 13.4938 3.35223
GARCGSCG 2.76 1.39077 3.31335
CMATARAD 8.98 6.32987 3.27115
KTCYYAGV 24.56 20.3428 3.17954
RGWCMVAG 21.16 17.2031 3.09927
TGCGHGCG 2.12 0.963144 3.09248
TASAHASW 14.12 10.8336 3.00744
CAYGCRCG 2.72 1.37756 2.98783
CRAATGMV 6.56 4.34367 2.95082
GWGCMWGS 17.38 13.7731 2.9305
CSTCGGSK 4.92 3.03929 2.79855
TGWAWSTG 8.36 5.85728 2.75989
TACTTCCG 1.28 0.452442 2.71925
AACCCMAN 8.12 5.66329 2.6774
TRRDGACR 15.24 11.8808 2.66751
CWGCCTKG 8.88 6.31352 2.60517
TGHAAYYY 20.0 16.23 2.51929
GMCTYKGH 20.58 16.7717 2.47227
CSRASGGV 12.24 9.24916 2.39764
TTTTKAAW 6.64 4.4573 2.39676
GMGCSGAG 4.42 2.67716 2.38541
CAKCTHKG 12.6 9.57055 2.36703
ARTKMGWW 11.52 8.62564 2.32755
ATHYGATC 2.08 0.969396 2.23446
RACGSTVS 6.56 4.41553 2.12497
MAGRCAGN 22.18 18.3114 2.12463
ATWTRMAA 6.98 4.76331 2.1218
AAAYAKRA 10.76 7.98992 2.09601
AAMMTARA 7.82 5.46946 2.08493
TAVTTAAB 4.48 2.74471 2.08292

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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