Task #3640 - 55f25cfd Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 10 minutes (635sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) GGGRMTTY 22.18 8.74839 171.294 CGCABGCG 7.14 1.01044 166.456 GGGHGGRG 19.46 7.70983 145.323 GAAABYMC 25.34 12.0523 135.61 GCGMABGC 8.96 2.07762 132.485 AAKYCCCH 24.06 11.8157 117.258 TKAGTCAB 11.66 4.16184 96.7372 TGACTMAB 11.18 4.0538 89.5965 GGGGHGGG 11.04 4.02934 87.2535 GGCGKRGC 9.5 3.18936 84.8363 AANHGAAA 20.7 10.7322 83.5588 GGAAABYC 17.74 8.84009 76.9759 TRCGCAYG 4.16 0.767439 72.3433 CGKWMGYS 12.94 5.687 71.8734 TKKGGTTW 14.46 6.81861 69.2472 RCTTMCGG 6.5 2.01687 62.1685 CGRRKCSG 9.44 3.81285 59.39 KCSGDKCG 10.54 4.67104 54.9141 CGRNGRCG 9.84 4.2146 54.7696 AACYAYAR 10.2 4.46596 54.3217 AAAWMAAA 13.14 6.54871 52.8448 RGSGDCGG 12.1 5.87004 51.4468 AWBSAAAB 28.8 19.1166 51.2594 TTCRBTTY 13.64 7.10701 48.4295 GCGDNCGD 12.1 6.02803 47.6645 CTTMCGGB 7.7 3.08651 47.1546 TBGYTHKG 26.4 17.6772 43.0165 TCRBTWHC 21.86 13.9321 41.941 TSGAAABY 15.14 8.63086 40.6453 TRSTTWSH 35.34 25.7803 40.5208 WAWGCWAH 15.64 9.09155 39.3544 ADCVAABV 37.36 27.8007 38.6498 CGANCGHV 6.78 2.77003 38.5557 AKTCMCYD 24.98 16.8266 38.3225 GCGNNCGG 10.24 5.13657 37.6689 GCASGYGC 7.3 3.19131 35.8869 WTRMWTAV 22.62 15.1458 34.1415 DTCCCCWD 24.24 16.5897 33.3994 GAGTCAYN 10.56 5.58093 33.0443 ASYGAAAS 9.14 4.56571 32.868 DCGMDYCG 9.22 4.62972 32.7025 CGNDCSGG 11.26 6.1273 32.4603 AAAGYACC 4.22 1.41344 32.1385 ACHAYRRA 16.78 10.467 31.8733 GGAAKYSS 18.96 12.3566 30.457 CGKSHGCG 8.76 4.43425 29.7422 RTCACRTG 5.52 2.25455 29.6025 DWGCBAAB 24.16 16.9136 28.8193 GKVBGTGG 19.74 13.1409 28.7412 AWTNRATA 8.64 4.40735 28.4441 ASGAWSBR 23.96 16.8108 28.0252 RTBSKTWG 20.1 13.5394 27.5617 GGWGGRGS 15.46 9.74425 26.8687 TTGRWTKH 17.08 11.0946 26.5386 TVCSHAGV 34.94 26.8571 26.1975 ASSSABVG 37.9 29.6398 25.9358 GACTCABN 13.18 7.99944 25.644 CGBYDCGG 9.02 4.84371 25.1019 AADTACCH 8.54 4.52669 24.4048 TAARAHWA 12.32 7.41759 24.1417 GKCGNRCG 7.42 3.74253 23.9377 ATRAAWYA 8.98 4.90594 23.3195 GCYAWSKK 20.26 14.0729 22.9168 GCGDCSCG 5.36 2.3787 22.7684 GCGKRGCY 9.78 5.54642 22.5904 RTGCGCAS 4.22 1.66472 22.413 TDSSWWCK 32.64 25.2198 21.939 RCTTCCKY 13.08 8.19451 21.5842 GCHYYGDG 31.18 23.9239 21.5486 TKRGHAAB 31.64 24.3697 21.3412 TDYRAWTR 22.52 16.187 21.2724 AAWSRAMA 18.88 13.0782 20.8245 GGASSGHG 11.16 6.73845 20.5292 GMGKMGGG 10.04 5.86704 20.5135 AYGTVAYY 14.56 9.47908 20.497 AABHBGAW 29.9 22.9031 20.2497 WGGGYRKG 19.26 13.4655 20.1465 GCGRYGSC 7.32 3.89674 19.1646 GABCGWBS 9.28 5.37756 18.9353 AAAAYCCM 8.24 4.59288 18.8685 AWAMAAAB 18.4 12.8669 18.6343 TAMVTAWH 14.02 9.19474 18.4467 AAKAHMAA 13.36 8.69195 17.9369 ASTGCGCA 2.78 0.938944 17.8045 RCCNHAGS 35.82 28.737 17.442 GRWSGCDG 22.34 16.4319 17.3186 KRCCTKGV 24.42 18.2931 17.2216 RRMSGAAG 16.28 11.2193 16.8701 WAGCVAYR 13.0 8.53626 16.1594 KCGMKRCG 6.22 3.24736 16.1541 ACGCATGC 1.14 0.185361 16.1281 WCCSHDCC 27.42 21.1722 15.7741 RTSGHTDY 28.84 22.4778 15.7155 GBCTHCGR 8.86 5.25357 15.6786 TGWBGTMA 11.14 7.06521 15.5742 RCCAATCR 3.16 1.21808 15.5424 TCSGMCCS 5.26 2.62812 14.784 TTRCWCAW 7.84 4.56357 14.1272 GWGGBMGG 15.86 11.1156 14.1252 TGTSKDTG 11.92 7.82577 13.943 AHMTRMTA 12.76 8.52497 13.877 AGCRABNM 24.34 18.6288 13.7136 RTKACVTH 18.1 13.1263 13.3592 GGGYHGGG 9.08 5.62958 12.6235 DDCTRAGH 34.54 28.2918 12.0005 TKVCMTTK 23.16 17.777 11.9734 GCGRDCGC 3.64 1.6385 11.9376 GTCMCTDV 16.2 11.6248 11.9281 CWCYGWRB 31.22 25.1949 11.8651 RTTKMTAB 12.64 8.61011 11.737 CGYRRCGK 6.5 3.70015 11.5063 AATYCHAD 11.86 7.9863 11.4246 AYGGYRDC 11.4 7.60939 11.3686 CSKMCCGD 10.2 6.63746 11.1985 THTCBWTV 28.96 23.2014 11.097 CGCTYGCG 1.7 0.501142 11.0213 GRGAHVGR 28.48 22.7934 10.8365 GVAGASMG 14.4 10.1895 10.8006 RGYABSTG 22.36 17.2293 10.5838 AGRYGGVG 13.36 9.34444 10.3691 AYHAASAH 21.88 16.8332 10.294 AGAVMKRA 22.44 17.3549 10.1664 RWTTTATD 11.68 7.95276 10.1002 GGATTCCC 2.12 0.750987 10.0681 GSSGRCCG 5.92 3.35528 9.91331 CTGSVWAS 23.62 18.4605 9.89498 GGCMDCSG 10.14 6.69447 9.8885 CSATCTBN 13.38 9.41185 9.85004 CSGRGTCS 4.56 2.36156 9.8144 GCMCKRCS 11.06 7.46417 9.77891 AGCSTNBG 16.74 12.3346 9.68825 TMRTAAAW 7.04 4.22956 9.63809 DRBCTKAG 26.92 21.5303 9.5723 KGGCGRCG 4.18 2.11087 9.41019 ATWDYRAA 14.56 10.4879 9.22533 GGGMGGGM 8.94 5.77279 9.17723 CKGATTGG 2.26 0.867031 8.79145 TMCCCWWV 17.1 12.7807 8.55862 ACYTKGMW 15.32 11.2218 8.53562 TTKCCCHW 18.14 13.7058 8.52452 CTTWGWWV 15.4 11.3063 8.40331 AAWCSAHC 6.1 3.58694 8.33595 GACCGSAR 3.24 1.51458 8.18942 TASMKTTV 11.48 7.96349 8.16138 TCRVRTKH 31.78 26.2885 8.10781 AAMRABAA 13.72 9.9203 7.73396 ATAKKTAH 5.64 3.27494 7.69452 GGCGRCGH 4.78 2.63452 7.60146 ACTGDAWW 11.08 7.68927 7.49717 AKYCATHH 20.56 16.0335 7.29526 GRTTKCMY 15.82 11.8053 7.26239 TRAATYAY 6.14 3.69607 7.12282 ACRSHTRC 13.6 9.89112 7.04398 WGCTDNGG 23.08 18.3856 6.88544 TAYGAWWY 5.36 3.12997 6.57912 CCCCADVS 20.08 15.699 6.56383 RGGVYTSG 19.84 15.484 6.54905 TGCRCSTG 5.26 3.0567 6.53095 DAAMTACV 10.04 6.92009 6.38132 TTAAVAWA 6.76 4.23709 6.35253 TRGRATTH 8.88 5.96779 6.22766 CGKDAHCG 3.94 2.09622 6.14528 TRMAATAB 7.84 5.13637 5.966 RRGGGGCG 5.56 3.32684 5.90186 GSTGDGYG 13.84 10.2285 5.89983 GGRTTTTY 7.74 5.07793 5.68562 DCCGHACG 2.12 0.875041 5.64907 AGDWCARA 11.92 8.60993 5.48018 CWTCSTRB 15.68 11.9096 5.39472 GGSKKAGG 9.9 6.90233 5.33548 AACBAYMT 6.5 4.11786 5.16885 GCGMAGYS 6.2 3.88176 5.13251 TCCGGKYC 3.62 1.91693 5.11334 ASAGAMRS 20.42 16.2279 5.01596 TTTKTTTC 6.64 4.2523 4.87695 CGTDGSYS 9.28 6.43429 4.77765 WCRRTGCH 11.68 8.48461 4.73269 WWACNATR 11.68 8.48551 4.72449 GGGKCGTG 2.14 0.918506 4.71045 GTSBGTGY 8.8 6.04524 4.63814 SGAKWCGV 5.5 3.36749 4.60545 TSBCTMAG 11.9 8.69587 4.54383 CCTYCGVG 5.58 3.4363 4.51861 TGWWYKVA 24.06 19.6744 4.38447 KSDYACTG 17.76 13.909 4.36347 DGGCYCCG 6.68 4.32547 4.35638 KSMCCTGG 13.6 10.2024 4.35026 RRWGCCAR 18.74 14.8055 4.29564 CGRCSGDG 5.72 3.57171 4.1692 STACTTMV 6.24 3.99221 4.08877 GACAGVTR 6.92 4.5442 4.06051 WVCGTCGY 2.62 1.27415 3.75433 AMKCACYK 11.72 8.6322 3.7335 ASTAVWTA 5.58 3.49804 3.66037 THCCGKCG 3.82 2.14472 3.59737 RRTTWCAR 16.04 12.4787 3.52426 GGCGGGHC 4.38 2.57708 3.44357 TCACTKWR 7.94 5.44617 3.3681 AADBRAGA 17.14 13.4938 3.35223 GARCGSCG 2.76 1.39077 3.31335 CMATARAD 8.98 6.32987 3.27115 KTCYYAGV 24.56 20.3428 3.17954 RGWCMVAG 21.16 17.2031 3.09927 TGCGHGCG 2.12 0.963144 3.09248 TASAHASW 14.12 10.8336 3.00744 CAYGCRCG 2.72 1.37756 2.98783 CRAATGMV 6.56 4.34367 2.95082 GWGCMWGS 17.38 13.7731 2.9305 CSTCGGSK 4.92 3.03929 2.79855 TGWAWSTG 8.36 5.85728 2.75989 TACTTCCG 1.28 0.452442 2.71925 AACCCMAN 8.12 5.66329 2.6774 TRRDGACR 15.24 11.8808 2.66751 CWGCCTKG 8.88 6.31352 2.60517 TGHAAYYY 20.0 16.23 2.51929 GMCTYKGH 20.58 16.7717 2.47227 CSRASGGV 12.24 9.24916 2.39764 TTTTKAAW 6.64 4.4573 2.39676 GMGCSGAG 4.42 2.67716 2.38541 CAKCTHKG 12.6 9.57055 2.36703 ARTKMGWW 11.52 8.62564 2.32755 ATHYGATC 2.08 0.969396 2.23446 RACGSTVS 6.56 4.41553 2.12497 MAGRCAGN 22.18 18.3114 2.12463 ATWTRMAA 6.98 4.76331 2.1218 AAAYAKRA 10.76 7.98992 2.09601 AAMMTARA 7.82 5.46946 2.08493 TAVTTAAB 4.48 2.74471 2.08292 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete