Task #3653 - 27260692 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 8 minutes (497sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TTKVTTTY 32.4972 20.7796 64.4225 RGKGMKSG 18.3203 9.74025 58.3406 WTTBRTTK 36.551 24.7768 58.2647 GMACKMAS 10.5935 4.58476 51.3512 TGHMTBTR 41.0526 29.8439 46.961 GGGWNSGG 9.85442 4.31686 45.5722 TKAGKTMN 24.3897 15.4183 44.5885 GGMGKBVG 15.8119 8.69701 42.9134 GCCRGGGC 3.09071 0.607616 41.9057 GRSKNASG 24.3001 15.5626 41.7084 TDGCYYWG 25.7111 17.0213 38.3491 WAMSHAAS 34.3113 24.8484 35.3243 TTRTTTTD 19.4401 12.087 34.7368 CSRGKGCB 9.07055 4.2803 33.5867 TTRSVTWY 33.7066 24.6116 32.3222 GBGSTBGS 16.1926 9.69818 31.6962 TCTGHMTC 10.4367 5.33565 31.5951 TTTVTTTR 17.6484 10.9366 30.6757 AMCTMASN 23.7178 15.9982 30.5333 GYSTMTGY 15.3639 9.14389 30.2399 TYSWTTSB 39.2609 29.9616 30.0433 AGYTMSAG 10.1904 5.26985 29.4205 AAYVAADA 30.1456 21.718 29.4171 GKGSGYGG 4.92721 1.78788 28.9301 CYHTGHCB 33.7962 25.0682 28.8307 TBGAACTC 4.61366 1.61369 28.6643 YCACYDWS 31.2206 22.7735 28.5257 AYWTACRT 8.44345 4.08027 28.4076 ATTTKVWT 23.449 16.1046 26.8676 GMTBGMYY 23.5834 16.2851 26.1863 CSYKSGCK 8.28667 4.08314 26.0151 AGHGRMAG 17.8499 11.6093 24.264 ACRCRCAC 5.68869 2.40924 24.2172 WTATBTAY 16.7301 10.7225 23.8318 TABGTABB 12.9003 7.66769 23.5888 TACMKWKH 31.5118 23.6298 23.2252 GSMYTYGR 16.6405 10.7085 23.1075 RCTYASNR 35.9239 27.6978 23.0773 GTTCVAGG 4.09854 1.47684 22.8947 GACYMGGC 3.15789 0.960383 22.661 TTKWCTTW 17.1333 11.1683 22.4697 DTCSWTYS 23.0683 16.2258 22.2731 ASGSWBGC 10.7951 6.1397 22.1028 TRKCTGTC 6.11422 2.77231 22.0453 TTBARTTH 24.009 17.085 21.8914 TGSBTNCY 37.8052 29.8721 19.8542 CRCHCACV 13.729 8.60991 19.752 YTTKAATB 18.3427 12.4592 19.3745 GGHMGVRG 21.3214 15.0434 19.0441 TGGTCKAC 2.19485 0.552266 18.9998 MRYCACCR 9.72004 5.52099 18.9745 TCKWBCTY 20.7391 14.5952 18.5094 GCGYDCVC 2.82195 0.880138 18.3512 TWTRCMTW 18.5442 12.8196 17.4335 ACYVWRBC 36.0134 28.6308 16.6802 AYRCRTAC 4.86002 2.16134 16.6678 AAKSHMAG 27.9731 21.2555 16.3812 WCSVDCSC 14.0649 9.16573 16.3406 CAKKGHYK 35.2744 28.0418 15.9551 TGCTSGGA 3.69541 1.44818 15.9368 RGMTSGCB 11.1982 6.9104 15.5532 TAATCCCA 2.5308 0.790465 15.5127 GGKCTACR 3.24748 1.2148 14.7819 RCRTRGYG 6.58455 3.48429 14.0246 CGAVKCSR 2.23964 0.673355 13.8979 CSKGGCBB 11.131 6.99084 13.8458 GTTYWGTK 11.4222 7.25795 13.4437 AGTRVKTR 15.4983 10.6315 13.4407 GRAGMNVG 33.0571 26.3473 13.3636 TTCRAGGC 2.59798 0.88746 13.0736 CRTWTRCR 8.24188 4.78434 13.0116 GDGSKSMG 20.9854 15.4355 12.9082 TSSGDDSG 16.1702 11.2981 12.5063 WYAGGGTY 7.97312 4.63486 12.1783 DMSMAAGK 33.7738 27.2731 11.6806 TCRKYKHC 21.3214 15.8965 11.5782 TTAMTTWK 12.1613 8.037 11.4238 GCACMBRC 8.35386 4.98838 11.3224 GCTRRGMH 19.4849 14.3133 11.2569 TCBNWCCW 33.2139 26.8431 11.0742 RYCACCAH 10.9071 7.04637 11.0114 AYYYACTY 14.3561 9.91425 10.9842 WYBSTAAS 23.5834 18.0038 10.9363 TMCSBWCC 9.16013 5.65708 10.8433 GCYRTCYY 12.2508 8.18055 10.6762 AMCAAHCA 8.57783 5.22522 10.4839 GWMYTKGR 24.6809 19.0653 10.4315 ATTKYTDT 24.7256 19.113 10.3811 TTTTTAAW 10.2576 6.58466 10.2517 TGBTTWGK 14.692 10.2878 10.143 TAYTTTVW 21.523 16.2677 10.0939 DKCTRYCK 25.2408 19.6434 9.94435 CTWTGWAB 12.542 8.50282 9.84647 TGNGTWTG 9.89922 6.33841 9.74043 GGTGGBGS 4.52408 2.24739 9.5971 GCRGSYVG 9.16013 5.76051 9.54503 ACVWWTRC 13.7738 9.61907 9.08727 GGGATTRM 3.96417 1.88585 9.07441 AAYGAATK 4.16573 2.02527 9.04703 AKCANTBR 32.0493 26.0852 9.00181 MCYAAGKD 16.8421 12.3105 8.6799 CTAMCSAS 4.45689 2.2511 8.58278 CMCSGMSS 3.85218 1.84622 8.27157 TASGKTTK 5.26316 2.85613 8.13446 GSCRNGCG 1.92609 0.642077 8.07676 RYGRMTYV 30.1904 24.5143 7.9837 CRGGCTVG 4.23292 2.12752 7.9126 CWGCSTKG 7.72676 4.75563 7.86916 GGTACTGG 1.54535 0.44693 7.75855 TAWYKTTR 17.1109 12.6647 7.72305 TGYAABYC 9.67525 6.34656 7.57906 TTRTYGWW 10.9295 7.41352 7.25241 KRHCTTAG 8.1299 5.14246 7.04282 GVGYRCTG 6.98768 4.25415 6.83779 TAHMTATG 7.77156 4.87362 6.83331 GAGAYAGG 3.44905 1.63769 6.82358 TTCKKTWW 21.0078 16.2772 6.701 TGSCKYRC 6.78611 4.11002 6.65966 TMGACCMG 2.37402 0.954292 6.40643 GWKCCACC 3.80739 1.9067 6.37013 YSAMTTCB 15.4535 11.3906 6.31274 TKTTKTTM 21.2094 16.5523 6.07751 CTTBAKYK 22.2844 17.5446 5.97334 CTDHCCTR 16.4614 12.3306 5.8925 GGHTVSRG 17.2452 13.0272 5.87077 ASGGTYWS 8.91377 5.89103 5.75751 TTTVKSTW 29.3617 24.1288 5.71737 ATRCDCAC 5.93505 3.53323 5.51924 TTAAAAAW 9.47368 6.37567 5.51463 AATKYTAW 12.5196 8.95084 5.46933 KKACYAWG 10.9071 7.58843 5.37927 KGGASKMG 7.92833 5.12765 5.32378 WVAGYGAG 9.24972 6.21976 5.21372 TTTRTYGW 8.1523 5.32497 5.15007 ACAKWGWA 11.8253 8.39424 5.14291 GGCTAYRC 2.93393 1.36607 5.11077 TCYGHCTK 11.1086 7.79154 5.07979 TCKCBMKC 12.3852 8.88188 5.07241 ACYAGGCY 4.47928 2.46807 4.97486 ATGKKYGT 8.51064 5.64673 4.83859 RSGADYBG 21.3438 16.8666 4.83711 GGACAGCS 1.9037 0.723107 4.72885 ARGKNMGG 16.9989 12.9812 4.63255 CCKRRTCK 5.73348 3.44667 4.56964 GAMYCBAG 7.54759 4.88996 4.52926 TGTGCGYV 1.8589 0.702915 4.51813 KCMSTGGR 13.617 10.0509 4.24003 TAKYATTK 10.4591 7.33673 4.21472 TCTMDGYB 27.0549 22.2682 4.07476 MACSWWCS 8.24188 5.50544 4.00576 CGNGCGBR 1.11982 0.309235 3.99222 AKCTGAST 5.17357 3.06008 3.93965 TTTAATCC 2.21725 0.946613 3.86538 GRTSSCCG 1.54535 0.541645 3.77877 WGGGCTAC 2.21725 0.953298 3.68863 TYSRTTTG 6.8757 4.4295 3.59865 AMBATCDA 11.0414 7.91497 3.49706 GTSCMTGB 9.87682 6.94203 3.32941 ATTKYAWA 14.0649 10.5778 3.23247 GCTCBKSC 7.43561 4.93681 3.02996 GAGBDSGG 9.27212 6.46573 3.01645 TWAYGAAW 6.80851 4.45914 2.66436 AYDCRTKC 11.355 8.30422 2.52314 GSCMASGS 7.4804 5.02528 2.49738 CKCTTHCB 12.7212 9.5017 2.46663 CAATGGWG 3.02352 1.55653 2.44257 KAGGCCAK 5.0168 3.05061 2.42337 TDACTTAM 4.90482 2.97025 2.33337 TGSATAYA 5.71109 3.60673 2.31237 GWMSGDMG 8.84658 6.18718 2.28726 ATRAMCAW 10.2576 7.39658 2.21371 ATGRATGR 5.15118 3.17423 2.18532 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete