Task #3658 - 4d8a3ded Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 8 minutes (484sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TTGCNHMA 85.8 27.8776 1585.76 TGCDHMAY 64.86 24.9864 757.275 RTTGCDHM 61.62 27.7545 532.47 RYGCAAYN 40.32 19.0595 253.476 TTWCMYAA 21.48 7.07672 223.033 GCWYAAYN 33.0 18.0791 130.939 TDCMYAAB 39.12 23.3734 125.651 YGCAATNN 39.74 24.2509 119.116 YGAMCTYD 21.08 10.2725 101.318 GDMCTYKG 28.4 16.2668 92.4809 TRYGYAMG 14.34 5.95092 92.2589 GGGHGGRG 11.12 3.98551 90.9086 GGGGHGGG 6.62 1.74254 80.7444 RAGKTCAN 23.24 12.8375 79.8511 TDTGWAAY 19.34 9.90273 79.4799 GCRATMNN 39.54 26.9927 72.3582 GGVGGHGG 10.64 4.34669 66.8937 GCRWCAYN 27.12 16.9098 62.8361 TRTYKAYH 29.16 18.727 61.2004 TYBRTYTY 37.52 26.6128 53.6686 GGDCRDDG 36.22 25.4989 52.9793 RMCYTTGD 27.04 17.7959 48.75 GYGWAAYN 22.14 14.0319 43.8539 CYGYCYYB 38.42 28.4962 41.5802 ACYTTGDH 19.18 11.8428 40.3804 GGHRGGGV 19.16 11.8273 40.3697 RWHCRAAB 33.3 23.9836 40.0269 RTMRATAN 15.66 9.17178 38.2483 WTYKATYK 20.72 13.2701 37.9321 ATTDMCYA 13.84 7.84978 36.7228 CBTGGCHB 31.46 22.7708 35.2332 AAAVAAAA 8.7 4.1982 34.2608 TDKAMTTW 17.74 11.1866 32.7485 RHGCAMGM 18.7 12.0344 31.9015 RRGGYHGR 37.92 29.0654 31.2762 WWTRTTTR 19.0 12.3776 30.6199 VCKYGGYN 33.94 25.9024 26.4961 CGMSBSCG 3.2 0.983118 26.3432 TRTTYGTH 9.86 5.46677 25.124 CWKAGHYR 37.9 29.7494 24.9952 RDCTCNGY 35.1 27.1748 24.6946 TCCDBCCY 19.48 13.3249 23.8446 GGSWBMGR 31.96 24.4134 23.5322 AAKTCHAN 19.34 13.2403 23.4436 TTHYAAAD 19.88 13.9112 21.0977 TTKTTTTM 7.98 4.29376 20.8718 CWMTGYYK 35.24 27.7899 20.6081 TCGCAAYN 4.3 1.78955 19.9685 CRGYGDCB 16.62 11.2464 19.8472 GCYMMGDG 21.24 15.2112 19.8141 CRATMSBD 23.82 17.4943 19.6728 KRRTKKTG 31.92 24.867 19.3202 AWWVRTTA 13.32 8.67952 17.6752 DTGKTTRH 31.82 25.0392 17.1829 TGBCYTHK 35.78 28.7571 17.0075 MYCKWCCB 20.28 14.6829 16.714 RGABGRMG 16.1 11.0996 16.5045 WWMAAAAY 16.56 11.5218 16.1659 GMCBTRGN 27.72 21.4441 15.7882 GAHSYMAG 21.44 15.8036 15.7555 YCWTMYCB 28.72 22.4125 15.3583 TTWCRWCA 8.1 4.68962 15.3354 CRKGGWBR 28.04 21.8054 15.2315 GCGGSGCN 2.94 1.1012 15.0088 TTTRRAAA 7.34 4.17366 14.286 STCVSTGB 27.84 21.7955 13.8654 TGKTTKSW 25.18 19.4649 13.1011 AGBSRGSG 15.12 10.5879 13.0324 RAKCRATS 11.92 7.92916 12.682 TWCHTRKY 30.28 24.2446 12.3967 TKAVHTAK 18.9 13.9366 12.3401 GYRGGHGG 10.16 6.52249 12.2566 CGHAASVS 10.32 6.66793 12.0536 GRYGGHGM 11.26 7.43824 12.0351 GGHAGSMG 11.86 7.95293 11.8124 RYDCKTRS 34.86 28.6296 11.7617 ADWCCAWV 24.56 19.1288 11.318 GMRAYGBY 25.7 20.1863 11.1856 TTCNSTYY 29.18 23.4059 11.0945 YGAMWTCN 16.62 12.0843 11.0192 RNSAAMGG 23.3 18.1054 10.385 TGGGSGDG 6.08 3.48395 9.77747 CBYAGCMB 25.84 20.5102 9.751 ACCSYRSS 13.46 9.51277 9.5191 CGCKSCGB 1.92 0.651903 9.47918 TMWCYGWN 34.26 28.4367 9.33133 WMCKRASY 26.36 21.1627 8.53717 GMGRHGGG 8.2 5.23595 8.39355 CTTATCTN 3.52 1.70109 8.28449 GSCGVSCG 2.08 0.774257 8.26761 CDKCSTRG 15.8 11.6747 8.23768 AKCBTRGB 22.2 17.4003 8.17951 MANTCACB 17.8 13.4614 8.05156 TGGGGWBR 12.54 8.88875 7.90333 WTTCWKTY 20.04 15.4967 7.80241 ACRCMYAC 7.48 4.70952 7.72324 TTRTYTTK 10.82 7.4575 7.63433 ATGDYGAM 7.32 4.58941 7.62334 YRTMWCCN 28.26 23.0746 7.55727 TYHRTWCY 26.56 21.5037 7.49074 RRCYMTGR 31.98 26.58 7.47537 TCKTWSDH 26.82 21.762 7.3791 CGGHGCSS 2.26 0.918005 7.06403 GGGMGGGM 4.78 2.66821 6.99173 CKGSGDAB 16.06 12.091 6.6454 TCYTGKYY 20.62 16.182 6.6087 AGCRGHGD 14.54 10.786 6.37098 GTMAYYYB 29.52 24.4684 6.22872 CKGBGSTK 18.98 14.7553 6.20066 WCATTYBD 28.58 23.5973 6.16121 GCGMSCGS 1.5 0.499376 5.96165 GDTKAMAK 20.12 15.8551 5.70609 GGHTGGGG 4.28 2.37829 5.52768 TCVGTGDB 16.12 12.2931 5.45287 AGACYTTG 3.58 1.87315 5.41586 TTGAGWWA 4.6 2.6316 5.28494 AAKWAAAH 12.88 9.47664 5.16043 TGCRWCMG 7.68 5.07926 5.08127 GCTWCATH 5.18 3.09439 4.96472 GCBGSGGM 6.3 3.97991 4.88084 TNGAYTMK 13.44 10.002 4.84781 AATRTYGA 3.42 1.79743 4.62103 GAGSDRMG 17.76 13.8782 4.58347 TTGMAATM 7.24 4.7709 4.47101 ARTBCTKD 34.12 29.1448 4.45771 RRCYKKAG 24.3 19.9086 4.31475 TNDAATTC 6.7 4.3524 4.2221 GTGGGGBD 8.2 5.5872 4.18297 AVATRAMC 11.04 8.00336 4.09134 AAHRAAHG 15.66 12.0621 4.08465 MTGACCTR 5.76 3.61331 4.03395 ACYCRVVG 18.16 14.3458 3.8408 GAGSGMGV 7.62 5.14063 3.80404 AATVYTAN 13.76 10.4195 3.73903 TRRGMAMG 13.7 10.3772 3.65491 MTCDCCCB 11.8 8.72094 3.56918 GCCTSBGB 18.78 14.9515 3.55448 ACNYAGMH 33.86 29.0754 3.52227 GCACAAGN 6.5 4.25864 3.38232 GGKRGSYG 11.0 8.05819 3.29366 TRGGYAAC 5.06 3.13766 2.96368 TGTGBKTG 12.98 9.83738 2.90126 RCKCTGHS 20.32 16.4666 2.87383 MCTKCCKR 13.68 10.4646 2.84228 TGMCCYGD 12.56 9.47995 2.80019 TSRMCTHC 16.38 12.9028 2.69694 WARCATTY 8.38 5.88381 2.66357 TWMTYYGW 17.32 13.7609 2.64907 WTBGATYC 6.08 3.99034 2.49992 CCBMGYGS 9.02 6.47875 2.17312 TASHTACB 5.12 3.25216 2.05849 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete