Motif finder

Task #3658 - 4d8a3ded

Status Start End Updated Duration Sequences Logs Task Bundle
finished 4 months ago 4 months ago 4 months ago 8 minutes (484sec) Positive, Negative Float, Integer, Tomtom Open

Results

Motif Occurrence(%) Expected(%) -log10(Binomial prob)
TTGCNHMA 85.8 27.8776 1585.76
TGCDHMAY 64.86 24.9864 757.275
RTTGCDHM 61.62 27.7545 532.47
RYGCAAYN 40.32 19.0595 253.476
TTWCMYAA 21.48 7.07672 223.033
GCWYAAYN 33.0 18.0791 130.939
TDCMYAAB 39.12 23.3734 125.651
YGCAATNN 39.74 24.2509 119.116
YGAMCTYD 21.08 10.2725 101.318
GDMCTYKG 28.4 16.2668 92.4809
TRYGYAMG 14.34 5.95092 92.2589
GGGHGGRG 11.12 3.98551 90.9086
GGGGHGGG 6.62 1.74254 80.7444
RAGKTCAN 23.24 12.8375 79.8511
TDTGWAAY 19.34 9.90273 79.4799
GCRATMNN 39.54 26.9927 72.3582
GGVGGHGG 10.64 4.34669 66.8937
GCRWCAYN 27.12 16.9098 62.8361
TRTYKAYH 29.16 18.727 61.2004
TYBRTYTY 37.52 26.6128 53.6686
GGDCRDDG 36.22 25.4989 52.9793
RMCYTTGD 27.04 17.7959 48.75
GYGWAAYN 22.14 14.0319 43.8539
CYGYCYYB 38.42 28.4962 41.5802
ACYTTGDH 19.18 11.8428 40.3804
GGHRGGGV 19.16 11.8273 40.3697
RWHCRAAB 33.3 23.9836 40.0269
RTMRATAN 15.66 9.17178 38.2483
WTYKATYK 20.72 13.2701 37.9321
ATTDMCYA 13.84 7.84978 36.7228
CBTGGCHB 31.46 22.7708 35.2332
AAAVAAAA 8.7 4.1982 34.2608
TDKAMTTW 17.74 11.1866 32.7485
RHGCAMGM 18.7 12.0344 31.9015
RRGGYHGR 37.92 29.0654 31.2762
WWTRTTTR 19.0 12.3776 30.6199
VCKYGGYN 33.94 25.9024 26.4961
CGMSBSCG 3.2 0.983118 26.3432
TRTTYGTH 9.86 5.46677 25.124
CWKAGHYR 37.9 29.7494 24.9952
RDCTCNGY 35.1 27.1748 24.6946
TCCDBCCY 19.48 13.3249 23.8446
GGSWBMGR 31.96 24.4134 23.5322
AAKTCHAN 19.34 13.2403 23.4436
TTHYAAAD 19.88 13.9112 21.0977
TTKTTTTM 7.98 4.29376 20.8718
CWMTGYYK 35.24 27.7899 20.6081
TCGCAAYN 4.3 1.78955 19.9685
CRGYGDCB 16.62 11.2464 19.8472
GCYMMGDG 21.24 15.2112 19.8141
CRATMSBD 23.82 17.4943 19.6728
KRRTKKTG 31.92 24.867 19.3202
AWWVRTTA 13.32 8.67952 17.6752
DTGKTTRH 31.82 25.0392 17.1829
TGBCYTHK 35.78 28.7571 17.0075
MYCKWCCB 20.28 14.6829 16.714
RGABGRMG 16.1 11.0996 16.5045
WWMAAAAY 16.56 11.5218 16.1659
GMCBTRGN 27.72 21.4441 15.7882
GAHSYMAG 21.44 15.8036 15.7555
YCWTMYCB 28.72 22.4125 15.3583
TTWCRWCA 8.1 4.68962 15.3354
CRKGGWBR 28.04 21.8054 15.2315
GCGGSGCN 2.94 1.1012 15.0088
TTTRRAAA 7.34 4.17366 14.286
STCVSTGB 27.84 21.7955 13.8654
TGKTTKSW 25.18 19.4649 13.1011
AGBSRGSG 15.12 10.5879 13.0324
RAKCRATS 11.92 7.92916 12.682
TWCHTRKY 30.28 24.2446 12.3967
TKAVHTAK 18.9 13.9366 12.3401
GYRGGHGG 10.16 6.52249 12.2566
CGHAASVS 10.32 6.66793 12.0536
GRYGGHGM 11.26 7.43824 12.0351
GGHAGSMG 11.86 7.95293 11.8124
RYDCKTRS 34.86 28.6296 11.7617
ADWCCAWV 24.56 19.1288 11.318
GMRAYGBY 25.7 20.1863 11.1856
TTCNSTYY 29.18 23.4059 11.0945
YGAMWTCN 16.62 12.0843 11.0192
RNSAAMGG 23.3 18.1054 10.385
TGGGSGDG 6.08 3.48395 9.77747
CBYAGCMB 25.84 20.5102 9.751
ACCSYRSS 13.46 9.51277 9.5191
CGCKSCGB 1.92 0.651903 9.47918
TMWCYGWN 34.26 28.4367 9.33133
WMCKRASY 26.36 21.1627 8.53717
GMGRHGGG 8.2 5.23595 8.39355
CTTATCTN 3.52 1.70109 8.28449
GSCGVSCG 2.08 0.774257 8.26761
CDKCSTRG 15.8 11.6747 8.23768
AKCBTRGB 22.2 17.4003 8.17951
MANTCACB 17.8 13.4614 8.05156
TGGGGWBR 12.54 8.88875 7.90333
WTTCWKTY 20.04 15.4967 7.80241
ACRCMYAC 7.48 4.70952 7.72324
TTRTYTTK 10.82 7.4575 7.63433
ATGDYGAM 7.32 4.58941 7.62334
YRTMWCCN 28.26 23.0746 7.55727
TYHRTWCY 26.56 21.5037 7.49074
RRCYMTGR 31.98 26.58 7.47537
TCKTWSDH 26.82 21.762 7.3791
CGGHGCSS 2.26 0.918005 7.06403
GGGMGGGM 4.78 2.66821 6.99173
CKGSGDAB 16.06 12.091 6.6454
TCYTGKYY 20.62 16.182 6.6087
AGCRGHGD 14.54 10.786 6.37098
GTMAYYYB 29.52 24.4684 6.22872
CKGBGSTK 18.98 14.7553 6.20066
WCATTYBD 28.58 23.5973 6.16121
GCGMSCGS 1.5 0.499376 5.96165
GDTKAMAK 20.12 15.8551 5.70609
GGHTGGGG 4.28 2.37829 5.52768
TCVGTGDB 16.12 12.2931 5.45287
AGACYTTG 3.58 1.87315 5.41586
TTGAGWWA 4.6 2.6316 5.28494
AAKWAAAH 12.88 9.47664 5.16043
TGCRWCMG 7.68 5.07926 5.08127
GCTWCATH 5.18 3.09439 4.96472
GCBGSGGM 6.3 3.97991 4.88084
TNGAYTMK 13.44 10.002 4.84781
AATRTYGA 3.42 1.79743 4.62103
GAGSDRMG 17.76 13.8782 4.58347
TTGMAATM 7.24 4.7709 4.47101
ARTBCTKD 34.12 29.1448 4.45771
RRCYKKAG 24.3 19.9086 4.31475
TNDAATTC 6.7 4.3524 4.2221
GTGGGGBD 8.2 5.5872 4.18297
AVATRAMC 11.04 8.00336 4.09134
AAHRAAHG 15.66 12.0621 4.08465
MTGACCTR 5.76 3.61331 4.03395
ACYCRVVG 18.16 14.3458 3.8408
GAGSGMGV 7.62 5.14063 3.80404
AATVYTAN 13.76 10.4195 3.73903
TRRGMAMG 13.7 10.3772 3.65491
MTCDCCCB 11.8 8.72094 3.56918
GCCTSBGB 18.78 14.9515 3.55448
ACNYAGMH 33.86 29.0754 3.52227
GCACAAGN 6.5 4.25864 3.38232
GGKRGSYG 11.0 8.05819 3.29366
TRGGYAAC 5.06 3.13766 2.96368
TGTGBKTG 12.98 9.83738 2.90126
RCKCTGHS 20.32 16.4666 2.87383
MCTKCCKR 13.68 10.4646 2.84228
TGMCCYGD 12.56 9.47995 2.80019
TSRMCTHC 16.38 12.9028 2.69694
WARCATTY 8.38 5.88381 2.66357
TWMTYYGW 17.32 13.7609 2.64907
WTBGATYC 6.08 3.99034 2.49992
CCBMGYGS 9.02 6.47875 2.17312
TASHTACB 5.12 3.25216 2.05849

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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