Task #103 - cd9cf65e Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 4 years ago 4 years ago 4 years ago 6 minutes (380sec) Positive, Negative Float, Integer, Open Results Motif positions Motif Occurrence(%) Expected(%) -log10(Binomial prob) GGGMGGDG 60.1307 3.47238 91.6861 GRGGSRGG 62.0915 4.6029 85.269 GGMGGRGM 55.5556 4.6029 70.5589 RGRGSHGG 74.5098 13.1844 66.0977 CCCHSCCB 63.3987 10.0605 56.8288 GSDGGGVG 62.7451 10.0605 55.6457 GGSBGGGN 66.0131 13.1844 50.6106 CCDCCCRS 50.3268 6.82448 47.2125 DGGGMRGR 62.0915 13.1844 44.1969 GMRGRGRV 78.4314 24.6343 43.4896 RGSKGGHG 60.7843 13.1844 42.1555 CCYCYBCN 76.4706 24.6343 40.4329 GMGGVGCB 52.9412 10.0605 39.3065 KCCHKCYB 83.6601 34.5776 35.0688 GRRGSCDS 72.549 24.6343 34.7327 GSGCSNGG 45.7516 8.99446 31.9381 CDGGGVRS 62.7451 19.1112 31.4839 GSTGSDGB 62.0915 19.1112 30.6365 DGMSMRGG 68.6275 24.6343 29.5402 GGVRRGMV 79.7386 34.5776 29.525 CYBCYKGS 67.9739 24.6343 28.7213 STGGRGSN 57.5163 17.1818 28.447 MRGRRGMR 75.1634 31.4178 27.8608 GCHKCYCY 50.3268 13.1844 27.4877 CRSGCNGG 41.8301 8.99446 26.5444 GRGMDGSK 66.0131 24.6343 26.3412 GGCKSYKG 39.8693 8.99446 24.0026 CDSMSCCD 75.1634 34.5776 23.8413 GCSCDGVS 56.2092 19.1112 23.5379 KGGMVMGM 63.3987 24.6343 23.3423 CDCCCWBK 55.5556 19.1112 22.8068 SCHGCCRS 45.098 13.1844 21.2382 GCGCSYGC 20.915 2.32849 20.4781 WGRAGSHS 60.1307 24.6343 19.8646 WSNCCCCN 67.3203 31.4178 19.0497 KCWCCYKS 49.0196 17.1818 18.799 GSCRCSCS 35.2941 8.99446 18.484 SRCCHGGS 42.4837 13.1844 18.3842 GGSWGHVS 69.9346 34.5776 18.2427 CCYNBCTK 58.1699 24.6343 17.9186 RSTKSSKG 66.0131 31.4178 17.7664 TKSKGNGS 64.7059 31.4178 16.533 KCCCYDSB 67.9739 34.5776 16.3676 SASCCCDV 49.0196 19.1112 16.1149 TKGSWGGN 45.7516 17.1818 15.5933 GSRCCGCS 23.5294 4.6029 15.3207 ASCCDSVR 66.6667 34.5776 15.1818 DGGGMGHK 47.7124 19.1112 14.9108 RGAGSCCN 32.0261 8.99446 14.9075 CYBYGCWS 54.902 24.6343 14.9044 CGCGGGCG 10.4575 0.587263 14.7463 GGSHKCTS 38.5621 13.1844 14.4474 DGRRGAAR 37.9085 13.1844 13.832 KKYCCWGM 43.7908 17.1818 13.8046 GSTSWGGV 37.2549 13.1844 13.2285 CWBCTBTB 55.5556 27.2532 12.7774 CCWBCTKB 45.098 19.1112 12.6367 YYCCAGBV 45.098 19.1112 12.6367 CNGSCGCK 29.4118 8.99446 12.2758 AKCYYTSS 41.8301 17.1818 12.1177 CYYGSDGV 62.7451 34.5776 11.9218 GCSCWCRS 28.7582 8.99446 11.6509 MGGCSMGS 28.7582 8.99446 11.6509 CYKTCCHS 35.2941 13.1844 11.4895 TSNGCBYC 50.3268 24.6343 11.1569 MMRGAGGV 34.6405 13.1844 10.934 CCAATSRG 14.3791 2.32849 10.8782 TGSARGGM 19.6078 4.6029 10.7406 GGVCNSAS 49.6732 24.6343 10.6661 CYYCWCRS 39.8693 17.1818 10.5335 GRCYHSCV 60.7843 34.5776 10.4537 RVAGMMAR 49.0196 24.6343 10.1863 KGVTTKGS 33.3333 13.1844 9.85969 WCCHKSRC 48.366 24.6343 9.71767 RCCVCCTS 22.8758 6.82448 9.69467 MSAGGCTB 22.8758 6.82448 9.69467 YCTGWGNS 38.5621 17.1818 9.53495 SGWGCGCS 18.3007 4.6029 9.34965 GGRGWYNS 55.5556 31.4178 9.22764 SAMAGRSN 55.5556 31.4178 9.22764 CCCTTBVB 34.6405 14.7055 9.16553 AGYCAVSC 22.2222 6.82448 9.08595 GRGCSCCD 22.2222 6.82448 9.08595 GBKGSYAG 32.0261 13.1844 8.8351 AGCCYRSY 25.4902 8.99446 8.73227 WGKCMCWG 25.4902 8.99446 8.73227 ACHGCSSC 21.5686 6.82448 8.4931 GAGARAGR 12.4183 2.32849 8.40411 GCGCGCWS 12.4183 2.32849 8.40411 AAAADVAA 18.3007 5.1632 8.25811 WSCRCSCG 24.8366 8.99446 8.19111 TKTGSVDG 39.2157 19.1112 8.17964 GRASTGGS 16.9935 4.6029 8.03212 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 8 Minimum motif score 35 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 5 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 0 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 0 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 0 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 0 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete