Task #3654 - 184a11a2 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 2 years ago 2 years ago 2 years ago 10 minutes (638sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) TRTTKAYH 56.16 22.9067 548.678 TAAMCANN 46.1 24.5868 228.502 TTRNGHAA 37.22 17.8556 219.488 GTWTAYNN 44.92 24.1785 214.267 TGNMCTYK 46.12 26.2679 189.038 GNMCTYKG 41.78 23.5477 168.068 RASKWCAD 48.22 29.479 160.215 ATYGATYN 14.96 4.80516 152.871 ATTDCNYA 26.26 13.5033 116.005 AGKTCANN 40.16 24.8555 114.72 GGDCRDNG 42.84 27.4992 109.537 TGTAGTYY 10.38 3.15949 109.491 AAAAMAAA 13.46 5.01146 105.919 GGGGHGGG 7.16 1.74981 97.0209 TDCHYAAY 32.04 19.4192 89.1929 TACAWYTC 7.82 2.26443 85.4435 RMCTTTGN 27.4 15.9747 82.7927 CBCCWCCS 12.22 4.8857 82.4643 ACTACRWY 8.06 2.48831 80.3663 GGRGGHGG 10.1 3.78629 74.8164 AAACAARH 23.52 13.3931 73.2485 TTGWTTTB 20.1 10.8073 72.0939 GGGARWTG 9.76 3.73148 69.1736 RWBCRAHG 32.46 21.1283 67.3458 ACYWTGNM 29.22 18.4354 66.4242 TTWAYYTW 19.82 10.876 66.3062 TTKCRWCA 12.96 6.04405 62.279 ARWTGTAG 7.5 2.57543 61.983 TGAMMTHM 25.84 16.4099 54.1263 ACAWYTCC 9.26 3.9582 51.0888 SGYGGGGS 6.84 2.48912 49.8609 TAWMTAWB 14.76 7.94064 48.3288 TCRATANH 15.2 8.3808 46.1661 ARCRAAYA 15.86 8.92137 45.454 GTAGTYCB 6.38 2.35652 44.4791 RAGKSCAN 35.3 25.4478 43.8091 CGMDKSCG 4.94 1.55973 43.5598 CKTGGMHB 26.36 17.7262 41.9363 AGKRCAVM 31.4 22.2396 40.5631 GTGWMCTH 14.6 8.26195 39.8104 CCKTBGVN 36.1 26.5515 39.6592 TRHGYAAS 18.72 11.7358 36.378 TDWCBYAK 38.18 28.8034 36.1405 TTGCNTCA 7.54 3.3931 34.6648 ATTKCRWC 7.2 3.21318 33.3898 TTWKCTHW 27.7 19.6402 32.948 RYBCTRRG 35.94 27.1078 32.4842 GWNCBYAG 28.96 20.8266 32.158 RTACAHAS 12.24 6.90793 31.6654 ATTWACYH 11.1 6.11061 30.4843 CGCNCCSS 4.78 1.78014 30.3649 TNCTRRGW 30.92 22.7711 30.166 RTGMAATH 12.84 7.46184 30.0299 CGGNGCGB 3.24 0.949847 29.1209 AHGCAHRC 12.96 7.68535 27.8693 KCWMKGYS 37.32 28.8966 27.7088 TKCRTCAY 7.06 3.3523 27.2202 WRCSAMGH 19.1 12.7486 26.9146 AAAWAAAT 6.98 3.31886 26.687 DDCTYAGH 35.02 26.8903 26.5644 TTTDGHAA 18.52 12.4073 25.1062 VGCGKCGB 3.84 1.37896 24.5678 CWCYGWRB 34.22 26.3791 24.5329 ACAANTCC 7.52 3.78711 24.5244 RYCWMYGM 29.46 22.1213 23.6777 TGBKTAYG 7.96 4.14651 23.5598 YSWCCCYD 35.86 28.0557 23.1932 TNGCTHWG 20.36 14.1929 22.5378 CDGYGDCS 18.24 12.3848 22.5352 GRGDYRGR 31.98 24.6047 22.009 CTVMCYCN 34.72 27.1405 21.9699 TYCKRWYY 36.14 28.5066 21.6175 WACVAAHY 26.6 19.7739 21.5488 CTTCCKGB 9.96 5.75465 21.3641 RTTCMWGG 12.04 7.38327 21.2933 ARTTCYHR 22.06 15.7883 21.2359 RATYGATH 6.34 3.13511 20.4679 TTWACYVD 24.62 18.1422 20.2674 TMACCKTK 6.74 3.42843 20.2168 TSSMTKCB 29.84 22.8774 19.998 GCSAMGNV 20.72 14.7442 19.9627 GCGCABGC 2.04 0.518623 19.7523 CSTCYRCS 8.28 4.59986 19.2877 TTSGYWDB 36.6 29.2688 18.9833 CMGGAAGB 9.54 5.57991 18.894 BTCRGTGN 16.88 11.6024 18.2785 WTRTWTGY 19.36 13.8255 17.2707 GTWGWYTY 15.5 10.5412 17.0842 TKTTTTTC 7.78 4.34948 17.0327 CAYCMCCV 8.9 5.20857 16.9003 CGYKMGSS 6.06 3.12628 16.2845 WWCSSAGV 22.84 17.0304 15.8944 GWGGGNGG 8.8 5.20186 15.762 ACBTWGNT 16.06 11.1535 15.541 CGMYGSGR 4.32 1.96558 15.2599 TGCAATNN 15.64 10.8274 15.204 THGWTCTH 12.66 8.34519 15.0528 HMTTAACB 7.76 4.4581 14.8692 AAHBATTA 8.94 5.38306 14.6325 GCGHDCGR 2.56 0.895427 14.4126 AWVTHCYA 26.24 20.272 14.3567 ATNATTAA 3.98 1.77528 14.3245 ARCCBTKG 13.34 8.9839 14.1566 GSCSCCGS 4.0 1.82739 13.2723 RCDCAMYS 26.68 20.89 12.6509 TCYWNCSW 34.2 27.9203 12.3456 WBCSTRGM 27.56 21.7402 12.3253 TGTYTTCH 13.76 9.50137 12.3032 TGBMCTHM 28.82 22.9103 12.2612 ACAYMCAC 6.94 3.99529 12.1558 TDCCWAMG 8.58 5.26973 12.1088 CASNATGB 20.34 15.2436 12.041 CYRTCYCB 15.4 10.9273 12.0075 AGRCNKDG 35.04 28.7709 11.9549 ARWCCAAA 7.34 4.32953 11.6969 TCRACADN 18.88 13.9946 11.6611 ACRGWGHD 29.96 24.06 11.5915 AHTCSCAG 7.04 4.10756 11.5602 WCCCMNCC 13.52 9.3804 11.4201 AWDAATBA 16.44 11.8905 11.3708 ACTACAAR 3.58 1.62391 11.2607 AAAMMAAG 11.1 7.37421 11.2172 WWTRKTTG 20.58 15.5562 11.1996 ATTDCWAA 8.7 5.43776 11.0729 HCACCAYS 8.3 5.12247 11.0432 TRHCCTGN 26.24 20.7856 10.4167 ANCKAWTK 13.02 9.08937 10.0185 CDGCSTKS 18.34 13.7151 9.93574 GCSGBYCG 2.52 0.994226 9.84342 YSAHTTCS 13.32 9.36269 9.83006 ANRAAAAC 14.48 10.3856 9.54335 AGATAMGV 3.5 1.63771 9.508 WNATTAAC 5.82 3.30488 9.48348 GWTCKTKS 10.02 6.6296 9.48213 GCVBMGGG 10.84 7.33238 9.19621 GTTGACAN 6.12 3.55016 9.1795 TWGACWTW 7.46 4.59246 9.13512 WRVTRACS 20.84 16.0769 8.88009 GCGHKGCG 1.56 0.470183 8.87486 WSSRTTKC 18.5 13.9846 8.86343 AACARRAA 13.08 9.29051 8.49592 AMTGAAWR 10.18 6.85332 8.40794 CTTAWCBN 9.48 6.28915 8.24611 VTMACCWB 23.0 18.165 7.91884 GRTKAAMG 5.04 2.8176 7.7815 CCAGVRTS 14.62 10.7072 7.67745 GCGCBYGC 2.84 1.27897 7.37961 AAHGTYCT 8.62 5.65788 7.36324 CTCVCBGS 11.78 8.29677 7.34656 AGKVYAKG 19.86 15.3969 7.32985 CHCKKSGD 31.3 25.9805 7.21814 AGRSGGCG 2.32 0.953195 7.1338 KCCCKMCS 7.94 5.12403 7.13104 YACNCACB 14.32 10.5101 7.10307 GGHWGGRG 12.84 9.23035 7.08623 GACMTTYM 8.78 5.81321 7.06948 CSVCGAVG 3.48 1.7308 6.95297 TGWTSTYK 21.96 17.3569 6.92039 GAWGCVAS 9.56 6.47303 6.88701 WCCMCCAC 3.96 2.08298 6.69794 TTGATTVD 8.32 5.47068 6.66123 CVCTTCCB 8.7 5.78326 6.64653 GRVCTAYG 4.72 2.65574 6.42036 CGGYHCSG 2.18 0.888985 6.39694 WBCKTATC 4.48 2.48232 6.3273 KGCGKSCG 2.0 0.781779 6.28307 RTRRCTCR 8.96 6.0568 5.97003 CCCDCCSK 6.9 4.3807 5.92276 GWCGVDCG 1.88 0.723529 5.78611 RGTRACBM 12.16 8.78735 5.75168 TRSTTYVK 32.02 26.9303 5.63604 CAGKDCAV 25.16 20.5057 5.55737 ACTSBGTW 10.86 7.6951 5.54608 TCRKWGYY 19.52 15.3385 5.51123 GCSTSGSY 9.3 6.39097 5.41177 TTWAYYWC 13.34 9.87623 5.173 TARAAWWA 9.44 6.53666 5.11211 GSCTBCKG 13.42 9.96116 5.04496 RRGCSYCG 4.8 2.79845 5.03317 AARTATWK 8.7 5.93741 4.90121 GCTYAGSN 11.4 8.23078 4.84738 ATCGATRN 1.84 0.729321 4.74944 AGCGMNCG 1.5 0.52807 4.74675 THGMAATS 9.4 6.54625 4.66395 CCMMGTGD 11.16 8.0504 4.60696 CCARCCYB 13.86 10.4014 4.59277 AGAAMRAA 8.72 5.98467 4.57105 AMGGTCKH 4.8 2.85384 4.15701 TKTAAYYH 18.44 14.5724 4.02777 CTCGSBCS 3.5 1.90138 3.72404 CVCSCTCS 5.4 3.35321 3.6943 AYTYGTAG 3.02 1.56441 3.53045 WAMYGAAW 10.04 7.20666 3.51919 ATCAATYH 4.82 2.91746 3.42879 TVTKYGTM 18.04 14.3211 3.27165 TGTGBGTG 6.44 4.22261 3.22821 TGWACCHW 9.78 7.01707 3.21182 RKCTNAGG 12.58 9.452 3.16431 AAGVVAAA 16.22 12.7056 3.06226 ASGAAWTS 6.62 4.38337 3.06066 TWTACRNA 10.5 7.65523 3.03522 GCAHDCAS 17.16 13.5594 3.0272 TAWMTASN 12.2 9.14506 2.94874 GGGAYWYG 5.74 3.68329 2.90134 GGVAKCSG 4.58 2.76818 2.87772 GGSCTSSG 5.8 3.75172 2.64637 ATKTHGMA 10.3 7.54303 2.50154 AKATGGCG 1.22 0.424122 2.4807 TGCCYCRB 9.8 7.11444 2.4773 DCGRMCGV 3.24 1.78053 2.42019 TCSRSGKC 6.36 4.2404 2.24698 WCCTCVCC 5.36 3.43283 2.20456 ACDCAKHC 13.56 10.4473 2.17565 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete