Motif finder

Task #102 - 5d7da07c

Status Start End Updated Duration Sequences Logs Task Bundle
finished 1 year, 2 months ago 1 year, 2 months ago 1 year, 2 months ago 14 minutes (861sec) Positive, Negative Float, Integer, Open

Results

Motif Occurrence(%) Expected(%) Chi2
GGGCGGGG 30.0654 0.587263 2263.9
GGGGCGGG 28.7582 0.587263 2067.57
GGCGGGGC 22.2222 0.587263 1219.47
RGGGGCGG 29.4118 1.17109 1041.97
GGGDGGGG 34.6405 1.75149 944.901
GGGMGGAG 26.7974 1.17109 857.975
GGMGGRGG 34.6405 2.32849 686.034
GMGGGGMG 33.9869 2.32849 658.561
TCCCCKCC 22.8758 1.17109 615.477
GGGSWGGG 32.0261 2.32849 579.51
AGGSVGGG 39.2157 3.47238 562.93
GMGGGVGG 39.2157 3.47238 562.93
GGVGGGHG 45.7516 5.1632 488.177
GMGGMGGG 29.4118 2.32849 481.969
GGGCGGGH 24.8366 1.75149 465.531
GCGGSGSC 28.1046 2.32849 436.567
CCCBCCCR 34.6405 3.47238 428.042
GGMGGVGC 33.9869 3.47238 410.278
CKGGGMRG 38.5621 4.6029 383.331
CGCCCSCK 26.1438 2.32849 372.674
GGWGGBGG 32.0261 3.47238 359.245
GSGCGCGG 17.6471 1.17109 354.654
GGGGSWGG 24.8366 2.32849 332.886
TCCKCCCH 30.719 3.47238 327.106
AGGAGGVR 29.4118 3.47238 296.472
GDGGVGGC 35.9477 5.1632 280.826
GCGCGGSS 22.2222 2.32849 260.045
GCKCCHGS 39.8693 6.82448 244.809
GCGGAGCB 18.3007 1.75149 239.241
WGRGSAGG 31.3725 4.6029 238.202
GGCKGCGG 14.3791 1.17109 227.917
CGCCKCCS 20.915 2.32849 226.994
ACCCCVCC 17.6471 1.75149 220.717
GGCHGGGV 32.0261 5.1632 213.835
SGCGCGGS 20.2614 2.32849 211.31
GRRGSCWG 43.7908 8.99446 205.961
GMWGGRRG 42.4837 8.99446 190.777
TCCYCCTC 13.0719 1.17109 185.036
GGGSSYGC 28.1046 4.6029 183.594
GSSTGGMG 28.1046 4.6029 183.594
CWGSGGSS 41.8301 8.99446 183.403
GGAGMVGS 35.2941 6.82448 181.713
GGRGARAG 18.9542 2.32849 181.627
GGSMGAGG 18.9542 2.32849 181.627
CCWSCCDS 52.2876 13.1844 177.443
MGMGGSGS 41.1765 8.99446 176.174
GGGWGGSM 27.451 4.6029 173.524
RGAAGGRG 18.3007 2.32849 167.627
CRCCCRGV 33.3333 6.82448 157.545
TGGHGGGS 22.2222 3.47238 154.903
GGCGGSYC 17.6471 2.32849 154.189
GVSMAGGR 49.0196 13.1844 149.023
CKGGWGSS 38.5621 8.99446 148.713
AGGSVVAG 41.1765 10.0605 147.245
RAGRGGCS 25.4902 4.6029 145.019
CGSGCGCB 21.5686 3.47238 144.292
GCWGVGSC 32.0261 6.82448 142.39
CTSCYKGS 37.9085 8.99446 142.211
TCCMCMCC 16.9935 2.32849 141.312
MGGCKGGS 24.8366 4.6029 136.085
GSVGGGAM 31.3725 6.82448 135.1
RGGCKSCK 36.6013 8.99446 129.643
CCMGSRGS 36.6013 8.99446 129.643
AGCCCSGC 11.1111 1.17109 129.086
GCGSAGGC 11.1111 1.17109 129.086
GSGCCGGG 11.1111 1.17109 129.086
CCCGCCTK 11.1111 1.17109 129.086
RGTGGGMG 16.3399 2.32849 128.997
SCCCTBKS 46.4052 13.1844 128.072
TGGRGCNS 35.9477 8.99446 123.577
GGGVVAGM 38.5621 10.0605 123.541
CAGRGNAG 23.5294 4.6029 119.07
CNGGGCTS 23.5294 4.6029 119.07
WGGGSGYK 35.2941 8.99446 117.657
CCASCCCD 19.6078 3.47238 114.717
GCRCSCKC 22.8758 4.6029 110.988
GNGGCGCK 22.8758 4.6029 110.988
CSAGSGCS 22.8758 4.6029 110.988
AGMSMGGR 33.9869 8.99446 106.251
GMGMGGAG 15.0327 2.32849 106.05
RGRCCAGG 15.0327 2.32849 106.05
AGAGGSHG 18.9542 3.47238 105.612
GTGSGSGK 22.2222 4.6029 103.19
GGGASYSG 22.2222 4.6029 103.19
GVHGAGGR 35.9477 10.0605 101.917
CBCYGGGB 35.9477 10.0605 101.917
WWGGGVGG 28.1046 6.82448 101.524
CAGSGCSV 28.1046 6.82448 101.524
TGSCCNSC 33.3333 8.99446 100.767
YTCCWGCN 33.3333 8.99446 100.767
TCCCBSCD 35.2941 10.0605 96.8352
TTCTCYYY 21.5686 4.6029 95.6764
CMGCCWGK 21.5686 4.6029 95.6764
GCYSYCCK 32.6797 8.99446 95.4275
CTCYSCMR 32.6797 8.99446 95.4275
CCAATSRG 14.3791 2.32849 95.4187
SCTCCRCV 27.451 6.82448 95.3834
SSCAGGCV 27.451 6.82448 95.3834
GRGVAGCN 41.8301 13.1844 95.2252
GCCYCTTB 17.6471 3.47238 88.5301
DGGSAAGG 17.6471 3.47238 88.5301
GSCKSCTG 20.915 4.6029 88.4466
TCTCYTYC 13.7255 2.32849 85.3489
GGMGCCYC 13.7255 2.32849 85.3489
GGDRGAAR 26.1438 6.82448 83.6768
WGGGTGGG 9.15033 1.17109 83.1814
GAGAGAGR 9.15033 1.17109 83.1814
GTGGGGYG 9.15033 1.17109 83.1814
CYYTBCTS 39.8693 13.1844 82.6351
GCGCTSSS 20.2614 4.6029 81.5009
GSRGCCCK 20.2614 4.6029 81.5009
RGGHGGTG 16.9935 3.47238 80.5541
RWGSWGGG 30.719 8.99446 80.2816
GCCTKSCH 25.4902 6.82448 78.1108
DSGCCCCK 25.4902 6.82448 78.1108
TSCGCGCS 13.0719 2.32849 75.8404
CKGAGRGG 13.0719 2.32849 75.8404
GGMCAGMS 19.6078 4.6029 74.8391
TYTCYCYD 38.5621 13.1844 74.7375
ATTGGCTG 5.88235 0.587263 73.0476
RGCTCHGG 16.3399 3.47238 72.9545
GYGSSCAG 18.9542 4.6029 68.4613
MGGCGCKS 18.9542 4.6029 68.4613
SCTCWGGS 18.9542 4.6029 68.4613
WGVAGARG 24.183 6.82448 67.5534
CCWKCTTB 24.183 6.82448 67.5534
CYTGGRGV 24.183 6.82448 67.5534
TGMGGGKG 12.4183 2.32849 66.8933
TCCASCYN 28.7582 8.99446 66.4436
WGCYMSAG 28.7582 8.99446 66.4436
KMGGGSTS 28.7582 8.99446 66.4436
GGGTGHGG 10.4575 1.75149 66.2101
ABSCCCTC 15.6863 3.47238 65.7314
ABCCYTSC 23.5294 6.82448 62.5621
GGWGCKVG 23.5294 6.82448 62.5621
CRGAGCYV 23.5294 6.82448 62.5621
RCCAATSR 18.3007 4.6029 62.3675
CGSGCMRG 18.3007 4.6029 62.3675
WRGGWGSC 28.1046 8.99446 62.1217
GGAGGMHC 15.0327 3.47238 58.8848
AAAAWRAA 11.7647 2.32849 58.5076
GGGGYGWG 11.7647 2.32849 58.5076
CCGCSGGS 11.7647 2.32849 58.5076
AGCCAATS 7.84314 1.17109 58.1596
WGCAGGGC 7.84314 1.17109 58.1596
TKKCTGKS 27.451 8.99446 57.945
RBYTGGGG 22.8758 6.82448 57.7622
TCYBCYKS 54.902 24.6343 56.8993
WCWSCBCC 35.2941 13.1844 56.7284
GBGTGSSY 35.2941 13.1844 56.7284
TBCTCCAC 9.80392 1.75149 56.642
RRKCCTGG 17.6471 4.6029 56.5577
AGCCTSBB 28.7582 10.0605 53.1679
GSAVAGCH 28.7582 10.0605 53.1679
GCTTKGCH 14.3791 3.47238 52.4146
TGGHGGCB 18.3007 5.1632 51.144
GAVBCCCC 18.3007 5.1632 51.144
TKGGCTYY 16.9935 4.6029 51.0319
WGRAAGGR 16.9935 4.6029 51.0319
WGCSCAGR 16.9935 4.6029 51.0319
WYYCCAGC 16.9935 4.6029 51.0319
GGCGWGMS 16.9935 4.6029 51.0319
GGSAGCWS 16.9935 4.6029 51.0319
GRASTGGS 16.9935 4.6029 51.0319
AGMRGCCA 11.1111 2.32849 50.6833
TTTGGGRR 11.1111 2.32849 50.6833
GBBCHGAG 36.6013 14.7055 49.8811
WCAGRGDG 21.5686 6.82448 48.7372
GGGTSMHG 21.5686 6.82448 48.7372
ACCGCCSC 7.18954 1.17109 47.3231
TCCCASTC 7.18954 1.17109 47.3231
GGACCYGC 7.18954 1.17109 47.3231
GGGGGTWG 7.18954 1.17109 47.3231
GGCGGTGS 7.18954 1.17109 47.3231
GCAGCARC 7.18954 1.17109 47.3231
CCGGMGGG 7.18954 1.17109 47.3231
AGGTGGVR 13.7255 3.47238 46.3208
GGBTWGGG 13.7255 3.47238 46.3208
RSTKSCTG 25.4902 8.99446 46.2871
TKMCCCCK 16.3399 4.6029 45.7901
GSWAGGGM 16.3399 4.6029 45.7901
WCCHTCTK 20.915 6.82448 44.5121
AGARAGAS 10.4575 2.32849 43.4204
AGGMKGCC 10.4575 2.32849 43.4204
AGSMAGCA 10.4575 2.32849 43.4204
TSCCCTCW 10.4575 2.32849 43.4204
GAGRGAWG 10.4575 2.32849 43.4204
GCGGGMCK 10.4575 2.32849 43.4204
CTCCCAKK 10.4575 2.32849 43.4204
CWAGGGMG 10.4575 2.32849 43.4204
CWCGCNGS 24.8366 8.99446 42.6918
CTSCDMRG 32.0261 13.1844 41.1981
YCTGWGDS 32.0261 13.1844 41.1981
AGRGWAGM 15.6863 4.6029 40.8323
TYCCWGGS 15.6863 4.6029 40.8323
GRGGMCSG 15.6863 4.6029 40.8323
GMRGCCRC 15.6863 4.6029 40.8323
GBCGCCRG 13.0719 3.47238 40.6035
DGCTGAGS 13.0719 3.47238 40.6035
AAGVAGAG 8.49673 1.75149 39.7447
CCCGCCAB 8.49673 1.75149 39.7447
RCCCAGVH 26.1438 10.0605 39.3391
GSTGMARR 24.183 8.99446 39.2418
TGAGAGGS 6.53595 1.17109 37.6028
GTGMGCGC 6.53595 1.17109 37.6028
GWCCTGGG 6.53595 1.17109 37.6028
GGCCGSCG 6.53595 1.17109 37.6028
GCACACAY 6.53595 1.17109 37.6028
CCACCAGS 6.53595 1.17109 37.6028
GDGCTBGC 16.3399 5.1632 37.0167
AGGSCASA 9.80392 2.32849 36.7189
AGCKGCWG 9.80392 2.32849 36.7189
ACASMCAG 9.80392 2.32849 36.7189
ACWCAGAM 9.80392 2.32849 36.7189
WCCCKCGC 9.80392 2.32849 36.7189
GWGACYCC 9.80392 2.32849 36.7189
GGGCKCTY 9.80392 2.32849 36.7189
RTSAGGGG 9.80392 2.32849 36.7189
KGTGKGTG 9.80392 2.32849 36.7189
CTCCAGKR 9.80392 2.32849 36.7189
CCGSGGCK 9.80392 2.32849 36.7189
AGAGCYVS 19.6078 6.82448 36.6363
CKGGAMDG 19.6078 6.82448 36.6363
TSCAGCRS 15.0327 4.6029 36.1585
GGGWRGAM 15.0327 4.6029 36.1585
GSCWGGTS 15.0327 4.6029 36.1585
CCCWSTSG 15.0327 4.6029 36.1585
RGRWCYCM 37.2549 17.1818 35.8798
GCDGAGAS 12.4183 3.47238 35.2626
GSGGTGCD 12.4183 3.47238 35.2626
AHCTSCBC 24.8366 10.0605 33.2043
CCAGDSAB 24.8366 10.0605 33.2043
GGAHGMKG 18.9542 6.82448 32.9858
GSDGWTGG 18.9542 6.82448 32.9858
DAGMCARG 18.9542 6.82448 32.9858
CRGWGHGG 18.9542 6.82448 32.9858
AGBCCABC 15.6863 5.1632 32.8139
GGBGTGGC 7.84314 1.75149 32.4156
GGSAMRAG 14.3791 4.6029 31.7686
GSTCYCTS 14.3791 4.6029 31.7686
RRAAGCAR 14.3791 4.6029 31.7686
CGCNMGGG 14.3791 4.6029 31.7686
CCWGSAAS 14.3791 4.6029 31.7686
AGTCASSC 9.15033 2.32849 30.5787
TKCCCCTY 9.15033 2.32849 30.5787
TCAGRGCY 9.15033 2.32849 30.5787
GGCTGYMG 9.15033 2.32849 30.5787
GGYGGCMG 9.15033 2.32849 30.5787
GRCCAATS 9.15033 2.32849 30.5787
GCWAGARG 9.15033 2.32849 30.5787

Parameters

Search parameters Motif filtering Positive sequences Open Contrast sequences Open Statistic parameters Add first run - exclude sequence if motif found
parameters in ini format

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