Task

Task #102 - 5d7da07c

Description:

Status	Start	End	Updated	Duration	Sequences	Logs	Task Bundle
finished	1 year, 2 months ago	1 year, 2 months ago	1 year, 2 months ago	14 minutes (861sec)	Positive, Negative	Float, Integer,	Open

Results

Motif	Occurrence(%)	Expected(%)	Chi2
GGGCGGGG	30.0654	0.587263	2263.9
GGGGCGGG	28.7582	0.587263	2067.57
GGCGGGGC	22.2222	0.587263	1219.47
RGGGGCGG	29.4118	1.17109	1041.97
GGGDGGGG	34.6405	1.75149	944.901
GGGMGGAG	26.7974	1.17109	857.975
GGMGGRGG	34.6405	2.32849	686.034
GMGGGGMG	33.9869	2.32849	658.561
TCCCCKCC	22.8758	1.17109	615.477
GGGSWGGG	32.0261	2.32849	579.51
AGGSVGGG	39.2157	3.47238	562.93
GMGGGVGG	39.2157	3.47238	562.93
GGVGGGHG	45.7516	5.1632	488.177
GMGGMGGG	29.4118	2.32849	481.969
GGGCGGGH	24.8366	1.75149	465.531
GCGGSGSC	28.1046	2.32849	436.567
CCCBCCCR	34.6405	3.47238	428.042
GGMGGVGC	33.9869	3.47238	410.278
CKGGGMRG	38.5621	4.6029	383.331
CGCCCSCK	26.1438	2.32849	372.674
GGWGGBGG	32.0261	3.47238	359.245
GSGCGCGG	17.6471	1.17109	354.654
GGGGSWGG	24.8366	2.32849	332.886
TCCKCCCH	30.719	3.47238	327.106
AGGAGGVR	29.4118	3.47238	296.472
GDGGVGGC	35.9477	5.1632	280.826
GCGCGGSS	22.2222	2.32849	260.045
GCKCCHGS	39.8693	6.82448	244.809
GCGGAGCB	18.3007	1.75149	239.241
WGRGSAGG	31.3725	4.6029	238.202
GGCKGCGG	14.3791	1.17109	227.917
CGCCKCCS	20.915	2.32849	226.994
ACCCCVCC	17.6471	1.75149	220.717
GGCHGGGV	32.0261	5.1632	213.835
SGCGCGGS	20.2614	2.32849	211.31
GRRGSCWG	43.7908	8.99446	205.961
GMWGGRRG	42.4837	8.99446	190.777
TCCYCCTC	13.0719	1.17109	185.036
GGGSSYGC	28.1046	4.6029	183.594
GSSTGGMG	28.1046	4.6029	183.594
CWGSGGSS	41.8301	8.99446	183.403
GGAGMVGS	35.2941	6.82448	181.713
GGRGARAG	18.9542	2.32849	181.627
GGSMGAGG	18.9542	2.32849	181.627
CCWSCCDS	52.2876	13.1844	177.443
MGMGGSGS	41.1765	8.99446	176.174
GGGWGGSM	27.451	4.6029	173.524
RGAAGGRG	18.3007	2.32849	167.627
CRCCCRGV	33.3333	6.82448	157.545
TGGHGGGS	22.2222	3.47238	154.903
GGCGGSYC	17.6471	2.32849	154.189
GVSMAGGR	49.0196	13.1844	149.023
CKGGWGSS	38.5621	8.99446	148.713
AGGSVVAG	41.1765	10.0605	147.245
RAGRGGCS	25.4902	4.6029	145.019
CGSGCGCB	21.5686	3.47238	144.292
GCWGVGSC	32.0261	6.82448	142.39
CTSCYKGS	37.9085	8.99446	142.211
TCCMCMCC	16.9935	2.32849	141.312
MGGCKGGS	24.8366	4.6029	136.085
GSVGGGAM	31.3725	6.82448	135.1
RGGCKSCK	36.6013	8.99446	129.643
CCMGSRGS	36.6013	8.99446	129.643
AGCCCSGC	11.1111	1.17109	129.086
GCGSAGGC	11.1111	1.17109	129.086
GSGCCGGG	11.1111	1.17109	129.086
CCCGCCTK	11.1111	1.17109	129.086
RGTGGGMG	16.3399	2.32849	128.997
SCCCTBKS	46.4052	13.1844	128.072
TGGRGCNS	35.9477	8.99446	123.577
GGGVVAGM	38.5621	10.0605	123.541
CAGRGNAG	23.5294	4.6029	119.07
CNGGGCTS	23.5294	4.6029	119.07
WGGGSGYK	35.2941	8.99446	117.657
CCASCCCD	19.6078	3.47238	114.717
GCRCSCKC	22.8758	4.6029	110.988
GNGGCGCK	22.8758	4.6029	110.988
CSAGSGCS	22.8758	4.6029	110.988
AGMSMGGR	33.9869	8.99446	106.251
GMGMGGAG	15.0327	2.32849	106.05
RGRCCAGG	15.0327	2.32849	106.05
AGAGGSHG	18.9542	3.47238	105.612
GTGSGSGK	22.2222	4.6029	103.19
GGGASYSG	22.2222	4.6029	103.19
GVHGAGGR	35.9477	10.0605	101.917
CBCYGGGB	35.9477	10.0605	101.917
WWGGGVGG	28.1046	6.82448	101.524
CAGSGCSV	28.1046	6.82448	101.524
TGSCCNSC	33.3333	8.99446	100.767
YTCCWGCN	33.3333	8.99446	100.767
TCCCBSCD	35.2941	10.0605	96.8352
TTCTCYYY	21.5686	4.6029	95.6764
CMGCCWGK	21.5686	4.6029	95.6764
GCYSYCCK	32.6797	8.99446	95.4275
CTCYSCMR	32.6797	8.99446	95.4275
CCAATSRG	14.3791	2.32849	95.4187
SCTCCRCV	27.451	6.82448	95.3834
SSCAGGCV	27.451	6.82448	95.3834
GRGVAGCN	41.8301	13.1844	95.2252
GCCYCTTB	17.6471	3.47238	88.5301
DGGSAAGG	17.6471	3.47238	88.5301
GSCKSCTG	20.915	4.6029	88.4466
TCTCYTYC	13.7255	2.32849	85.3489
GGMGCCYC	13.7255	2.32849	85.3489
GGDRGAAR	26.1438	6.82448	83.6768
WGGGTGGG	9.15033	1.17109	83.1814
GAGAGAGR	9.15033	1.17109	83.1814
GTGGGGYG	9.15033	1.17109	83.1814
CYYTBCTS	39.8693	13.1844	82.6351
GCGCTSSS	20.2614	4.6029	81.5009
GSRGCCCK	20.2614	4.6029	81.5009
RGGHGGTG	16.9935	3.47238	80.5541
RWGSWGGG	30.719	8.99446	80.2816
GCCTKSCH	25.4902	6.82448	78.1108
DSGCCCCK	25.4902	6.82448	78.1108
TSCGCGCS	13.0719	2.32849	75.8404
CKGAGRGG	13.0719	2.32849	75.8404
GGMCAGMS	19.6078	4.6029	74.8391
TYTCYCYD	38.5621	13.1844	74.7375
ATTGGCTG	5.88235	0.587263	73.0476
RGCTCHGG	16.3399	3.47238	72.9545
GYGSSCAG	18.9542	4.6029	68.4613
MGGCGCKS	18.9542	4.6029	68.4613
SCTCWGGS	18.9542	4.6029	68.4613
WGVAGARG	24.183	6.82448	67.5534
CCWKCTTB	24.183	6.82448	67.5534
CYTGGRGV	24.183	6.82448	67.5534
TGMGGGKG	12.4183	2.32849	66.8933
TCCASCYN	28.7582	8.99446	66.4436
WGCYMSAG	28.7582	8.99446	66.4436
KMGGGSTS	28.7582	8.99446	66.4436
GGGTGHGG	10.4575	1.75149	66.2101
ABSCCCTC	15.6863	3.47238	65.7314
ABCCYTSC	23.5294	6.82448	62.5621
GGWGCKVG	23.5294	6.82448	62.5621
CRGAGCYV	23.5294	6.82448	62.5621
RCCAATSR	18.3007	4.6029	62.3675
CGSGCMRG	18.3007	4.6029	62.3675
WRGGWGSC	28.1046	8.99446	62.1217
GGAGGMHC	15.0327	3.47238	58.8848
AAAAWRAA	11.7647	2.32849	58.5076
GGGGYGWG	11.7647	2.32849	58.5076
CCGCSGGS	11.7647	2.32849	58.5076
AGCCAATS	7.84314	1.17109	58.1596
WGCAGGGC	7.84314	1.17109	58.1596
TKKCTGKS	27.451	8.99446	57.945
RBYTGGGG	22.8758	6.82448	57.7622
TCYBCYKS	54.902	24.6343	56.8993
WCWSCBCC	35.2941	13.1844	56.7284
GBGTGSSY	35.2941	13.1844	56.7284
TBCTCCAC	9.80392	1.75149	56.642
RRKCCTGG	17.6471	4.6029	56.5577
AGCCTSBB	28.7582	10.0605	53.1679
GSAVAGCH	28.7582	10.0605	53.1679
GCTTKGCH	14.3791	3.47238	52.4146
TGGHGGCB	18.3007	5.1632	51.144
GAVBCCCC	18.3007	5.1632	51.144
TKGGCTYY	16.9935	4.6029	51.0319
WGRAAGGR	16.9935	4.6029	51.0319
WGCSCAGR	16.9935	4.6029	51.0319
WYYCCAGC	16.9935	4.6029	51.0319
GGCGWGMS	16.9935	4.6029	51.0319
GGSAGCWS	16.9935	4.6029	51.0319
GRASTGGS	16.9935	4.6029	51.0319
AGMRGCCA	11.1111	2.32849	50.6833
TTTGGGRR	11.1111	2.32849	50.6833
GBBCHGAG	36.6013	14.7055	49.8811
WCAGRGDG	21.5686	6.82448	48.7372
GGGTSMHG	21.5686	6.82448	48.7372
ACCGCCSC	7.18954	1.17109	47.3231
TCCCASTC	7.18954	1.17109	47.3231
GGACCYGC	7.18954	1.17109	47.3231
GGGGGTWG	7.18954	1.17109	47.3231
GGCGGTGS	7.18954	1.17109	47.3231
GCAGCARC	7.18954	1.17109	47.3231
CCGGMGGG	7.18954	1.17109	47.3231
AGGTGGVR	13.7255	3.47238	46.3208
GGBTWGGG	13.7255	3.47238	46.3208
RSTKSCTG	25.4902	8.99446	46.2871
TKMCCCCK	16.3399	4.6029	45.7901
GSWAGGGM	16.3399	4.6029	45.7901
WCCHTCTK	20.915	6.82448	44.5121
AGARAGAS	10.4575	2.32849	43.4204
AGGMKGCC	10.4575	2.32849	43.4204
AGSMAGCA	10.4575	2.32849	43.4204
TSCCCTCW	10.4575	2.32849	43.4204
GAGRGAWG	10.4575	2.32849	43.4204
GCGGGMCK	10.4575	2.32849	43.4204
CTCCCAKK	10.4575	2.32849	43.4204
CWAGGGMG	10.4575	2.32849	43.4204
CWCGCNGS	24.8366	8.99446	42.6918
CTSCDMRG	32.0261	13.1844	41.1981
YCTGWGDS	32.0261	13.1844	41.1981
AGRGWAGM	15.6863	4.6029	40.8323
TYCCWGGS	15.6863	4.6029	40.8323
GRGGMCSG	15.6863	4.6029	40.8323
GMRGCCRC	15.6863	4.6029	40.8323
GBCGCCRG	13.0719	3.47238	40.6035
DGCTGAGS	13.0719	3.47238	40.6035
AAGVAGAG	8.49673	1.75149	39.7447
CCCGCCAB	8.49673	1.75149	39.7447
RCCCAGVH	26.1438	10.0605	39.3391
GSTGMARR	24.183	8.99446	39.2418
TGAGAGGS	6.53595	1.17109	37.6028
GTGMGCGC	6.53595	1.17109	37.6028
GWCCTGGG	6.53595	1.17109	37.6028
GGCCGSCG	6.53595	1.17109	37.6028
GCACACAY	6.53595	1.17109	37.6028
CCACCAGS	6.53595	1.17109	37.6028
GDGCTBGC	16.3399	5.1632	37.0167
AGGSCASA	9.80392	2.32849	36.7189
AGCKGCWG	9.80392	2.32849	36.7189
ACASMCAG	9.80392	2.32849	36.7189
ACWCAGAM	9.80392	2.32849	36.7189
WCCCKCGC	9.80392	2.32849	36.7189
GWGACYCC	9.80392	2.32849	36.7189
GGGCKCTY	9.80392	2.32849	36.7189
RTSAGGGG	9.80392	2.32849	36.7189
KGTGKGTG	9.80392	2.32849	36.7189
CTCCAGKR	9.80392	2.32849	36.7189
CCGSGGCK	9.80392	2.32849	36.7189
AGAGCYVS	19.6078	6.82448	36.6363
CKGGAMDG	19.6078	6.82448	36.6363
TSCAGCRS	15.0327	4.6029	36.1585
GGGWRGAM	15.0327	4.6029	36.1585
GSCWGGTS	15.0327	4.6029	36.1585
CCCWSTSG	15.0327	4.6029	36.1585
RGRWCYCM	37.2549	17.1818	35.8798
GCDGAGAS	12.4183	3.47238	35.2626
GSGGTGCD	12.4183	3.47238	35.2626
AHCTSCBC	24.8366	10.0605	33.2043
CCAGDSAB	24.8366	10.0605	33.2043
GGAHGMKG	18.9542	6.82448	32.9858
GSDGWTGG	18.9542	6.82448	32.9858
DAGMCARG	18.9542	6.82448	32.9858
CRGWGHGG	18.9542	6.82448	32.9858
AGBCCABC	15.6863	5.1632	32.8139
GGBGTGGC	7.84314	1.75149	32.4156
GGSAMRAG	14.3791	4.6029	31.7686
GSTCYCTS	14.3791	4.6029	31.7686
RRAAGCAR	14.3791	4.6029	31.7686
CGCNMGGG	14.3791	4.6029	31.7686
CCWGSAAS	14.3791	4.6029	31.7686
AGTCASSC	9.15033	2.32849	30.5787
TKCCCCTY	9.15033	2.32849	30.5787
TCAGRGCY	9.15033	2.32849	30.5787
GGCTGYMG	9.15033	2.32849	30.5787
GGYGGCMG	9.15033	2.32849	30.5787
GRCCAATS	9.15033	2.32849	30.5787
GCWAGARG	9.15033	2.32849	30.5787

Parameters

Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences.
0 - disable run

parameters in ini format

1		Complementarity. 0 - forward strand. 1 - forward + reverse strand.
30		Minimum motif score
35		Maximum presence of motif for random reasons in the positive set of sequences [0-100]
5		Minimum presence of motif in the positive set of sequences [0-100]
pos.fst		File with positive set of sequences
0		0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1]
0		Score type: 0 - chi-squared or 1 - binomial [0, 1]
0		Maximum number of result motifs. 0 - reveal all significant motifs [0, ]
0		Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3]
0		Unsupported param
0		 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100]
neg.fst		File with the contrast set of sequences
10		Maximum score in the contrast set of sequences
0		Unsupported param
0		Output results with Bonferroni correction [0, 1]
a.txt		Results file
1		Write integer results. 0 - real values, 1 - integer [0, 1]
0		Skip motifs that coincide with the previous ones with a shift [0, 1]