Task #3360 - c0abf188 Description: Status Start End Updated Duration Sequences Logs Task Bundle finished 3 years ago 3 years ago 3 years ago 19 minutes (1150sec) Positive, Negative Float, Integer, Tomtom Open Results Motif positions Meme Tomtom output Motif Occurrence(%) Expected(%) -log10(Binomial prob) CSCCRCCS 9.34379 3.31107 85.9987 TYRTTDWY 9.12981 3.44543 74.5356 TCACSYSA 12.5178 5.6622 73.2678 GCGWGCGN 5.77746 1.8393 59.1661 CCRCCVCB 16.9401 9.46142 58.0336 AVGGMMAR 22.2004 13.6585 57.3844 GRGKYRGG 22.0399 13.6696 54.8977 CGCACGCR 3.19187 0.651527 54.4717 TYGHYNTY 24.8395 16.2977 50.0156 GGYGGSGH 12.5535 6.54038 49.8066 ACRTACAC 5.63481 1.98914 47.8291 RGDCAAVG 14.6041 8.19108 47.1684 TGTAYGTG 6.56205 2.61539 44.9206 GRCMAMGN 18.6698 11.5213 44.7119 GVVCKTKG 24.3224 16.3289 43.0591 HVRACAAV 17.8852 11.0128 42.5694 CGCYYNCG 7.18616 3.0798 42.4802 GGCBAGCK 8.38088 3.97074 39.6191 NAAYAAVN 18.4914 11.7228 38.9724 AGARCTGG 6.38374 2.67267 38.7626 CGTGCGYR 3.51284 1.01289 38.2755 ATACRNAC 7.11484 3.16528 38.1805 RASNTGGM 28.6555 20.647 35.9695 ACWCRTAC 5.99144 2.5211 35.3335 TGRMYTTK 12.4643 7.15567 34.9943 RGWGRMAR 35.6812 27.2242 33.6339 CGCYSCGV 6.4194 2.90002 32.0985 GSTSGCCS 9.98573 5.48924 30.6818 AGCTCTMC 5.59914 2.41096 30.5301 CGDMSCSG 5.90228 2.63098 29.8231 VTCACCYV 23.2168 16.4609 28.7859 TTVTTNSY 15.2104 9.82659 26.7333 GCGRCGVB 6.40157 3.12546 25.3354 RGGYAGRG 16.6726 11.1523 25.1155 AWRWYRAW 9.57561 5.46572 24.8734 WCCKHVCC 24.0014 17.5214 24.5143 GGGCNAGC 7.59629 4.03163 23.9956 ACATGCAC 6.54422 3.29101 23.6466 ATGTWYGT 3.12054 1.08633 23.0922 YTSGCTYD 15.8345 10.6443 22.4984 SVTCACCB 20.3103 14.6068 20.8853 GRYRABSG 19.0442 13.5779 20.073 RHTSGCTH 17.368 12.1889 19.4211 CGDYMDCG 6.27675 3.2902 19.0814 AAMBSDAA 7.81027 4.4462 18.6456 WGCGMKCG 3.31669 1.31007 18.5707 CTCCDCCS 9.78959 5.99042 18.4278 TRGCCCYR 10.3424 6.4364 18.3071 DRRCCAMG 15.781 10.9586 17.9196 ARRGYRGG 19.7575 14.4241 17.606 TYRGRMRA 13.3024 8.89828 17.6009 RSCKTKGS 22.3966 16.7764 17.4228 KCGCYVCG 4.76106 2.29704 17.1862 GAVAACWK 8.41655 4.99879 17.0164 TATGHATG 3.58417 1.52602 16.8399 CCKMSTCS 11.0021 7.0974 16.3349 GRCYCYGR 16.2447 11.4913 16.3123 RCSAATSR 6.52639 3.61348 16.0341 CCAHSTYK 15.9772 11.318 15.6666 ACGTSACB 3.92297 1.80021 15.1839 GTKCGYGC 4.35093 2.09553 15.0265 GATTSGHY 3.90514 1.79967 14.8504 GGGGHYVG 14.3367 9.99799 14.7135 AAWBADWA 5.88445 3.2051 14.6428 TGTKCGTG 4.65407 2.34058 14.1364 TCTDHMTY 18.4736 13.64 14.0531 TTKAHWWA 3.24536 1.39324 14.0335 ACACGCAC 3.61983 1.64732 13.7347 AGAHAAVH 9.34379 5.95641 13.3841 RCCACCRM 8.5592 5.33173 13.3362 TTRYYYDG 19.6327 14.7503 13.2136 ASKTKGDA 10.9486 7.28464 13.1184 ACGCABAC 4.81455 2.4986 13.0737 TCWCCWNC 22.6997 17.5372 12.8697 ARARYTDA 8.27389 5.14387 12.7276 CAGGMDAG 12.0899 8.27025 12.6597 RRWMRATR 14.6933 10.5043 12.4229 RRHCGYCG 4.19044 2.08946 12.2857 GANRGYGG 13.7839 9.73751 12.2747 ARKMRARC 16.6191 12.2028 12.1386 CGSKHCGD 5.63481 3.14432 12.0802 CGRDCGRB 5.3495 2.93722 11.9854 AWDTHYAA 5.88445 3.34744 11.7661 TATGTKYG 6.31241 3.67595 11.6952 TKTRTATG 6.61555 3.90854 11.6934 GGWCRGNK 22.7532 17.7508 11.4505 AHARTRGA 6.4729 3.83625 11.0297 CSAATCRV 3.90514 1.95331 10.6917 GTCACGTG 2.26462 0.878906 10.5228 ATATAVAY 2.06847 0.76814 10.2663 TTWWGWAA 1.85449 0.644615 10.2572 AVGGTCRK 7.18616 4.44204 10.2104 RCSGMCGR 3.61983 1.78439 9.93208 GCSSGHCG 3.83381 1.94032 9.77387 TACRVACA 8.1669 5.2792 9.41737 TYHAGTTY 4.36876 2.34542 9.27433 GGYGGRSG 8.14907 5.27505 9.27147 TVACBTRG 10.4137 7.16183 9.03196 RKTBGTMR 11.4658 8.06924 8.80787 CGWBTNCG 4.60057 2.53988 8.76214 CCRCCSAS 8.64836 5.72425 8.69088 GVRASAAN 21.2375 16.7158 8.64258 TACRTAYA 1.81883 0.661579 8.58031 GAKAKCTR 7.40014 4.72965 8.42613 RRVTCACS 16.2803 12.2906 8.42495 GGHWGSGG 13.2846 9.67781 8.3026 WRRCGRCG 3.47718 1.75118 8.25959 GCCCMSGB 12.6427 9.12723 8.25881 TGCGCDTG 3.81598 2.00442 7.96432 GRCWRGGC 12.3752 8.96078 7.59248 TGRMAAHG 7.16833 4.60083 7.5908 AAMTCRYT 2.49643 1.11313 7.46543 GAAAATCR 1.08773 0.289822 7.4338 AGDTSAAD 8.02425 5.3126 7.36213 KCGSKCGK 4.56491 2.58607 7.31403 GASYTGAM 6.61555 4.17974 7.26921 GCGGGGMY 3.70899 1.95969 7.23619 CTGCCCMK 10.6277 7.51557 7.03702 AGCSAGSC 7.1505 4.62926 6.98105 TNGKCAAV 9.57561 6.64477 6.82027 GAMTWTGG 2.51427 1.14688 6.79906 TCAARGYC 3.28103 1.67449 6.76297 AYAGAYAD 6.88302 4.43182 6.71932 RGRACAGR 11.8759 8.62837 6.58368 RAYGAMDK 12.393 9.0867 6.47759 GVCBTCGG 4.36876 2.48962 6.337 TRGGYRGS 17.3859 13.5326 6.22781 WVTCACCH 18.4736 14.5539 5.91392 CGMGCSCG 1.97932 0.832645 5.75695 AMAAWSAC 5.09986 3.08253 5.74001 WAAKYWAG 3.70899 2.03383 5.63793 ACTGAAAA 1.01641 0.283154 5.57482 ATDDYAAC 4.24394 2.4387 5.5218 TSRGKTCR 8.64836 5.97978 5.49337 WTADTTMR 2.38944 1.11275 5.36855 WSTTSTCC 7.07917 4.69893 5.24539 AANAGDAA 4.99287 3.03087 5.21722 ATKCRTAC 2.24679 1.02872 5.0438 TSGCTWVB 14.7825 11.3571 4.94905 TYRAYGAH 3.76248 2.10776 4.9427 GCTCSGCS 3.47718 1.89723 4.93639 DGCCACCD 13.0884 9.85939 4.92744 WHCTYKTC 9.9679 7.15036 4.91107 YACCACCR 4.9572 3.02384 4.87713 ACGCATGC 1.85449 0.784368 4.70804 RGGCTVSG 12.1612 9.07519 4.65711 TYMCKWHC 15.2104 11.7884 4.54237 WGCCMMGG 11.6619 8.65572 4.50095 GCGCKYGC 3.13837 1.67224 4.46775 GRRDAMGG 15.5136 12.1036 4.19361 ACBTGAWH 6.34807 4.18574 4.13326 AATWTGGC 1.21255 0.413977 4.09562 AYCGDAMG 1.96148 0.872706 4.07815 RGVAASAG 15.2461 11.8854 4.01995 GARGCCRD 11.9829 8.99267 3.98344 GMYTCGGB 5.20685 3.28001 3.94688 CCRGVTCS 9.14765 6.54482 3.90957 AWTVDTTR 4.52924 2.7503 3.89535 GCCSCRMG 5.43866 3.47078 3.85917 TNRGGTDG 14.194 10.9833 3.70183 CSTCGSYS 6.99001 4.74872 3.68253 TCYKGMYY 25.5528 21.4226 3.64329 TAGARHTR 4.49358 2.73968 3.61475 ATBRAMDA 5.93795 3.90226 3.45919 CGTRACGS 1.28388 0.46932 3.43688 WGAAAATC 1.1234 0.378112 3.42651 RYCAMCAG 10.4672 7.74382 3.29194 TCKDMCCY 12.607 9.62675 3.24835 AVGCSCCG 2.92439 1.57721 3.15873 AYGCGCAC 2.40728 1.21245 3.04554 TGWTRATG 3.58417 2.0754 3.00677 CKTKGDAV 13.4986 10.4594 2.91839 GRWYGAAS 4.49358 2.79219 2.78073 ARGCSRGG 8.2204 5.87461 2.64452 ATTKTTSA 1.24822 0.467407 2.63415 GAMARRCR 9.73609 7.18543 2.56914 AYATRTAC 2.54993 1.33469 2.54275 TWAYCBWA 2.67475 1.42933 2.43623 RAHCCCMG 7.25749 5.07868 2.4341 TYDWAGTW 3.2632 1.87021 2.31617 TTTAHTYN 3.29886 1.89885 2.28322 RHTCKKGG 11.7511 8.9937 2.19875 CAGRGTCR 5.11769 3.3345 2.13969 TYATSACC 2.99572 1.68054 2.11396 AAKBGRAW 6.63338 4.58616 2.08264 Parameters Search parameters Complementary Statistical test type(score) Use Bonferroni correction for binomial score Skip motifs shifted by 1 symbol Motif filtering Minimum motif score Maximum number of results Positive sequences Sequences set Open Maximum motif presence by chance(%) Minimum motif presence in sequences set(%) Contrast sequences Contrast sequences set set Open Maximum motif score in the contrast set of sequences Statistic parameters Using of real frequencies Markov state length Add first run - exclude sequence if motif found Minimum percentage of remaining sequences. 0 - disable run parameters in ini format 1 Complementarity. 0 - forward strand. 1 - forward + reverse strand. 2 Minimum motif score 30 Maximum presence of motif for random reasons in the positive set of sequences [0-100] 1 Minimum presence of motif in the positive set of sequences [0-100] pos.fst File with positive set of sequences 1 0 - neutral frequencies, 1 - real nucleotide frequencies in the set of sequences [0, 1] 1 Score type: 0 - chi-squared or 1 - binomial [0, 1] 0 Maximum number of result motifs. 0 - reveal all significant motifs [0, ] 3 Markov chain order (0-Bernulli, 1-dinucleotide, 2-trinucleotide), when using real nucleotide frequencies [0-3] 0 Unsupported param 0 Minimum % of remaining sequences. First run - exclude sequences if motif found. 0 - disable. [0, 100] neg.fst File with the contrast set of sequences 10 Maximum score in the contrast set of sequences 0 Unsupported param 1 Output results with Bonferroni correction [0, 1] a.txt Results file 1 Write integer results. 0 - real values, 1 - integer [0, 1] 1 Skip motifs that coincide with the previous ones with a shift [0, 1] Delete